Sed0010204 (gene) Chayote v1

Overview


Name	Sed0010204
Type	gene
Organism	Sechium edule (Chayote v1)
Description	U6 snRNA phosphodiesterase
Location	LG05: 4356140 .. 4365600 (-)
RNA-Seq Expression	Sed0010204
Synteny	Sed0010204

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATTGCATATATTTTTATTTCCGAGAACAGCACCAAGGTGAGAGATCTGATCGCGTGGGTGGGAATGGAAGCTCTGATAGCTACGTATGGAGGAAGCTCCTCAGTTGAAGAAGAAGAAGATGATGAAATTGTCTCATCAGCTTCAGCTTCACCACTGCCTCCGCCGCCTCTCTCGCTTCTTCATCCTCCAAATTCCATATGTATTCTTCTTCTTCGCTTTTACATTTACATTCACAATTTCTTCCTCCATAGCCGAATCTTTCATTGTTTTTCTTGTTTAGGTGCTTTCCATGATTTCCCAATCGCCCAGCCCAGTAGGGTTCGAAGCTTCCCTCACGTTCAAGGAAACTATGCCCTTCATGTCTATATCCCAGGTTTTCAATTCCGTTCTTCAATTTCATTTTCTGTTTTTTTTATTTATTATGAAACAACAATTAACAGTGAGATAAAATAAGATGATTTATATGTTTCACCAATATTCACTAAGCTAAGAGAACGGTTTTATTAATTTTAGAGATGCATTGGGGCTAGAGTTTTTAGAGAACCTAAATATAAAAGCATAAACCTAATTAGATATTTTGCCTAGCGTTCAGTGAGTCATATACCCACGACCGGACAGCGAGACTCCAGATTAAGTAATCATAGTCATATCCAAATTTGTAGACTTGGGCGGTATGTCTCGTGATATTAGTGTCGATGTGCTAGCAAACTGGGCTGGACAATAACGGATATAAAGAAATTTTAGTTACTAATTGGAAGTCTTTGCCACGTTTCTATTTCTAGGGAGTTATATTTATCATTGATTTCATTTGAAGGAGATTGCTAGAGACAGTCCTGTCTGGAATCAATGTCTTAATAATTAAATTATAAACTGTGGTGTTCTGTTCTTCTGTTGCTATACTTCGTTTGAAAAGTTCACTCTCGTGGACCTCTTGTTTTTGGCTACTTTTACAGTTTTTCTTCTTCAAATGTATGCTGGTTTCAATTTGGTTTATGCCCTCAATCTTTCCTTATTTAAGCTTTTAAATTTCATGAACTTAGCCTGCTATGTTGCCTCTTAAGCAAAGTCTTTTACTGTACAAAGAGTAGTATTACAGTTCTTGTTACTGGCCTGTGTTTCATTATAACTATAACTATGCTCGTTATTGCTGTCATGGAATCCTGGAATGTTAGATAGAATCATCTAGTTAGGAATTCCAAAATATCTTTTTTTTTTAAACAAGGGTAATCACGCCGTCCCTAATATCATGTTTTTTTAGAGGGCATGTTTAGTCTCTATGGTTGTCTTTGGTTTTCGTAGACCTTTGTCCGGCCGGGAGTCTGGATTTTTCTGCCTCTTTTGGACTCGTTTGGTATCCATCCTGGGAACTGGGATGTTAGGTGTTGGGTCCCCAGTCCTTTGAAGAATGTCTGTTCTATAGGTAGTACAAATGTGTATCTGAGTTCTGAAAAGGTCAAATTCATTGCATGGAACGTATAGATCGGATTTAAAGACATTCTTCCTTAATTTGGGATTGCATGTTCAAGGCTTTTGGAGTGAGCTTGGCTCGTAATAATGAGATTTGTTGCATGATAGAGGACGTGTTGCTCCATTCTCCCTATAGGGACAAAGGAGCACTCTTTGGTGGGCTTTTTTCCTTATTATATCGGGTATCTGGATGGATAAGAACAATGAGGTTTGTAGAGGGATTGATCTGATCTAATTGGACGCGGTTGAACAACTTTTTCTGGATAACTTTTCATCGGTTTTAAAATATTTTATTGTTCCTGTTTCCAGTTTATATACCAACTACAGCAAGGAAGGAGATGGCCCTGTTTCTGAAGAAAATTTCCTCGCTTGTGCCTGCTCTCCATCTTGTTGATATTGACGTTCCTCTGAACATTTTGTGTAAAGATGACCACAAGCTTGAGCAAGTGTTGGCCAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAGATTGACTCAATAGTGTCAATGCTTTGCCAGAAGCTTCAGTCTCAAAGGCGGTAGGTCGAAACTCTCCAGTTAGTTTGATTAGTAATTTACAATTTATTTTTATTTTTTACTCATGTAGTTTTTGGTTTTGATCAGCTATTGGATCGATTTTAGTAGGTGGGAGACTTTTGTTAATGATGATCTCTCCCGCAGCTTTTTGTCCATGGAAATCGTTACTGGAGGGCTGATAGAGGTGCGTCAGTTGATGGAATACTATTTCCATTGTCTTGCATTTTTGGCATAAATCTTTTTTTTAAAAAAACATTTTTAAAATTTGGGCTGATAATATGGAAGCTTCCACGTATGCTTGACTTGCTTAGTTTCTATAGATTATTTCAGTATGGCTTAGTTGAAAAACTCAAAGAATTAGGTTAACTCTTTAGTCTTTACCTCACTTTTGGGTTTGTTCTCTGCTCCAGACATTCACAAAAAAAAAAAAAAAAAATTGTAGCCTTGTGGGTTTGGTTTTTATATTGTTTTATGAGGCTAAGGCATGAACTAGAAGTTTTGAATTAGAATATATGACGGTGCTTTTTTATGTTGAATATTGTATGCTGCAACAATTGTTCCATATAATTTGTTGAGGCTCGCCTAAATTCGATTAGGACCAACCTTGTCAGATACATACATACACAGATCTGTACAGATGTCTTTTGCATTCATGTTGTCCAAACAATGGATTATTGGAAAATTACGATTAAATCGCCATAATCGGTTGAAACACGTATGGTATTGTTATTCTATCCGACACTGATGTTTTGAAATTACAAGTCGTATGTAATTTTTACTTTTCAACAAGACCACACTTGTTTGTTAGGCCTTTTTTTTAGATCTTTTGACATAGATTATGATAATTTCATACGAGTCTTACATGGTTGAGATTGACAATTTTACAACATGCAAGAAAGAGTGATCCCTTTGTTGTCAATTGATTACAGATTAGAAAACAAATCCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGTTAGTTGCATTGATATTTTCCCCTTTTTCATCTTTATTCATCTTTAGTTAAGAAGATAACTGATACGATCCCGAGATCGTTGAAAGTTTATTCAAGGCGAACCAAGAAGTGACGGATCCCTTTTTATTGCTTTATTAAATATAATTATGTTTTGTTATTTAAGTTGTATTGGGCTTTTGGGCCTAAATAGGGTTATTTACTAAATTATGTTAAATACTAGGTTTACTATAAATAGGATATGTTAGGCCTCTAGCAATTCATTGATTCAGTTGTCGTCTTTGTACTTGACTCTTTGAGAGATCCTCTCGAGAGATTATCATAGTTTAATAATATTTTGTGGTAGATTCTATCATTTTGGTATCAGAGCCATTTACCGATCCGGGAATGGTGAGTACTAAGATGGAAACGAGGATGCAAGAATGCGAAGAAGGGTCGACGGAATTGGCAAGAAGGCTGAAGGATGTAGAAACAAGGATGGAATTGTTTGAAGAGCGTTTAGGGAAACAGATGGATTTGAAATTCGAACAGCAAGATGCGAAGTTCGAGATGATCAACCGGAGCCTGCAGATGTTAATGGAATCGAAGCAAGGGGACAAAGGAAAGGGGCTGGCGATCGAGGCTGCGGGCGAGGGAGAGGGTGTGGTGCCCACTGGTGGGGCGTCTGCGGCTAGGGCGGCGGGCGAGAAAGGGGAGCCGGGGTCGAGCGCGGATGTCGGGCCTGCGGGGGGGGGGGGGGGGGGTGTGTCGGGCTGGAGACCGGCGTGGGCGACACGAGCAGGGCGGGCGGAGGGGCCTATCCGAGAGGAGCGGCCGACGGGATCTGTGCGGGCGGCGCAGGCAGAGGGGCTGGTGCGGGGGTTGGCGCGTCGGGCGGTGGCGCGGGGGCTGGGGCCCAAGCTAGGGGAGCGGCGGGCAGAGCGAGATTGGACCTCGCGAGTTCTGGGGGGCGTGCGGGGAAAGCGAGCGCGCGAGGCAGCGGGTGCGGGCCTGGTGGGGTGAGCGTGGGCGAGTGCGGGCTGGGGCGGTGAAGGCCGGGGATGGGGCGCGGCAAGAACGGGCCGAGGGGGGTCGGCTGGACCGGGTCGGTTCGGGCCGACCAGGTTGGACCGGGTCGGTTCGGGCCGACCAGGTTGGACCGGAGGGAGAATCTTTAGGCGTTGACCGACGGGGGTAATGGAATGGGTTTGGAGTTCGATCGACAGGGGTATTCTCGGGTCAGTGGAAGGGAAAACGGGTTTTCAGAGGAAGGGAGGATGCGCATCGGCTATGAAAGACCGATAGCGCATGACGGTTGGAACGATCGGGGTTGGGATGGTTGTAACCAAGACGGAGAGCGGAATGATTGGAGAGATAGACCGGGTCGCTGTGAGCGCGAAGGACCGGGAGTAGGCGGACGAGATGGACCCATGATAGATAGGAGGCTACGGAAATTGGAGATGCCGGTATTCAAAGGGCTAGCGGATGAGGACCCTGAGGGGTGGCTATGCCGTGTCGAAAGGTACTTCTGGGTGAATCGGCTGACGGGGCACGAACGGGTTGACGTCGCAGCCTTGTGTATGGAAGGAGAGGCACTAGAATGGTTGCAGTATAAGGAGGACCGAGCTCCGATTGCTTCTTGGAAGGAGTTTCGGGAATTGTTGTTGCATCGTTTCCAAGCGACGATCAATGACAATAAATATGCTAATTTGATGAGTCTGCAGCAAGTCGGTACCGTAAGGGAGTATCGCCGGTTGTTTGAAAAATATGCAAAGGGTATACGCGACATTAGTGCGAGTGCCTTGGAAGGGAAATGGGAGAGTGGTCTGAAGGCGGAAATTAGGAGTGAAATGAGGAAACTGAGGCCCGTGGGAATTCAGGACAAGAAGTTCATGGCACAGGTAATTGAGGATGACCTGGCTTTTCGCAACCAAGCAAAAGGAGTGGGCATTTCCACAGTAGTTAAACCGGGAATGGGATCGGGGGCGGTTAGTGCGAAGGTGGCGGGAGGATCAAATCTAAGAACTCTCGCCCTCACTCCCAACCGATCAACGCCATCGAATACCCTCACCCATGCAGTTCCTTATAAACGACTAACGGATAATGAAATCCGCATACGAAAAGATAAGGGACTATGCTTTAGATGCGATGAGAAGTTCGTTCCGAGACACCGATGTAAAAAGAAAGAGCTGCAGGCTCTAGAGATACTTGTAGTACGTGATCTGGTAGATTGTTTGGGAGATGAAGAAAGCGTTGAGTCACAGGATTATTTGGCCGAAGAGGAGAGTGTCGAGGACACTGGGGATACACCGAACATAGCAGCGCTATCCTTGCACTCAATGGCAGAACTGAGTTCTCCAAAAACACTGAAGTTACATGCTCGATACAGGGACAGGAAGTAGTAGTATTAATCGATAGTGGGGCTACGCATAACCTCATATCCGAAGTCATGGTTGCTAAATTGCAATTACCGGTAGAGCCGTCTGATGACTATGGCATTATGTTGGGTACTGGGGACTCTGTGAGAACTACTGGCATCTGTAAGAATGTGGAGCTTCAGTTGGTCAAAATGAGAATAGTGAATGATTTCTTGCCCTTACCTTTGGGTAGTGCGGATGTGATTTTGGGCGTGGTGTGGCTAGCAACTTTGGGAAAAATTGAATTTGAATACTGCGCACTTAAAATGAAATTCAAGCTGGGGTCAGGGCAGGTTGAATTGCAGGGCGAGCCACGGCTGGTCAAGGCCCAGGTGTCATTGAAATCTATGATGAAATCCTTACGTCCCGAAGAGCAAGGGATCCTGGTCGAGCTCAATATGATTGAAACCCCGATACCGTCTCGTGAACAGTCCGGGACTCTGCCTGACTTGTCTCAGGTACCCACAGAACTACACTCCGTACTTCGTTTATACTCATCGGTTTTTGAATCATTGACAGGTCTTCCCCCGCAACATAATTGCGACCATGCTATAGCGCTATTGCCCGGCAAGGCATCCGTAAATGTACATCCGTATAGGTACCCACAGTACCAGAAGAACGAGATTGAAAAATTAGTGGGAGAAATGTTATTGGCAGGTATTATCTGACCTAGCACGAGCCCGTTTTCAAGCCCAGCGTTATTGGTTAAAAAGAAGGATGGGAGTTGGCGTTTCTGTGTCGACTATCGCGCCCTGAATCAAGCAACAGTGCCCGATACGTATCCGATACCGTTGGTTGATGAATTGTTAGATGAGTTGCATGGGGCGACGATGTTTTCGAAAATTGATCTTAAGGCGGGTTACCATCAAATCCGTGTTAAGCCGGCCGATGTACAAAAAACTGCTTTTAGAACTCATGAGGGCCACTATGAATTTGTAGTCATGCCTTTCGGATTACGCAATGCTCCTGCAACATTTCAGTCGGTTATGAATGAGATTTTGCGACCGTTCCTACGCCGGTTTGTGCTGGTATTTTTTTATGACATCCTGATATACAGTGTGACCGAACATAAGGAGCACTTAGTCAGAGTTTTTGAAGTATTACAAACACATGCCCTGGTGGCCAATGCCAAGAAATGTCAGTTTGGACTGTGCAGGATTGAGTATTTGGGGCATTTTATATCAGCTGAAGGCGTAGCTACCGATCCGGAGAAAATTGCGGCCATGGTACGTTGGCCAAGCCCTAAAAAAATTAAAGACTTACGGGGATTTCTTGGGTTGACCGGTTATTACCGTCGTTTTGTGGCGAATTATGGGTCGATGACTTTTCCACTAACTCAGCTGTTAAAAAAGGGTAAGTTTGCATGGGGCCCTGCAGTGGAAGATTGTTTTCAGAGACTTAAGCATGCGATGAGTAGTGTGCCAGTATTACGATTGCCAGACTTTGATCAGCTGTTTGTGGTGGAGACTGATGCTTCCGGTATTGGCGTGGGTGCAGTCTTGATGCAACAGGGGCAACCGTTGGCTTATTTTAGTAAGGCCCTTCCTCTTACCCATCGCGTGAAGTCTGTTTATGAGCGTGAGCTGATGACTATCGTGTTTGCAGTACAGAGTTGGCGAGCTTACTTATTGGGACACCATTTTATTGTCCGTACGGACCAGAAGAGCCTTAAGTTCCTGCTAGAACAACGTGTAGTTGATGGAGAATACCAGCGCTGGATAGCGAAACTCCTGAGTTATGATTTCCATATTGAATACAAGAAAGGCTTAGAAAACAGAGCGGCAGATGCCCTATCTCGTATACCGTTGACCGGGGAATTGAGCATGTTGAGTTGTGTGGCTGGAGTTAACACAGCAGTGTTCACTCAACAAGTGAGGGAAGACGAAAAGTTGTTTTCTATTTACACCGCTGTGGTTGCAGGTGAGGTGAGTCCGCCAGGTTACTCTGTCATGGGTGATGTGCTATTATACCAGGGCCGGTTGGTGCTACCTCCGACATCACCTACGATCCCTCTGTTACTAAATGAGTTCCACGGGGGCGCCATCGGGGGGAATTTTGGGGTCCTCAAGACGTACCAACGCCTAGCTAAAGAAGTATATTGGCCTGGAATGAAGGCTCGCGTCCGCGCATTTGTGGCCGAGTGCTCGATTTGTGTCCAAGCGAAACATCTATCGTTATCGCCAGCTGGCCTTTTGCAACCATTACCGATCCCGGACAGGATTTGGGAAGACATTTCGATGGATTTTGTCGAAGGTCTGCCCCGTTCTGAAGGTTATGACACTATTTTTGTGGTGGTGGATCGACTTTCTAAGTACGCTCACTTTATACCCTTTAGACACCCATTTACTTCTCTCACAGTGTCACAGGTCTTCATCAGAGAAGTGGTCCGTTTGCACGGAGTGCCTAAGAGTATCGTGTCGGACCGTGACAAGATATTCACTAGCCTCCTCTGGGAAGAGATATTCAAGGCTTCTGGGACTCAGCTACGTCGTAGTACCACCTACCACCCACAGACTGATGGCCAAACTGAGGTCGTGAACCGTTGTTTAGAATCGTACTTAAGATGCTTTGTGTTGACACAGCCAAAGGCTTGGTACCGATGGCTGGCATGGGCTGAGTTCAGTTTCAATACGTCCTTTCATTCGTCCATGGGAATGACTCCTTTTGAAATTGTTTATGGGCGTTCTCCGCCGACGATTCTAGGGTATGATTATGGGGCTAGCCCGGTGGCGAGCGTGGATTCCTTAATGATGGAACGTGATAGAATGTTGGAGAAGCTTAAGGCAAATTTGTTGCGATCACAGCAATTGATGACGGATCGTGCTAACGCAAAGCGTCGGAATGTTCAGTTTGATGTGGACGATTTGGTGTATGTTAAGCTCCGACCTTATCGCCAGTCCTCCTTGGCGAAATTTCAACACCCCAAGTTAGCACCACGATTCAGCGGACCATATCGCGTGTTGGCTCGGGTGGGGCTAGTGGCGTACCGGTTGGACTTACCACAGACTGTGAGGATTCACCCGGTTTTTCATGTGTCGGTGCTGCGCAAGGCGGTTGGTTCCTCTGGTCTAGTATTCCCTACACCGGCTTTGGTGGGAGATGATCTAGGCATGCTCGTTTGTCCGAAGGCCGTTTTGGGTTTACGAGAGTCCTCGCAGGATGGCGGTTCGCGCCAGGTTTTGATACAATGGGAAGGATCCACTCCTGACGACGCTACTTGGGAGTCTGCTGCAGATCTCGAGCTCCAATTTTCGGACTTTCACCTTGAGGACAAGGTGGCTCTTTGGGGGGGGAGTATTGATACGATCCCGAGATCGTTGAAAGTTTACTCAAGGCGAACCAAGAAGTGACGGATCCCTTTTTATTGCTTTATTAAATATAATTCTGTTTTGTTATTTAAGTTGTATTGGGCTTTTGGGCCTAAATAGGGTTATTTACTAAATTAGGTTAAATACTAGGTTTACTATAAATAGGATATGTTAGGCCTCTAGCAATTCATTGATTCAGTTGTCGTCTTTGTACTTGACTCTTTGAGAGATCCTCTCGAGAGATTATCATAGTTTAATAATATTTTGTAGTAGATTCTATCAATAACCTTCTAGACTTCTATTTTGTAGGAAGAGAGACCACATATATCTGTAGCTTGGGCATTAGGAGACATTAGTAAATTATTGAGTCAAGCAGTTCGCGACGAAACGAGGAGGTTCGCGGTTAAGGAAACATTGAAGAGATGTATTTTCACCACCAAATTCAATGGCATTGAATGCAAGATAGGTAACAAAATGTATAAAATATGTAAATTTCATGATGCATAAAAAGATTATTATGAATTCTTACTAGTACCTGATTGCTTTCTTGTGTGACCATTAAATTGTTTTTAGTTATTTCGACTTTAAGATCTCTAACTTCCTTTTTGTAAATGGTGCCTCTTTATTATCTATTCTGATCTTTATGTGTGAAGCTTTATTTACTTCATTTTTAGGAATTTCAGGTTGTACATTATTGACATTAAATTTGATCTGATTGTGTAGAACAAATAATGATTAC

mRNA sequence

AATAATTGCATATATTTTTATTTCCGAGAACAGCACCAAGGTGAGAGATCTGATCGCGTGGGTGGGAATGGAAGCTCTGATAGCTACGTATGGAGGAAGCTCCTCAGTTGAAGAAGAAGAAGATGATGAAATTGTCTCATCAGCTTCAGCTTCACCACTGCCTCCGCCGCCTCTCTCGCTTCTTCATCCTCCAAATTCCATATGTGCTTTCCATGATTTCCCAATCGCCCAGCCCAGTAGGGTTCGAAGCTTCCCTCACGTTCAAGGAAACTATGCCCTTCATGTCTATATCCCAGTTTATATACCAACTACAGCAAGGAAGGAGATGGCCCTGTTTCTGAAGAAAATTTCCTCGCTTGTGCCTGCTCTCCATCTTGTTGATATTGACGTTCCTCTGAACATTTTGTGTAAAGATGACCACAAGCTTGAGCAAGTGTTGGCCAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAGATTGACTCAATAGTGTCAATGCTTTGCCAGAAGCTTCAGTCTCAAAGGCGCTATTGGATCGATTTTAGTAGGTGGGAGACTTTTGTTAATGATGATCTCTCCCGCAGCTTTTTGTCCATGGAAATCGTTACTGGAGGGCTGATAGAGATTAGAAAACAAATCCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGAAGAGAGACCACATATATCTGTAGCTTGGGCATTAGGAGACATTAGTAAATTATTGAGTCAAGCAGTTCGCGACGAAACGAGGAGGTTCGCGGTTAAGGAAACATTGAAGAGATGTATTTTCACCACCAAATTCAATGGCATTGAATGCAAGATAGGTAACAAAATGTATAAAATATGTAAATTTCATGATGCATAAAAAGATTATTATGAATTCTTACTAGTACCTGATTGCTTTCTTGTGTGACCATTAAATTGTTTTTAGTTATTTCGACTTTAAGATCTCTAACTTCCTTTTTGTAAATGGTGCCTCTTTATTATCTATTCTGATCTTTATGTGTGAAGCTTTATTTACTTCATTTTTAGGAATTTCAGGTTGTACATTATTGACATTAAATTTGATCTGATTGTGTAGAACAAATAATGATTAC

Coding sequence (CDS)

ATGGAAGCTCTGATAGCTACGTATGGAGGAAGCTCCTCAGTTGAAGAAGAAGAAGATGATGAAATTGTCTCATCAGCTTCAGCTTCACCACTGCCTCCGCCGCCTCTCTCGCTTCTTCATCCTCCAAATTCCATATGTGCTTTCCATGATTTCCCAATCGCCCAGCCCAGTAGGGTTCGAAGCTTCCCTCACGTTCAAGGAAACTATGCCCTTCATGTCTATATCCCAGTTTATATACCAACTACAGCAAGGAAGGAGATGGCCCTGTTTCTGAAGAAAATTTCCTCGCTTGTGCCTGCTCTCCATCTTGTTGATATTGACGTTCCTCTGAACATTTTGTGTAAAGATGACCACAAGCTTGAGCAAGTGTTGGCCAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAGATTGACTCAATAGTGTCAATGCTTTGCCAGAAGCTTCAGTCTCAAAGGCGCTATTGGATCGATTTTAGTAGGTGGGAGACTTTTGTTAATGATGATCTCTCCCGCAGCTTTTTGTCCATGGAAATCGTTACTGGAGGGCTGATAGAGATTAGAAAACAAATCCAAGTTGTTAATGAGGTTTATAAGCTCCACAATCTTCCTGAATTTTACAAGGAAGAGAGACCACATATATCTGTAGCTTGGGCATTAGGAGACATTAGTAAATTATTGAGTCAAGCAGTTCGCGACGAAACGAGGAGGTTCGCGGTTAAGGAAACATTGAAGAGATGTATTTTCACCACCAAATTCAATGGCATTGAATGCAAGATAGGTAACAAAATGTATAAAATATGTAAATTTCATGATGCATAA

Protein sequence

MEALIATYGGSSSVEEEEDDEIVSSASASPLPPPPLSLLHPPNSICAFHDFPIAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDVPLNILCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWETFVNDDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDISKLLSQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHDA

Homology

[Close]

BLAST of Sed0010204 vs. NCBI nr
Match: XP_008467330.1 (PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo])

HSP 1 Score: 444.9 bits (1143), Expect = 5.1e-121
Identity = 226/289 (78.20%), Postives = 248/289 (85.81%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASAS------------PLPPPPLSLLHPPNSICAF 60
           M+AL A+YGGSSS +EE D    SSAS S            PLPPPPLSLL+ PNS C  
Sbjct: 1   MDALRASYGGSSS-DEEVDTVSPSSASTSTPQFFDETVSSLPLPPPPLSLLNFPNSTCVL 60

Query: 61  HDFPIAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDV 120
            D PI Q +RVRSFPHVQGNYALHVYIPVY+PT ARKE+ALF+KKISSLVPALHLVDID+
Sbjct: 61  DDLPIDQATRVRSFPHVQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALHLVDIDI 120

Query: 121 PLNILCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWE 180
           PL++LCKDDHKLEQ LAREFHISLSRTVPIRVHQIDSIV+ML QKLQS RRYWIDFS+WE
Sbjct: 121 PLDVLCKDDHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWE 180

Query: 181 TFVNDDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDI 240
           TFVNDDLSR+FLSMEI+TGGL+EIRKQIQVVNEVYKLHNLPEFYKE RPHIS+AWALGD+
Sbjct: 181 TFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISLAWALGDV 240

Query: 241 SKLLSQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHD 278
           S++ SQAV +E +R AVKE  KRCIFTTKFNGIECKIG KMYKICKF D
Sbjct: 241 SQISSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFAD 288

[Close]

BLAST of Sed0010204 vs. NCBI nr
Match: XP_004143673.1 (U6 snRNA phosphodiesterase [Cucumis sativus] >KGN50332.1 hypothetical protein Csa_000253 [Cucumis sativus])

HSP 1 Score: 439.5 bits (1129), Expect = 2.2e-119
Identity = 225/289 (77.85%), Postives = 245/289 (84.78%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASAS------------PLPPPPLSLLHPPNSICAF 60
           M+AL A+YGGSSS +EE D     SAS S            PLPPPPLSLL+ PNS C  
Sbjct: 1   MDALRASYGGSSS-DEEVDTVSPPSASTSAPQFLDETVTFLPLPPPPLSLLNFPNSTCVL 60

Query: 61  HDFPIAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDV 120
            D PI Q +RVRSFPHVQGNYALHVYIPVY+PT ARKE+ALF+KKISSLVPALHLVDID+
Sbjct: 61  DDLPIDQATRVRSFPHVQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALHLVDIDI 120

Query: 121 PLNILCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWE 180
           PL++LCKDD KLEQ  AREFHISLSRTVPIRVHQIDSIV+ML QKLQS RRYWIDFS+WE
Sbjct: 121 PLDVLCKDDQKLEQAWAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWE 180

Query: 181 TFVNDDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDI 240
           TFVNDDLSR+FLSMEI+TGGL+EIRKQIQVVNEVYKLHNLPEFYKE RPHISVAWALGD+
Sbjct: 181 TFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISVAWALGDV 240

Query: 241 SKLLSQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHD 278
           S+L SQAV +E +R AVKE  KRCIFTTKFNGIECKIG KMYKICKF D
Sbjct: 241 SQLSSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFPD 288

[Close]

BLAST of Sed0010204 vs. NCBI nr
Match: XP_023549871.1 (U6 snRNA phosphodiesterase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 436.8 bits (1122), Expect = 1.4e-118
Identity = 224/293 (76.45%), Postives = 246/293 (83.96%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASAS----------------PLPPPPLSLLHPPNS 60
           MEAL+A+YGGSSS +E+ D    SSASAS                PLPPPPLSLL  PNS
Sbjct: 1   MEALMASYGGSSS-DEDVDTVSPSSASASASASLPQLSDETESFLPLPPPPLSLLDFPNS 60

Query: 61  ICAFHDFPIAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLV 120
             A  D PI Q +RVRSFPHVQGNYA+H+YIPVYIPT ARKE+ALFLKK+S LVPALHLV
Sbjct: 61  TSALDDLPIGQAARVRSFPHVQGNYAVHLYIPVYIPTNARKEVALFLKKLSKLVPALHLV 120

Query: 121 DIDVPLNILCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDF 180
           DID+PL+ILCKDDHKLEQ LAREFHISLSRTVPIRVHQIDSIV+ML QKLQSQRRYWIDF
Sbjct: 121 DIDIPLDILCKDDHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRRYWIDF 180

Query: 181 SRWETFVNDDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWA 240
           S+WETFVNDDLSR+FLSMEI+ GGL+EIRK IQVVNEVYKLHNLPEFYKE RPHIS+AWA
Sbjct: 181 SKWETFVNDDLSRTFLSMEIIAGGLMEIRKHIQVVNEVYKLHNLPEFYKEGRPHISLAWA 240

Query: 241 LGDISKLLSQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHD 278
           LGD+SKLLSQ+V DE ++  VKE  KRCIFT KFNGIECKIG KM+KICKF D
Sbjct: 241 LGDLSKLLSQSVHDEMKKSMVKEKSKRCIFTAKFNGIECKIGKKMFKICKFPD 292

[Close]

BLAST of Sed0010204 vs. NCBI nr
Match: XP_038875354.1 (U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida])

HSP 1 Score: 434.5 bits (1116), Expect = 6.9e-118
Identity = 221/291 (75.95%), Postives = 245/291 (84.19%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASAS--------------PLPPPPLSLLHPPNSIC 60
           M+AL A+YGGSSS +EE D    SSAS S              PLPPP  SLLH PNS  
Sbjct: 1   MDALRASYGGSSS-DEEADTVSPSSASTSASTPQLSDETVSFLPLPPPSPSLLHFPNSTS 60

Query: 61  AFHDFPIAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDI 120
              D PI Q +RVRSFPHVQGNYALH+YIPVY+PT  RKE+ALFLKK+SSLVPALHLVDI
Sbjct: 61  ILDDLPIDQATRVRSFPHVQGNYALHLYIPVYVPTNGRKEVALFLKKVSSLVPALHLVDI 120

Query: 121 DVPLNILCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSR 180
           DVPL++LCKDDHKLEQ LAREFH+SLSRTVPIRVHQIDSIV+ML QKLQSQRRYWIDFS+
Sbjct: 121 DVPLDVLCKDDHKLEQALAREFHVSLSRTVPIRVHQIDSIVTMLRQKLQSQRRYWIDFSK 180

Query: 181 WETFVNDDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALG 240
           WETFVNDDLSR+FLSMEI+TGGL+EIRKQIQ+VNEVYKLHNLPEFYKE RPHIS+AWA+G
Sbjct: 181 WETFVNDDLSRTFLSMEIITGGLMEIRKQIQIVNEVYKLHNLPEFYKEARPHISLAWAIG 240

Query: 241 DISKLLSQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHD 278
           D+SKLLSQAV +E +  AV +TLKRCIFTTKF GIECKIG K+YKICKF D
Sbjct: 241 DLSKLLSQAVHNEMKSSAVMQTLKRCIFTTKFKGIECKIGKKIYKICKFPD 290

[Close]

BLAST of Sed0010204 vs. NCBI nr
Match: XP_022969741.1 (U6 snRNA phosphodiesterase [Cucurbita maxima])

HSP 1 Score: 432.2 bits (1110), Expect = 3.4e-117
Identity = 223/297 (75.08%), Postives = 246/297 (82.83%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASAS--------------------PLPPPPLSLLH 60
           MEAL+A+YGGSSS +E+ D    SSASAS                    PLPPPPLSLL 
Sbjct: 1   MEALMASYGGSSS-DEDADTVSPSSASASASASASASLPQLSDETESFLPLPPPPLSLLD 60

Query: 61  PPNSICAFHDFPIAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPA 120
            PNS  A  D PI Q +RVRSFPHVQGNYA+H+YIPVYIPT ARKE+ALFLKK+S LVPA
Sbjct: 61  FPNSTSALDDLPIGQAARVRSFPHVQGNYAVHLYIPVYIPTNARKEVALFLKKLSKLVPA 120

Query: 121 LHLVDIDVPLNILCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRY 180
           LHLVDID+PL+ILCKDD KLEQ LAREFHISLSRTVPIRVHQIDSIV+ML QKLQSQRRY
Sbjct: 121 LHLVDIDIPLDILCKDDLKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRRY 180

Query: 181 WIDFSRWETFVNDDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHIS 240
           WIDFS+WETFVNDDLSR+FLSMEI+ GGL+EIRK+IQVVNEVYKLHNLPEFYKE RPHIS
Sbjct: 181 WIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKRIQVVNEVYKLHNLPEFYKEARPHIS 240

Query: 241 VAWALGDISKLLSQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHD 278
           +AWALGD+SKLLSQ+V DE ++  VKE  KRCIFT KFNGIECKIG KM+KICKF D
Sbjct: 241 LAWALGDLSKLLSQSVHDEMKKSMVKEKSKRCIFTAKFNGIECKIGKKMFKICKFPD 296

[Close]

BLAST of Sed0010204 vs. ExPASy Swiss-Prot
Match: Q91W78 (U6 snRNA phosphodiesterase OS=Mus musculus OX=10090 GN=Usb1 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.9e-20
Identity = 74/279 (26.52%), Postives = 122/279 (43.73%), Query Frame = 0


Query: 10  GSSSVEEEEDDEIVSSASASP--------LPPPPLSLLHPPNSICAF--------HDFPI 69
           G SS   E++ E V++  + P          P P   L  P+S+ +          D   
Sbjct: 8   GYSSSGSEDEAEAVAAGRSKPGTGFHRCGQNPVPSEKLPVPDSVLSMFPSTEEGPEDDSA 67

Query: 70  AQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDVPLNIL 129
               R+R+FPH +GN+A H+YIP       R  +   L +    VP L            
Sbjct: 68  KHGGRIRTFPHERGNWATHIYIPYEAKEDFRDLLDALLPRAQMFVPRL------------ 127

Query: 130 CKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWETFVND 189
                    VL  EFH+SLS++V +R H I   V +L  ++ S +R++   +R + + N 
Sbjct: 128 ---------VLMEEFHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQ 187

Query: 190 DLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDISKLLS 249
           + +R+F+ +E V+ G  +    +  V+   K  +L  FY++   HIS+AW +GD S  L 
Sbjct: 188 EKTRTFIGLE-VSSGHAQFLDLVSEVDRAMKEFDLTTFYQDPSFHISLAWCVGDASLQLE 247

Query: 250 QAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKI 273
                E +    +      +     N + CK GNK + +
Sbjct: 248 GQCLQELQEIVDEFEDSEMLLRVLANQVRCKSGNKFFSM 264

[Close]

BLAST of Sed0010204 vs. ExPASy Swiss-Prot
Match: Q5I0I5 (U6 snRNA phosphodiesterase OS=Rattus norvegicus OX=10116 GN=Usb1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.5e-18
Identity = 72/279 (25.81%), Postives = 125/279 (44.80%), Query Frame = 0


Query: 9   GGSSSVEEEEDDEIVSSAS----------ASPLP----PPPLSLLHP-PNSICAFHDFPI 68
           G SSS  E+E + + +  S           +PLP    P P S+L+  P++     D   
Sbjct: 8   GYSSSGSEDEAEAVAAGRSKPGSGLHRCGQNPLPSQRFPVPDSVLNMFPSTEEGPEDDSA 67

Query: 69  AQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDVPLNIL 128
               R+R+FPH +GN+A H+YIP       +  + + L +     P L            
Sbjct: 68  RHGGRIRTFPHERGNWATHIYIPYEANEEFQDLLDVLLPRAQMFAPRL------------ 127

Query: 129 CKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWETFVND 188
                    V   EFH+SLS++V +R H I   V +L  ++ S +R++   +R + + N 
Sbjct: 128 ---------VQMEEFHLSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQ 187

Query: 189 DLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDISKLLS 248
           + +R+F+ +E V+ G  +    +  V+ V K  +L  FY++   H+S+AW +GD    L 
Sbjct: 188 EKTRTFIGLE-VSSGHAQFLDMVSEVDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLE 247

Query: 249 QAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKI 273
              + E +    +      +       + CK GNK + +
Sbjct: 248 GQCQQELQEIVDEFEDSEMLLRVLAEQVRCKSGNKFFSM 264

[Close]

BLAST of Sed0010204 vs. ExPASy Swiss-Prot
Match: Q6DEF6 (U6 snRNA phosphodiesterase OS=Danio rerio OX=7955 GN=usb1 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-17
Identity = 67/215 (31.16%), Postives = 109/215 (50.70%), Query Frame = 0


Query: 58  RVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDVPLNILCKDD 117
           R+RSF H +GN+A +V+ P Y P  A      FL+ ++ ++ A    DI  PL +     
Sbjct: 81  RLRSFQHERGNWATYVFFP-YDPEEA------FLEVLNKMMAAAEAHDI--PLTV----- 140

Query: 118 HKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWETFVNDDLSR 177
                  + EFH+SLS+TV +R H I   V  +   L   ++++    + + + N + +R
Sbjct: 141 -------SEEFHLSLSKTVVLRHHWIQPFVQSIRTSLTHFQKFYCVAYKLKVYSNAEKTR 200

Query: 178 SFLSMEIVTG--GLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDISKLLSQA 237
           +FL ME+ TG   L+E+ K   +V+E  K  NL  FY++   HIS+AW +GD ++ L +A
Sbjct: 201 TFLGMEVSTGTPHLLELSK---IVDETMKEFNLSTFYEDPSFHISLAWCVGDQTERLKKA 260

Query: 238 VRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMY 271
              E +                 N + CK GNK++
Sbjct: 261 CLLELQGLIDAHEDGPFHARLNCNELRCKTGNKVF 271

[Close]

BLAST of Sed0010204 vs. ExPASy Swiss-Prot
Match: Q7ZYI9 (U6 snRNA phosphodiesterase OS=Xenopus laevis OX=8355 GN=usb1 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.2e-17
Identity = 80/269 (29.74%), Postives = 124/269 (46.10%), Query Frame = 0


Query: 12  SSVEEEEDDEIVSSASASPLPPPPLSLLHPPNSICAFHDFP--IAQPSRVRSFPHVQGNY 71
           SS EE+E +         P  PPP ++L     +    D         R+RSF H +GN+
Sbjct: 7   SSSEEDEGETSEPPGRRLPPLPPPTTVLRMFQDMEGDEDLDENTKHEGRIRSFKHERGNW 66

Query: 72  ALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDVPLNILCKDDHKLEQVLAREFH 131
           A +VYIP        +    FL  +  LV            ++  ++   L ++   EFH
Sbjct: 67  ATYVYIPF-------QPQEEFLDLLDELV------------SVAAENGVLLTKM--SEFH 126

Query: 132 ISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWETFVNDDLSRSFLSMEIVTGGL 191
           IS S+TV +R H I+  V  L  KL    R+     R + + N + +R+FL +E V+ G+
Sbjct: 127 ISQSQTVVLRHHWINPFVESLKDKLHCMYRFLCIAERIKVYTNQEKTRTFLGLE-VSVGM 186

Query: 192 IEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDISKLLSQAVRDETR----RFAV 251
             + + +  V+   +  NL  FY+E   H+S+AW +GD  + L  +   E +    RF  
Sbjct: 187 EHLLEVVSEVDRSLQEFNLQTFYQEPSFHVSLAWCVGDKYEKLKGSCLLELQKVIDRFED 246

Query: 252 KETLKRCIFTTKFNG--IECKIGNKMYKI 273
            +TL      T+FN   I CK GNK + I
Sbjct: 247 SDTL------TRFNAEEIRCKAGNKTFCI 247

[Close]

BLAST of Sed0010204 vs. ExPASy Swiss-Prot
Match: Q9BQ65 (U6 snRNA phosphodiesterase OS=Homo sapiens OX=9606 GN=USB1 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.6e-16
Identity = 74/281 (26.33%), Postives = 118/281 (41.99%), Query Frame = 0


Query: 3   ALIATYGGSSSVEEEEDDEIVSSASA------SPLP----PPPLSLLHP-PNSICAFHDF 62
           A +  Y  S S +E ED               SPLP    P P S+L+  P +     D 
Sbjct: 4   APLVGYSSSGSEDESEDGMRTRPGDGSHRRGQSPLPRQRFPVPDSVLNMFPGTEEGPEDD 63

Query: 63  PIAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDVPLN 122
                 RVR+FPH +GN+A HVY+P          + + L    + VP L          
Sbjct: 64  STKHGGRVRTFPHERGNWATHVYVPYEAKEEFLDLLDVLLPHAQTYVPRL---------- 123

Query: 123 ILCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWETFV 182
                      V  + FH+SLS++V +R H I   V  L  ++ S  R++   ++ + + 
Sbjct: 124 -----------VRMKVFHLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYT 183

Query: 183 NDDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDISKL 242
           N + +R+F+ +E VT G  +    +  V+ V +  NL  FY++   H+S+AW +GD    
Sbjct: 184 NQEKTRTFIGLE-VTSGHAQFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWCVGDARLQ 243

Query: 243 LSQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKI 273
           L      E +           +       + CK GNK + +
Sbjct: 244 LEGQCLQELQAIVDGFEDAEVLLRVHTEQVRCKSGNKFFSM 262

[Close]

BLAST of Sed0010204 vs. ExPASy TrEMBL
Match: A0A1S3CTB0 (U6 snRNA phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103504707 PE=3 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 2.5e-121
Identity = 226/289 (78.20%), Postives = 248/289 (85.81%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASAS------------PLPPPPLSLLHPPNSICAF 60
           M+AL A+YGGSSS +EE D    SSAS S            PLPPPPLSLL+ PNS C  
Sbjct: 1   MDALRASYGGSSS-DEEVDTVSPSSASTSTPQFFDETVSSLPLPPPPLSLLNFPNSTCVL 60

Query: 61  HDFPIAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDV 120
            D PI Q +RVRSFPHVQGNYALHVYIPVY+PT ARKE+ALF+KKISSLVPALHLVDID+
Sbjct: 61  DDLPIDQATRVRSFPHVQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALHLVDIDI 120

Query: 121 PLNILCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWE 180
           PL++LCKDDHKLEQ LAREFHISLSRTVPIRVHQIDSIV+ML QKLQS RRYWIDFS+WE
Sbjct: 121 PLDVLCKDDHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWE 180

Query: 181 TFVNDDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDI 240
           TFVNDDLSR+FLSMEI+TGGL+EIRKQIQVVNEVYKLHNLPEFYKE RPHIS+AWALGD+
Sbjct: 181 TFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISLAWALGDV 240

Query: 241 SKLLSQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHD 278
           S++ SQAV +E +R AVKE  KRCIFTTKFNGIECKIG KMYKICKF D
Sbjct: 241 SQISSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFAD 288

[Close]

BLAST of Sed0010204 vs. ExPASy TrEMBL
Match: A0A0A0KPH5 (U6 snRNA phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_5G167730 PE=3 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.0e-119
Identity = 225/289 (77.85%), Postives = 245/289 (84.78%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASAS------------PLPPPPLSLLHPPNSICAF 60
           M+AL A+YGGSSS +EE D     SAS S            PLPPPPLSLL+ PNS C  
Sbjct: 1   MDALRASYGGSSS-DEEVDTVSPPSASTSAPQFLDETVTFLPLPPPPLSLLNFPNSTCVL 60

Query: 61  HDFPIAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDV 120
            D PI Q +RVRSFPHVQGNYALHVYIPVY+PT ARKE+ALF+KKISSLVPALHLVDID+
Sbjct: 61  DDLPIDQATRVRSFPHVQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALHLVDIDI 120

Query: 121 PLNILCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWE 180
           PL++LCKDD KLEQ  AREFHISLSRTVPIRVHQIDSIV+ML QKLQS RRYWIDFS+WE
Sbjct: 121 PLDVLCKDDQKLEQAWAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWE 180

Query: 181 TFVNDDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDI 240
           TFVNDDLSR+FLSMEI+TGGL+EIRKQIQVVNEVYKLHNLPEFYKE RPHISVAWALGD+
Sbjct: 181 TFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISVAWALGDV 240

Query: 241 SKLLSQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHD 278
           S+L SQAV +E +R AVKE  KRCIFTTKFNGIECKIG KMYKICKF D
Sbjct: 241 SQLSSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFPD 288

[Close]

BLAST of Sed0010204 vs. ExPASy TrEMBL
Match: A0A6J1HYN3 (U6 snRNA phosphodiesterase OS=Cucurbita maxima OX=3661 GN=LOC111468846 PE=3 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.7e-117
Identity = 223/297 (75.08%), Postives = 246/297 (82.83%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASAS--------------------PLPPPPLSLLH 60
           MEAL+A+YGGSSS +E+ D    SSASAS                    PLPPPPLSLL 
Sbjct: 1   MEALMASYGGSSS-DEDADTVSPSSASASASASASASLPQLSDETESFLPLPPPPLSLLD 60

Query: 61  PPNSICAFHDFPIAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPA 120
            PNS  A  D PI Q +RVRSFPHVQGNYA+H+YIPVYIPT ARKE+ALFLKK+S LVPA
Sbjct: 61  FPNSTSALDDLPIGQAARVRSFPHVQGNYAVHLYIPVYIPTNARKEVALFLKKLSKLVPA 120

Query: 121 LHLVDIDVPLNILCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRY 180
           LHLVDID+PL+ILCKDD KLEQ LAREFHISLSRTVPIRVHQIDSIV+ML QKLQSQRRY
Sbjct: 121 LHLVDIDIPLDILCKDDLKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRRY 180

Query: 181 WIDFSRWETFVNDDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHIS 240
           WIDFS+WETFVNDDLSR+FLSMEI+ GGL+EIRK+IQVVNEVYKLHNLPEFYKE RPHIS
Sbjct: 181 WIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIRKRIQVVNEVYKLHNLPEFYKEARPHIS 240

Query: 241 VAWALGDISKLLSQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHD 278
           +AWALGD+SKLLSQ+V DE ++  VKE  KRCIFT KFNGIECKIG KM+KICKF D
Sbjct: 241 LAWALGDLSKLLSQSVHDEMKKSMVKEKSKRCIFTAKFNGIECKIGKKMFKICKFPD 296

[Close]

BLAST of Sed0010204 vs. ExPASy TrEMBL
Match: A0A6J1EQH7 (U6 snRNA phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111435686 PE=3 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 2.2e-117
Identity = 223/291 (76.63%), Postives = 244/291 (83.85%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASAS--------------PLPPPPLSLLHPPNSIC 60
           MEAL+A+YGGSSS +E+ D    SSASAS              PLPPPPLSLL  PNS  
Sbjct: 1   MEALMASYGGSSS-DEDVDTVSPSSASASASLPQLSDETESFLPLPPPPLSLLDFPNSTS 60

Query: 61  AFHDFPIAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDI 120
           A  D PI Q +RVRSFPHVQGNYALH+YIPVYI T ARKE+ALFLKK+S LVPALHLVDI
Sbjct: 61  ALDDLPIGQAARVRSFPHVQGNYALHLYIPVYITTNARKEVALFLKKLSKLVPALHLVDI 120

Query: 121 DVPLNILCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSR 180
           D+PL+ILCKDDHKLEQ LAREFHISLSRTVPIRVHQIDSIV+ML QKLQSQRRYWIDFS+
Sbjct: 121 DIPLDILCKDDHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRRYWIDFSK 180

Query: 181 WETFVNDDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALG 240
           WETFVNDDLSR+FLSMEI+ GGL+EIRK IQVVNEVYKLHNLPEFYKE RPHIS+AWALG
Sbjct: 181 WETFVNDDLSRTFLSMEIIAGGLMEIRKHIQVVNEVYKLHNLPEFYKEGRPHISLAWALG 240

Query: 241 DISKLLSQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHD 278
           D+SKLLSQ+V DE ++  VKE  KR IFT KFNGIECKIG KM+KICKF D
Sbjct: 241 DLSKLLSQSVHDEMKKSMVKEKSKRSIFTAKFNGIECKIGKKMFKICKFPD 290

[Close]

BLAST of Sed0010204 vs. ExPASy TrEMBL
Match: A0A6J1DNL4 (U6 snRNA phosphodiesterase OS=Momordica charantia OX=3673 GN=LOC111022878 PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 4.5e-115
Identity = 218/285 (76.49%), Postives = 246/285 (86.32%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASA--SP------LPPPPLSLLHPPNSICAFHDFP 60
           M+AL A+Y GSSS   +E+D+IVS+A +  SP      LPPPPLSLL  PNSI A HD P
Sbjct: 1   MDALKASYRGSSS---DEEDDIVSTAPSDLSPPPPPPSLPPPPLSLLDFPNSISALHDLP 60

Query: 61  IAQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDVPLNI 120
           IAQP+R RSFPHV+GNYALHVYIPVYIPTT++KE+ LFLKK+SSLVP+LHLVDIDVPL  
Sbjct: 61  IAQPTRFRSFPHVEGNYALHVYIPVYIPTTSKKEVVLFLKKVSSLVPSLHLVDIDVPLTS 120

Query: 121 LCKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWETFVN 180
           LCKD+HKLEQ LAREFHISLSRTVPIRVHQIDSIVSML QKLQ QRRYWIDFS+WETFVN
Sbjct: 121 LCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVSMLRQKLQCQRRYWIDFSKWETFVN 180

Query: 181 DDLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDISKLL 240
           DDLSR+FLSMEI+ GGL+EIRKQIQVVNEVYK HNLPEFYKEERPHIS+AWALGD+SKLL
Sbjct: 181 DDLSRTFLSMEIIAGGLMEIRKQIQVVNEVYKFHNLPEFYKEERPHISLAWALGDLSKLL 240

Query: 241 SQAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHD 278
           S+ V D+ +R ++  + KRCIFTTKF+GIECKIG K YKICK  D
Sbjct: 241 SRVVDDKMKRSSMAPS-KRCIFTTKFSGIECKIGKKTYKICKSPD 281

[Close]

BLAST of Sed0010204 vs. TAIR 10
Match: AT5G51170.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 321.2 bits (822), Expect = 8.0e-88
Identity = 169/284 (59.51%), Postives = 202/284 (71.13%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASAS-------PLPPPPLSLLHPPNSICAFHDFPI 60
           MEAL A+YG SSS  + +D    S  +A+        LPPPPL+LL    S  +   F  
Sbjct: 1   MEALRASYGDSSSDSDTDDLSPASPVTANSGEKDSISLPPPPLALLDSIVSTGSLDFFST 60

Query: 61  AQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDVPLNIL 120
               RVR+FPHV GNYALHVY+PV IP   +KE+  FLKK++S+VP LHLV+ DVPL+IL
Sbjct: 61  EPGVRVRNFPHVDGNYALHVYVPVCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSIL 120

Query: 121 CKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWETFVND 180
           CKDD K E+ L REFHISL R VP+RVHQI+S++SML QKLQ Q+RY IDF++WE FVND
Sbjct: 121 CKDDQKFERALGREFHISLGRNVPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVND 180

Query: 181 DLSRSFLSMEIVTGGLIEIRKQIQVVNEVYKLHNLPEFYKEERPHISVAWALGDISKLLS 240
           D +RSFLS+EI T GL EI KQI  VNEVYKLHNLPEFYK+ RPHIS+ WALGDI   L 
Sbjct: 181 DHTRSFLSLEITTSGLSEISKQIDAVNEVYKLHNLPEFYKDPRPHISLVWALGDIRTSLK 240

Query: 241 QAVRDETRRFAVKETLKRCIFTTKFNGIECKIGNKMYKICKFHD 278
            AV  E R+      ++  IFT+KF GIECKIGNK +KICK  D
Sbjct: 241 GAVDVELRKLRAGGCVQNRIFTSKFCGIECKIGNKTHKICKLPD 284

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BLAST of Sed0010204 vs. TAIR 10
Match: AT5G51170.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 166 Blast hits to 166 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 19; Plants - 35; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-56
Identity = 115/206 (55.83%), Postives = 146/206 (70.87%), Query Frame = 0


Query: 1   MEALIATYGGSSSVEEEEDDEIVSSASAS-------PLPPPPLSLLHPPNSICAFHDFPI 60
           MEAL A+YG SSS  + +D    S  +A+        LPPPPL+LL    S  +   F  
Sbjct: 1   MEALRASYGDSSSDSDTDDLSPASPVTANSGEKDSISLPPPPLALLDSIVSTGSLDFFST 60

Query: 61  AQPSRVRSFPHVQGNYALHVYIPVYIPTTARKEMALFLKKISSLVPALHLVDIDVPLNIL 120
               RVR+FPHV GNYALHVY+PV IP   +KE+  FLKK++S+VP LHLV+ DVPL+IL
Sbjct: 61  EPGVRVRNFPHVDGNYALHVYVPVCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSIL 120

Query: 121 CKDDHKLEQVLAREFHISLSRTVPIRVHQIDSIVSMLCQKLQSQRRYWIDFSRWETFVND 180
           CKDD K E+ L REFHISL R VP+RVHQI+S++SML QKLQ Q+RY IDF++WE FVND
Sbjct: 121 CKDDQKFERALGREFHISLGRNVPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVND 180

Query: 181 DLSRSFLSMEIVTGGLIEIRKQIQVV 200
           D +RSFLS+EI T GL E+  ++ ++
Sbjct: 181 DHTRSFLSLEITTSGLSEVLSKLMLL 206

The following BLAST results are available for this feature:

BLAST of Sed0010204 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467330.1	5.1e-121	78.20	PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo]	[more]
XP_004143673.1	2.2e-119	77.85	U6 snRNA phosphodiesterase [Cucumis sativus] >KGN50332.1 hypothetical protein Cs...	[more]
XP_023549871.1	1.4e-118	76.45	U6 snRNA phosphodiesterase [Cucurbita pepo subsp. pepo]	[more]
XP_038875354.1	6.9e-118	75.95	U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida]	[more]
XP_022969741.1	3.4e-117	75.08	U6 snRNA phosphodiesterase [Cucurbita maxima]	[more]

BLAST of Sed0010204 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91W78	6.9e-20	26.52	U6 snRNA phosphodiesterase OS=Mus musculus OX=10090 GN=Usb1 PE=2 SV=1	[more]
Q5I0I5	6.5e-18	25.81	U6 snRNA phosphodiesterase OS=Rattus norvegicus OX=10116 GN=Usb1 PE=2 SV=1	[more]
Q6DEF6	1.1e-17	31.16	U6 snRNA phosphodiesterase OS=Danio rerio OX=7955 GN=usb1 PE=2 SV=1	[more]
Q7ZYI9	7.2e-17	29.74	U6 snRNA phosphodiesterase OS=Xenopus laevis OX=8355 GN=usb1 PE=2 SV=1	[more]
Q9BQ65	3.6e-16	26.33	U6 snRNA phosphodiesterase OS=Homo sapiens OX=9606 GN=USB1 PE=1 SV=1	[more]

BLAST of Sed0010204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CTB0	2.5e-121	78.20	U6 snRNA phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103504707 PE=3 SV=1	[more]
A0A0A0KPH5	1.0e-119	77.85	U6 snRNA phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_5G167730 PE=3 SV=1	[more]
A0A6J1HYN3	1.7e-117	75.08	U6 snRNA phosphodiesterase OS=Cucurbita maxima OX=3661 GN=LOC111468846 PE=3 SV=1	[more]
A0A6J1EQH7	2.2e-117	76.63	U6 snRNA phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111435686 PE=3 SV...	[more]
A0A6J1DNL4	4.5e-115	76.49	U6 snRNA phosphodiesterase OS=Momordica charantia OX=3673 GN=LOC111022878 PE=3 S...	[more]

BLAST of Sed0010204 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51170.1	8.0e-88	59.51	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]
AT5G51170.2	1.2e-56	55.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027521	U6 snRNA phosphodiesterase Usb1	PFAM	PF09749	HVSL	coord: 77..300 e-value: 2.0E-56 score: 191.1
IPR027521	U6 snRNA phosphodiesterase Usb1	PANTHER	PTHR13522	UNCHARACTERIZED	coord: 1..304
IPR027521	U6 snRNA phosphodiesterase Usb1	HAMAP	MF_03040	USB1	coord: 4..302 score: 26.822155
None	No IPR available	GENE3D	3.90.1140.10	Cyclic phosphodiesterase	coord: 88..300 e-value: 8.4E-55 score: 187.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010204.1	Sed0010204.1	mRNA
Sed0010204.2	Sed0010204.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0034477	U6 snRNA 3'-end processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:1990838	poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends
molecular_function	GO:0004518	nuclease activity