Sed0010100 (gene) Chayote v1

Overview


Name	Sed0010100
Type	gene
Organism	Sechium edule (Chayote v1)
Description	39S ribosomal protein L47, mitochondrial
Location	LG08: 839644 .. 844168 (-)
RNA-Seq Expression	Sed0010100
Synteny	Sed0010100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGTGTAAAAAATTGTCGGTATTTTACGTATTGCCCTCAGTTCTCAGTTTCCTCGCACTTGGCCAGACTTGCGTCGCCACCACTTCCTCGTTGCCGCTCACTCGCCGGAGCTCAGATCGCCGCCTCTTGCCGGAGAAACGCCTTGTCTGAGCCTCCGCAGTTCACCGACGATTCTTCAGAGTACAGTTCTTCGCACTGTAATACGATCACGACGTTCAGAATCGGAGGTGAGGGATCTCGAATCTCAAAATAGGGCTAATTTGGAACTGGAGCCGTTTTAATTCGAAATCATTCGAGATTTTAGATTCTATTGTTTTTTATTCAAACCAAACACATAAAATGATTTGAAATCTGGAGTTTTCAATCATAGGGTAAAGAATTTTTGTTGAAAAATGAACTGAATCAAACTAGGGTTATGTGTTTTAGGAAGCGTAAATTAAATCTTTGTGTTTTGTTTTCAGATTGTATTTTATTTTGATTGTTGTAGGGTTGTATGTATTCTCACTGTTTTTAGTCTTTCATCAAGCAGCATTGGTGCAGCCATGTTTCTGAGACGATTGTTTGGGAGGACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGGTACAGCTGCTGCTGCTGCTGCAGCTAGGACAGAGTACAATCCGCTCGAGGCGTTTTTCGAGACAGATAAAAGTGCTGAGGATGACAAGCCTGTCGTATATGGTATATTCTTATTATTCATTTGAGCTTTACTCTTTTTTTGCTATCTATGAATTGTTTTTTGTATCATTCATTTTGCAAGAATTTGCCTCAATGTATTGTTTGTTGGGGAATGGAAATTTAAAGTCGGGTGTCTGATCTAATGATGTGATATTTGATCTTGAGGTCATGGAGGGTCCACTCACTCTCAATGGGAATGAATACTAATTGTTCGGATACATCCAATTCACCTACAAAAAATACCCTCCTTGTTGCGCATGGAGTTTGAATGAATCTTTTGAGATATTAGAACTGGTAAACACATGGGTTGACATAGTGGTCTATAAATACAGGCATGGAAGGAATGAGGTCAAACTATGATGGTTACTAGTTTAACATTTAATATCCTATGATTTACCTCGATAGTCAAATATAATCGAGTCAAGGCTGTTATCCCATGAAAATAGTTGAGGTGTGTGCAAGTTGACTCATATTTAAATGTATGCATACATATTAGGAAAGGTTTGGGAGGATTTGGTCCAGTTTGATTATGTTTAATTAATTGGTCACCAGGGACCGTGGATTCTTCTTCATTGATTAAACATGGCAAATGTGACAAGATTTTATATGAAATAATAGGCGAAAAGGAGTAATCAGCAATAAGTATGATAAAGTGATTAGACATTCAAAGTCTAATACTTTAGGGTGTGTTTGTGGCACCTAGAATAAGGGAGAGAATGAGAATGATTCCCGTGGTTAGGCCACCGGGACCGGGAGTCATTCTCCCATAATCACGTTTTCAAAAAATCACCTTTTTCATTCTCCTCCTATCTACTTTTCATTCTCCCCACAACAACTTTTTATACATCACATCACTATTTTTCACTCCCATTATAATCATTATTTTATTTTCCTTATAATCATTTCCTTTACCCAAACACAAATAATCATCTTTCCCATAATCATTTTCTTCATCCCAAATACAAATAATCATTCTCCCCATAATTATTCCCTTTTCTATTCTCCTCCTAATTCTCATTCCCCCGTAATCATTAACATTCTCCTTCCCCCAAACACACCCTTAGAGACACCAAAGTACTCCAAGCAATTATATATTCAGTTTCATCATAGTTTCAATAGACCAGCGTTCTTCCTTCTTCGTTTTCCTTGAAAACGTGGTTAGGAAAATTATCTGATTGGTTGTGAAGTGAAATAAGAGCAAGGACCTTAGACAGGTGTGTGAGCTGCCATGAATATGTATGATCTATCTGTATATCTTATATACCCGTGTTTGTCAGTGCTTTCTTATTGCTGAACCTGTGTTATGTGCGTTGTGAGATCAGCCCTAAATAATTGTGGACTTTTTTTTTGTTTATTTAATTTCTAAACTGTTCTGTGTGCACATGAGAAACTAGTGTTTTGTGAATATTTTAGTATGATGTCTGTTCGTGTGGGTGTGGTTAGCGCAACTCTCTTTGTAGGCCTACTTATGATGAATAAAGATGAGTGGTAAAGTAAAGAAAAAAAAAAACCAAAATCAAAGCATGGAGTAGAAAATGTTATGAGATTTGGAAGGTTCTATCTACTTTTCATTCTCCCCACAACAACTTTTTATACATCACATCACTATTTTTCACTCCCATTATAATCATTATTTTATTTTCCTTATAATCATTTCCTTTACCCAAACACAAATAATCATTTTTCCCATAATCATTTTCTTCATCCCAAATACAAATAATCATTCTCCCCATAATTATTCCCTTTTCTATTCTCCTCCTAATTCTCATTCCCCCGTAATCATTAACATTCTCCTTCCCCCAAACACACCCTTAGAGACACCAAAGTACTCCAAGCAATTATATATTCAGTTTCATCATAGTTTCAATAGACCAGCGTTCTTCCTTCTTCGTTTTCCTTGAAAACGTGGTTAGGAAAATTATCTGATTGGTTGTGAAGTGAAATAAGAGCAAGGACCTTAGACAGGTGTGTGAGCTGCCATGAATATGTATGATCTATCTGTATATCTTATATACCCGTGTTTGTCAGTGCTTTCTTATTGCTGAAACTGTGTTATGTGCGTTGTGAGATCAGCCCTAAATAATTGTGGACTTTTTTTTTGTTTATTTAATTTCTAAACTGTTCTGTGACATGAGAAACTAGTGTTTTGTGAATATTTTAGTATGATGTCTGTTCGTGTGGGTGTGGTTAGCGCAACTCTCTTTGTAGGCCTACTTATGATGAATAAAGATGAGTGGTAAAGTAAAGAAAAAAAAAAAAACCAAAATCAAAGCATGGAGTAGAAAATGTTATGAGATTTGGAAGGTTCTCTCTCTTGGTGGCCACATATATAGGATGGGAATAGCCTTAAAATTGTTCGGCTCTAATGTTACAGGCTTAGATACTTGTGTGAGACCCAAATACTCTTGGATGACAAAAGTATCCTGGTGGCCTCCCATATGACTGTATCTTATGAATTTTGCAATATATAATTGTCAATTGTGTACATACAGATTATTCTAAATTTTTGCTAGAGAAAAGGGTCTTGTAGCTTGGAAGTTTTTTTTTTCAGTATGCAACGATTGAATTTATATATATATATATATATTTTGAAATAAGGGTAAGTACGCCCGTCCCTAGGTCAGGCACTGGGAGATATCGAAGGATTAATGTCATAGTTGAGTCTCGAACGTGGGACCTTGAGGGGAGTATATCCTCAAAGCCCAAGTCTTCAAATACTGTGCCACCCCTCAAATCTCAAGATTATTCTGAATTTATATTATAACTTTATAGAAAAGGCCAAAGGACTAAACTGGCCAAAAACTCACCTTTCTTGTTGAAGACCCATTAAATCAACTCTAAAGTGGCCTCTAGAATCTCATGACTGAGATTTTGTGCGTTCTTTCAAAGACATTATTGAGATTTTCATTGCAACTTCTCTGCTGGCAGGTCGAAGTTGGAAGGCTTCAGAACTAAGGCTGAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTTTTGAAGGAGAAAAACATGTTGATGACTCAGCGGGAGATGCTTCATGCACAAAATCTAAGGTTTCCGAATCCGGAACGCATTCCCAAGGTAAGCTTGATAGAACTTTTGTATTACTACTGTTCAACTCAAATTTGTTTTTGTAGAATTTGTTTCCCTTCTCCTTCTCCAATAATTGATAAGAACTATTCTATGATTGTAATTTAGGTTAGGAAGTCAATGTGCCGAATCAAGCAAGTGCTTACCGAGAGAGCCATCGAAGATCCAGATCCCCGTAGATCTGCAGAGATGAGGAGGATGGTAAATGCTTTGTGATAAACTAGTTGGCGTTTCGAAGTCAGCCTCGTACGCAATGGAGTTTATTCTTCTGGATACGAAGGGAGAAAAAGTTAGTCTGATGGTGAATGACAATTATGCAAACGCCCTTTCAATGCAGTTCATTCTGTTCTTGAGGATCTTATTAGAAGCTAAGAAATTGTTTTATGATCTCTACTCTAGATTTATCAACAGTAATCAAAACTTTTAGAGGTGTTTTTATTTGTGCCATCATTATCATGGCCAGAGTTTATTCTAGAAGATTTTCAATACAGAACATTTAGATCTGATGTGTGTGTGGAGCAGGTTGAAAATAAAAGAGTTTGACAAAAAAGAAAATATTGATGCTTTGATGTGCTGTTAGGAAAATGAAAGTTTTGTCATGAATGTTAGGACCATAAAAGCACAAGGTAGAATGTGTGTTGATGGTTTGGCTTTGATGATCCTCTGCTTTGCTCATTCCAAGTCTATAATTTCTATTCCCTACACTAGAGGGGGCAAACCCAC

mRNA sequence

ATTTGTGTAAAAAATTGTCGGTATTTTACGTATTGCCCTCAGTTCTCAGTTTCCTCGCACTTGGCCAGACTTGCGTCGCCACCACTTCCTCGTTGCCGCTCACTCGCCGGAGCTCAGATCGCCGCCTCTTGCCGGAGAAACGCCTTGTCTGAGCCTCCGCAGTTCACCGACGATTCTTCAGAGTACAGTTCTTCGCACTGTAATACGATCACGACGTTCAGAATCGGAGCATTGGTGCAGCCATGTTTCTGAGACGATTGTTTGGGAGGACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGGTACAGCTGCTGCTGCTGCTGCAGCTAGGACAGAGTACAATCCGCTCGAGGCGTTTTTCGAGACAGATAAAAGTGCTGAGGATGACAAGCCTGTCGTATATGGTCGAAGTTGGAAGGCTTCAGAACTAAGGCTGAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTTTTGAAGGAGAAAAACATGTTGATGACTCAGCGGGAGATGCTTCATGCACAAAATCTAAGGTTTCCGAATCCGGAACGCATTCCCAAGGTTAGGAAGTCAATGTGCCGAATCAAGCAAGTGCTTACCGAGAGAGCCATCGAAGATCCAGATCCCCGTAGATCTGCAGAGATGAGGAGGATGGTAAATGCTTTGTGATAAACTAGTTGGCGTTTCGAAGTCAGCCTCGTACGCAATGGAGTTTATTCTTCTGGATACGAAGGGAGAAAAAGTTAGTCTGATGGTGAATGACAATTATGCAAACGCCCTTTCAATGCAGTTCATTCTGTTCTTGAGGATCTTATTAGAAGCTAAGAAATTGTTTTATGATCTCTACTCTAGATTTATCAACAGTAATCAAAACTTTTAGAGGTGTTTTTATTTGTGCCATCATTATCATGGCCAGAGTTTATTCTAGAAGATTTTCAATACAGAACATTTAGATCTGATGTGTGTGTGGAGCAGGTTGAAAATAAAAGAGTTTGACAAAAAAGAAAATATTGATGCTTTGATGTGCTGTTAGGAAAATGAAAGTTTTGTCATGAATGTTAGGACCATAAAAGCACAAGGTAGAATGTGTGTTGATGGTTTGGCTTTGATGATCCTCTGCTTTGCTCATTCCAAGTCTATAATTTCTATTCCCTACACTAGAGGGGGCAAACCCAC

Coding sequence (CDS)

ATGTTTCTGAGACGATTGTTTGGGAGGACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGGTACAGCTGCTGCTGCTGCTGCAGCTAGGACAGAGTACAATCCGCTCGAGGCGTTTTTCGAGACAGATAAAAGTGCTGAGGATGACAAGCCTGTCGTATATGGTCGAAGTTGGAAGGCTTCAGAACTAAGGCTGAAGTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTTTTGAAGGAGAAAAACATGTTGATGACTCAGCGGGAGATGCTTCATGCACAAAATCTAAGGTTTCCGAATCCGGAACGCATTCCCAAGGTTAGGAAGTCAATGTGCCGAATCAAGCAAGTGCTTACCGAGAGAGCCATCGAAGATCCAGATCCCCGTAGATCTGCAGAGATGAGGAGGATGGTAAATGCTTTGTGA

Protein sequence

MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL

Homology

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BLAST of Sed0010100 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida])

HSP 1 Score: 248.1 bits (632), Expect = 4.7e-62
Identity = 125/143 (87.41%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWK 60
           MFL R+FGRTFLAAARSETSS T AAAA AR  YNPLE FFE D+S +DDKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATGAAAATARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNLRFPNPERIPKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIEDPDPRRSAEMRRMVNAL 144
           TERAI++PDPRRSAEM+RM+NAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of Sed0010100 vs. NCBI nr
Match: XP_004138121.1 (39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypothetical protein Csa_013761 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 1.8e-61
Identity = 124/143 (86.71%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWK 60
           MFL R+FGRTFLAAARSETSS TAAAAA ART YNPLE FFE D+S +D KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 121 TERAIEDPDPRRSAEMRRMVNAL 144
           TERAI++PDPRRSAEM+RM+NAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of Sed0010100 vs. NCBI nr
Match: XP_023530690.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530691.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530692.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530693.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530694.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530695.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530697.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.4 bits (625), Expect = 3.1e-61
Identity = 124/143 (86.71%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWK 60
           MFL R+FGRTFLAAARSE S+ TAAA + ART YNPLE FFE  +S EDDKPVVYGRSWK
Sbjct: 1   MFLTRIFGRTFLAAARSEASAATAAAGSTARTGYNPLEEFFEVHRSPEDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNLRFPNPERIPKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIEDPDPRRSAEMRRMVNAL 144
           TERAI++PDPRRSAEM+RMVNAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMVNAL 143

[Close]

BLAST of Sed0010100 vs. NCBI nr
Match: XP_008453113.1 (PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo])

HSP 1 Score: 244.2 bits (622), Expect = 6.8e-61
Identity = 124/143 (86.71%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWK 60
           MFL R+FGRTFLAAARSETSS TAAAAA ART YNPLE FFE D+S +D KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNLRFPNPERI KVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVL 120

Query: 121 TERAIEDPDPRRSAEMRRMVNAL 144
           TERAI++PDPRRSAEM+RM+NAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of Sed0010100 vs. NCBI nr
Match: XP_028117216.1 (39S ribosomal protein L47, mitochondrial [Camellia sinensis] >XP_028117217.1 39S ribosomal protein L47, mitochondrial [Camellia sinensis])

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 122/143 (85.31%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWK 60
           MF+ R+FGRT  AAA+SE S+  AAAA+ ART YNPLE FFE D+SAEDDKPVVYGRSWK
Sbjct: 1   MFISRVFGRTLFAAAKSEASAAAAAAASTARTSYNPLEEFFEVDRSAEDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNLRFPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKHVL 120

Query: 121 TERAIEDPDPRRSAEMRRMVNAL 144
           TERAIE+PDPRRSAEM+RMVNAL
Sbjct: 121 TERAIEEPDPRRSAEMKRMVNAL 143

[Close]

BLAST of Sed0010100 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-13
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 37  LEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQ 96
           LE FF+  K+  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  +    Q
Sbjct: 66  LEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 125

Query: 97  NLRFPNPERIPKVRKSMCRIKQVLTER 124
            L  P+PER+ KV  SM  + +V+ ER
Sbjct: 126 RLPMPSPERLEKVVDSMDNVDKVVQER 151

[Close]

BLAST of Sed0010100 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.5e-13
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 37  LEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQ 96
           LE FF+  K+  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  +    Q
Sbjct: 66  LEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 125

Query: 97  NLRFPNPERIPKVRKSMCRIKQVLTER 124
            L  P+PER+ KV  SM  + +V+ ER
Sbjct: 126 RLPMPSPERLEKVVDSMDALDKVVQER 151

[Close]

BLAST of Sed0010100 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-12
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 37  LEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQ 96
           LE FF+  K+   +K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  +    Q
Sbjct: 64  LEEFFDDPKNWGQEK-VKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 123

Query: 97  NLRFPNPERIPKVRKSMCRIKQVLTER 124
            L  P+PER+ KV  SM  + +V+ ER
Sbjct: 124 RLPMPSPERLDKVVDSMDALDKVVQER 149

[Close]

BLAST of Sed0010100 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.7e-10
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 32  TEYNPLEAFFETDKSA--EDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQ 91
           ++ +PL  FF  DK A     +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQ
Sbjct: 33  SDTHPLWNFFR-DKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQ 92

Query: 92  REMLHAQNLRFP--NPERIPKVRKSMCRIKQVLTER 124
           R  +    L  P  + ER+  V K+M  IK VL ER
Sbjct: 93  RAEMKRLQLTIPKASNERVLAVNKTMAAIKFVLWER 127

[Close]

BLAST of Sed0010100 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-09
Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 40  FFETDKSAEDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQN 99
           FF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     +   
Sbjct: 102 FFQNRTMVVNSPPEIAKHGRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERNKSG 161

Query: 100 LRFPNP---ERIPKVRKSMCRIKQVLTERAIEDPDPRRSAE 136
           L F      ER   VR++M  IK VLTER     D  + AE
Sbjct: 162 LGFGEAEMRERDNAVRQTMRSIKHVLTERFYTWEDAVKVAE 202

[Close]

BLAST of Sed0010100 vs. ExPASy TrEMBL
Match: A0A0A0LS48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 8.7e-62
Identity = 124/143 (86.71%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWK 60
           MFL R+FGRTFLAAARSETSS TAAAAA ART YNPLE FFE D+S +D KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 121 TERAIEDPDPRRSAEMRRMVNAL 144
           TERAI++PDPRRSAEM+RM+NAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of Sed0010100 vs. ExPASy TrEMBL
Match: A0A1S3BWK4 (39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.3e-61
Identity = 124/143 (86.71%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWK 60
           MFL R+FGRTFLAAARSETSS TAAAAA ART YNPLE FFE D+S +D KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNLRFPNPERI KVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVL 120

Query: 121 TERAIEDPDPRRSAEMRRMVNAL 144
           TERAI++PDPRRSAEM+RM+NAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]

BLAST of Sed0010100 vs. ExPASy TrEMBL
Match: A0A5N6RPC1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_019082 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.3e-60
Identity = 123/143 (86.01%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWK 60
           MFL R+FGRT  AAA+SETS+ TAAAA+AAR   NPLE FFE D+S +DDKPVVYGRSWK
Sbjct: 1   MFLSRIFGRTLFAAAKSETSAATAAAASAAR---NPLEEFFEVDRSVDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQR+MLHAQNLRFPNPERIPKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 121 TERAIEDPDPRRSAEMRRMVNAL 144
           TERAIEDPDPRRSAEM+RM+N+L
Sbjct: 121 TERAIEDPDPRRSAEMKRMINSL 140

[Close]

BLAST of Sed0010100 vs. ExPASy TrEMBL
Match: A0A803QYM8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.8e-60
Identity = 121/143 (84.62%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWK 60
           MFL R FGRT LAAA+SET +  AAAA++ARTEYNPL  FFE D+S ED+KPVVYGRSWK
Sbjct: 1   MFLTRYFGRTLLAAAKSETPAAAAAAASSARTEYNPLAEFFEVDRSTEDEKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDL KLWYVLLKEKNMLMTQR+ML+AQNLRFPNPER+PKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERVPKVRKSMCRIKQVL 120

Query: 121 TERAIEDPDPRRSAEMRRMVNAL 144
           TERAIE+PDPRRSAEM+RMVNAL
Sbjct: 121 TERAIEEPDPRRSAEMKRMVNAL 143

[Close]

BLAST of Sed0010100 vs. ExPASy TrEMBL
Match: A0A2I4FJ69 (39S ribosomal protein L47, mitochondrial OS=Juglans regia OX=51240 GN=LOC108999277 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.8e-60
Identity = 122/143 (85.31%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWK 60
           MFL R+FGRT  AAA+SETS+ TAAAA+AAR   NPLE FFE D+S +DDKPVVYGRSWK
Sbjct: 1   MFLSRIFGRTLFAAAKSETSAATAAAASAAR---NPLEEFFEADRSVDDDKPVVYGRSWK 60

Query: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVL 120
           ASELRLKSWDDL+KLWYVLLKEKNMLMTQR+MLHAQNLRFPNPER+PKVRKSMCRIKQVL
Sbjct: 61  ASELRLKSWDDLHKLWYVLLKEKNMLMTQRQMLHAQNLRFPNPERVPKVRKSMCRIKQVL 120

Query: 121 TERAIEDPDPRRSAEMRRMVNAL 144
           TERAIEDPDPRRSAEM+RM+NAL
Sbjct: 121 TERAIEDPDPRRSAEMKRMINAL 140

[Close]

BLAST of Sed0010100 vs. TAIR 10
Match: AT1G07830.1 (ribosomal protein L29 family protein )

HSP 1 Score: 212.6 bits (540), Expect = 2.1e-55
Identity = 110/144 (76.39%), Postives = 123/144 (85.42%), Query Frame = 0


Query: 1   MFLRRLFGRTFLAAARSETSSGTAAAAAAA-RTEYNPLEAFFETDKSAEDDKPVVYGRSW 60
           MFL R  GR FLAAA + + S TAAAAA+  RT  NPLE FFE D+S ++DKPVVYGR W
Sbjct: 1   MFLTRFVGRRFLAAASARSESTTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVYGRGW 60

Query: 61  KASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQV 120
           KASELRLKSWDDL KLWYVLLKEKNMLMTQR+ML AQN++FPNPERIPKVR+SMCRIK V
Sbjct: 61  KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHV 120

Query: 121 LTERAIEDPDPRRSAEMRRMVNAL 144
           LTERAIE+PD RRSAEM+RMVN +
Sbjct: 121 LTERAIEEPDSRRSAEMKRMVNGM 144

The following BLAST results are available for this feature:

BLAST of Sed0010100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879389.1	4.7e-62	87.41	39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S...	[more]
XP_004138121.1	1.8e-61	86.71	39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypotheti...	[more]
XP_023530690.1	3.1e-61	86.71	39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_008453113.1	6.8e-61	86.71	PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo]	[more]
XP_028117216.1	1.2e-60	85.31	39S ribosomal protein L47, mitochondrial [Camellia sinensis] >XP_028117217.1 39S...	[more]

BLAST of Sed0010100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K2Y7	3.2e-13	48.28	39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1...	[more]
Q08DT6	5.5e-13	48.28	39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV...	[more]
Q9HD33	2.1e-12	47.13	39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 ...	[more]
P87232	5.7e-10	43.75	54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972...	[more]
Q2H080	2.8e-09	40.59	54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205...	[more]

BLAST of Sed0010100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS48	8.7e-62	86.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1	[more]
A0A1S3BWK4	3.3e-61	86.71	39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926...	[more]
A0A5N6RPC1	1.3e-60	86.01	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_019082 PE=3 SV=1	[more]
A0A803QYM8	2.8e-60	84.62	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2I4FJ69	2.8e-60	85.31	39S ribosomal protein L47, mitochondrial OS=Juglans regia OX=51240 GN=LOC1089992...	[more]

BLAST of Sed0010100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07830.1	2.1e-55	76.39	ribosomal protein L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038340	MRP-L47 superfamily, mitochondrial	GENE3D	6.10.330.20		coord: 31..132 e-value: 7.6E-32 score: 111.4
IPR010729	Ribosomal protein L47, mitochondrial	PFAM	PF06984	MRP-L47	coord: 37..123 e-value: 4.6E-34 score: 116.4
IPR010729	Ribosomal protein L47, mitochondrial	PANTHER	PTHR21183	RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED	coord: 1..142
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 62..123 e-value: 1.73581E-11 score: 54.0307
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 59..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010100.1	Sed0010100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005761	mitochondrial ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome