Sed0010082 (gene) Chayote v1

Overview


Name	Sed0010082
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG11: 25145519 .. 25146905 (-)
RNA-Seq Expression	Sed0010082
Synteny	Sed0010082

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACGGCTTCTGGAACCTTCCATTTCCCCAAACTCATATTTTTGGATTTTCTGTTGAACGCCTTCGTGTCTTCCGTTTCAGATCCTCTTCTCAATCGATCGGCGGTTCCGTTCTTCTCAATCAAAGGTTTGTGTTTAATTTCTAGTTCGTTTTTGCTATGGGTTGTTCGTGTTGAATTTGATTCCGTTGCCCTCTGTTTGGGGATGTTCAAACCCTAGAATTCCCCGATCCATTGTTAAGATTTTGATTGCCCTTTAGAATCGAACATTGGTTGAACGATTGTTGATTCAGTTTTGTGGGTTTCTTTTCTTTTTTTCTGTTTATCTCAATTTTGTGGCTTAATTTGATTTACTAGGTAAAGATATGGCGAGTGGATTTGGGGAATCGACGAGTAGGCAACCCCAAACCCCTTCCTGTTCCGACAACAATGGCGATGCTAGTAATTTTGAGTGCAATATTTGCCTCGATTTAGCTCAAGACCCTATTGTAACCCTATGCGGTCATCTTTTTTGCTGGCCCTGTCTTTATAAGTGGCTGCACATTCGTTCCCATCCCCATGAATGTCCAGTTTGTAAGGCTGTCATAGAACAGCAAAATTTGGTTCCTTTATACGGCAGGGGAAAGACTTCGACCGACCCGAGATCGAAAAGCATTCCTAGTCGTCCTATGGGGCAGAGACCGGAAGCAGCAGCTCCTCCCCCAGAACCAAACCCTTTTCATCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCCTCGACAAGGTTCGGTAATTTCACATTGTCTGCGGCGGTTGGTGGTCTCGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAAATCCAAGCATGTATGGCGCTGGAGTTGGTGCTGGTGCTCGTGCTGGTGCTAACTTTTCATATGGATTTCCGAACATGTTCTACGGTAGCCAAGGCCAGACCCATGGATACTATCACAATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAACAGCTGCTATTGTTTATTGGTTTCTGTGTTCTTCTTGTCGTAATCTGGCAATAGATGGAAGGGTACATAGGGCTTATATTGCTTCGTGTTGTTTAGTGTATTCAATCTCTAATATAAGAATGAAAAGAAAGAAATCTAATGGTACATTGTCTTGTTCTTTCATCATTCGTCCTCATTAGTCTTGCTGTATGTGTACAACTATTCTATGCTTAGGCATGGTGAACATCAGTTGACGTGCTTATGCAATTGTATTTGAAGGTTTCAGTTTATGTACACACATGTATATTCTATATACTGTATTGTCTCCAATTTTCCGGTTTCAAAAAGAAGAGTACTATGTGTTGCTGCTGTTCATGGTATTAACTTGGTTATTAAA

mRNA sequence

GCACGGCTTCTGGAACCTTCCATTTCCCCAAACTCATATTTTTGGATTTTCTGTTGAACGCCTTCGTGTCTTCCGTTTCAGATCCTCTTCTCAATCGATCGGCGGTTCCGTTCTTCTCAATCAAAGGTAAAGATATGGCGAGTGGATTTGGGGAATCGACGAGTAGGCAACCCCAAACCCCTTCCTGTTCCGACAACAATGGCGATGCTAGTAATTTTGAGTGCAATATTTGCCTCGATTTAGCTCAAGACCCTATTGTAACCCTATGCGGTCATCTTTTTTGCTGGCCCTGTCTTTATAAGTGGCTGCACATTCGTTCCCATCCCCATGAATGTCCAGTTTGTAAGGCTGTCATAGAACAGCAAAATTTGGTTCCTTTATACGGCAGGGGAAAGACTTCGACCGACCCGAGATCGAAAAGCATTCCTAGTCGTCCTATGGGGCAGAGACCGGAAGCAGCAGCTCCTCCCCCAGAACCAAACCCTTTTCATCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCCTCGACAAGGTTCGGTAATTTCACATTGTCTGCGGCGGTTGGTGGTCTCGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAAATCCAAGCATGTATGGCGCTGGAGTTGGTGCTGGTGCTCGTGCTGGTGCTAACTTTTCATATGGATTTCCGAACATGTTCTACGGTAGCCAAGGCCAGACCCATGGATACTATCACAATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAACAGCTGCTATTGTTTATTGGTTTCTGTGTTCTTCTTGTCGTAATCTGGCAATAGATGGAAGGGTACATAGGGCTTATATTGCTTCGTGTTGTTTAGTGTATTCAATCTCTAATATAAGAATGAAAAGAAAGAAATCTAATGGTACATTGTCTTGTTCTTTCATCATTCGTCCTCATTAGTCTTGCTGTATGTGTACAACTATTCTATGCTTAGGCATGGTGAACATCAGTTGACGTGCTTATGCAATTGTATTTGAAGGTTTCAGTTTATGTACACACATGTATATTCTATATACTGTATTGTCTCCAATTTTCCGGTTTCAAAAAGAAGAGTACTATGTGTTGCTGCTGTTCATGGTATTAACTTGGTTATTAAA

Coding sequence (CDS)

ATGGCGAGTGGATTTGGGGAATCGACGAGTAGGCAACCCCAAACCCCTTCCTGTTCCGACAACAATGGCGATGCTAGTAATTTTGAGTGCAATATTTGCCTCGATTTAGCTCAAGACCCTATTGTAACCCTATGCGGTCATCTTTTTTGCTGGCCCTGTCTTTATAAGTGGCTGCACATTCGTTCCCATCCCCATGAATGTCCAGTTTGTAAGGCTGTCATAGAACAGCAAAATTTGGTTCCTTTATACGGCAGGGGAAAGACTTCGACCGACCCGAGATCGAAAAGCATTCCTAGTCGTCCTATGGGGCAGAGACCGGAAGCAGCAGCTCCTCCCCCAGAACCAAACCCTTTTCATCACAATGGGTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCCTCGACAAGGTTCGGTAATTTCACATTGTCTGCGGCGGTTGGTGGTCTCGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAAATCCAAGCATGTATGGCGCTGGAGTTGGTGCTGGTGCTCGTGCTGGTGCTAACTTTTCATATGGATTTCCGAACATGTTCTACGGTAGCCAAGGCCAGACCCATGGATACTATCACAATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAACAGCTGCTATTGTTTATTGGTTTCTGTGTTCTTCTTGTCGTAATCTGGCAATAG

Protein sequence

MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIRSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSKSIPSRPMGQRPEAAAPPPEPNPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVGAGARAGANFSYGFPNMFYGSQGQTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVIWQ

Homology

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BLAST of Sed0010082 vs. NCBI nr
Match: XP_038884023.1 (E3 ubiquitin ligase rnf-5 [Benincasa hispida])

HSP 1 Score: 422.9 bits (1086), Expect = 1.7e-114
Identity = 204/238 (85.71%), Postives = 212/238 (89.08%), Query Frame = 0


Query: 1   MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60
           MASGFGESTSRQPQ+PSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  RSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSKS-----IPSRPMGQRPEAAAPPPEP 120
            SHP ECPVCKA+IE+Q LVPLYGRGKTSTDPRSKS     IP+RP GQRPEAA PPPEP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVG 180
           NPF HNGFGFMGGLGGFAPMASTRFGNFTLSAA GGLVPSLFNFQMHGYA+PSMYG    
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYG---- 180

Query: 181 AGARAGANFSYGFPNMFYGSQGQTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVIWQ 234
               AGANF YGFPNMF+GS G  HGYYH LRQGQQDYYLK+LLLFIGFCVLL +IWQ
Sbjct: 181 ----AGANFPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

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BLAST of Sed0010082 vs. NCBI nr
Match: XP_022951148.1 (RING finger protein 5 [Cucurbita moschata] >XP_023537562.1 RING finger protein 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 415.2 bits (1066), Expect = 3.6e-112
Identity = 203/242 (83.88%), Postives = 212/242 (87.60%), Query Frame = 0


Query: 1   MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60
           MASGFGESTSRQPQ+PSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  RSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSKS-----IPSRPMGQRPEAAAPPPEP 120
            SHP ECPVCKA+IE+Q LVPLYGRGKTSTDPRSKS     IP+RP GQRPEAA PPPEP
Sbjct: 61  HSHPQECPVCKAMIEEQKLVPLYGRGKTSTDPRSKSIPGVNIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVG 180
           NPF HNGFGFMGGLGGFAPMASTRFGNFTLSAA GGLVPSLFNFQMHGYA+PSMYG    
Sbjct: 121 NPFAHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYG---- 180

Query: 181 AGARAGANFSYGFPNMFYGSQG----QTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVI 234
               AGANF YGFPNMF+GS G      HGYYH+LRQGQQDYYLK+LL FIGFCVLL +I
Sbjct: 181 ----AGANFPYGFPNMFHGSHGHGHAHAHGYYHHLRQGQQDYYLKRLLFFIGFCVLLALI 234

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BLAST of Sed0010082 vs. NCBI nr
Match: KAG6598412.1 (E3 ubiquitin ligase rnf-5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 414.5 bits (1064), Expect = 6.2e-112
Identity = 202/238 (84.87%), Postives = 210/238 (88.24%), Query Frame = 0


Query: 1   MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60
           MASGFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 17  MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 76

Query: 61  RSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSKS-----IPSRPMGQRPEAAAPPPEP 120
            SHP ECPVCKA+IE+Q LVPLYGRGKTSTDPRSKS     IP+RP GQRPEAA PPPEP
Sbjct: 77  HSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 136

Query: 121 NPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVG 180
           NPF HNGFGFMGGLGGFAPMASTRFGNFTLSAA GGLVPSLFNFQMHGYA+PSMYG    
Sbjct: 137 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYG---- 196

Query: 181 AGARAGANFSYGFPNMFYGSQGQTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVIWQ 234
               AGAN  YGFPNMF+GS G  HGYYH+LRQGQQDYYLK+LLLFIGFCVLL +IWQ
Sbjct: 197 ----AGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 246

[Close]

BLAST of Sed0010082 vs. NCBI nr
Match: XP_023547002.1 (E3 ubiquitin-protein ligase RNF185-like [Cucurbita pepo subsp. pepo] >XP_023547003.1 E3 ubiquitin-protein ligase RNF185-like [Cucurbita pepo subsp. pepo] >KAG7029364.1 RING finger protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 414.5 bits (1064), Expect = 6.2e-112
Identity = 202/238 (84.87%), Postives = 210/238 (88.24%), Query Frame = 0


Query: 1   MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60
           MASGFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  RSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSKS-----IPSRPMGQRPEAAAPPPEP 120
            SHP ECPVCKA+IE+Q LVPLYGRGKTSTDPRSKS     IP+RP GQRPEAA PPPEP
Sbjct: 61  HSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVG 180
           NPF HNGFGFMGGLGGFAPMASTRFGNFTLSAA GGLVPSLFNFQMHGYA+PSMYG    
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYG---- 180

Query: 181 AGARAGANFSYGFPNMFYGSQGQTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVIWQ 234
               AGAN  YGFPNMF+GS G  HGYYH+LRQGQQDYYLK+LLLFIGFCVLL +IWQ
Sbjct: 181 ----AGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

[Close]

BLAST of Sed0010082 vs. NCBI nr
Match: XP_022962412.1 (E3 ubiquitin-protein ligase RNF185-like [Cucurbita moschata] >XP_022962413.1 E3 ubiquitin-protein ligase RNF185-like [Cucurbita moschata])

HSP 1 Score: 414.5 bits (1064), Expect = 6.2e-112
Identity = 202/238 (84.87%), Postives = 210/238 (88.24%), Query Frame = 0


Query: 1   MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60
           MASGFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  RSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSKS-----IPSRPMGQRPEAAAPPPEP 120
            SHP ECPVCKA+IE+Q LVPLYGRGKTSTDPRSKS     IP+RP GQRPEAA PPPEP
Sbjct: 61  HSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPSGQRPEAAGPPPEP 120

Query: 121 NPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVG 180
           NPF HNGFGFMGGLGGFAPMASTRFGNFTLSAA GGLVPSLFNFQMHGYA+PSMYG    
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYG---- 180

Query: 181 AGARAGANFSYGFPNMFYGSQGQTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVIWQ 234
               AGAN  YGFPNMF+GS G  HGYYH+LRQGQQDYYLK+LLLFIGFCVLL +IWQ
Sbjct: 181 ----AGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

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BLAST of Sed0010082 vs. ExPASy Swiss-Prot
Match: Q09463 (E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-30
Identity = 94/242 (38.84%), Postives = 125/242 (51.65%), Query Frame = 0


Query: 9   TSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIRSHPHECP 68
           T    + P+ S N  +++ FECNICLD A+D +V+LCGHLFCWPCL +WL  R +   CP
Sbjct: 5   TKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCP 64

Query: 69  VCKAVIEQQNLVPLYGRGKTSTDPRSKSIPSRPMGQRPEAAAPPPEP-NPFHHNGFGFMG 128
           VCK+ I+   +VP+YGRG  S+DPR K +P RP GQR E   PPP+    F+  G G  G
Sbjct: 65  VCKSAIDGNKVVPIYGRGGDSSDPR-KKVPPRPKGQRSE---PPPQSFAGFNWGGDG--G 124

Query: 129 GLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANP-----SMYGAG-VGAGARAG 188
            +GG  P     FG  T    V GL P +F         P     S +G G  GA A  G
Sbjct: 125 MMGGGGPNVHFSFGIGT----VNGLFPLMFMLPFIQGIFPLSFVASFFGNGNQGAAAAGG 184

Query: 189 ANFSYGFPNMFYGSQGQTHGYYH-----------NLRQGQQDYYLKQLLLFIGFCVLLVV 233
            N      N   G+   THG+ H             R  Q++ YL  +  +IGF +L  +
Sbjct: 185 GNGGGNDGN--DGTHAHTHGHTHGPRGHGESAAPGSRMAQEEEYLSNIFKYIGFFMLFWL 234

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BLAST of Sed0010082 vs. ExPASy Swiss-Prot
Match: Q5ZIR9 (E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.4e-27
Identity = 70/151 (46.36%), Postives = 87/151 (57.62%), Query Frame = 0


Query: 9   TSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIRSHPHECP 68
           TS    +    DN    + FECNICLD A+D +++LCGHLFCWPCL++WL  R +   CP
Sbjct: 20  TSGSSSSNGAGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCP 79

Query: 69  VCKAVIEQQNLVPLYGRGKT-STDPRSKSIPSRPMGQRPEAAAPPPEPNPFHHNGFGFMG 128
           VCKA I +  ++PLYGRG T   DPR K+ P RP GQRPE     PE N     GFGF  
Sbjct: 80  VCKAGISRDKVIPLYGRGSTGQQDPREKT-PPRPQGQRPE-----PE-NRGGFQGFGF-- 139

Query: 129 GLGGFAPMASTRFGNFTLSAAVGGLVPSLFN 159
           G GGF         +F + A   G+  + FN
Sbjct: 140 GDGGFQM-------SFGIGAFPFGIFATAFN 154

[Close]

BLAST of Sed0010082 vs. ExPASy Swiss-Prot
Match: Q96GF1 (E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-26
Identity = 76/164 (46.34%), Postives = 92/164 (56.10%), Query Frame = 0


Query: 6   GESTSRQPQT-----PSCSDN-----NGDASNFECNICLDLAQDPIVTLCGHLFCWPCLY 65
           G S S  P+      PS S N      G  S FECNICLD A+D +++LCGHLFCWPCL+
Sbjct: 5   GPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLH 64

Query: 66  KWLHIRSHPHECPVCKAVIEQQNLVPLYGRGKT-STDPRSKSIPSRPMGQRPEAAAPPPE 125
           +WL  R +   CPVCKA I +  ++PLYGRG T   DPR K+ P RP GQRPE     PE
Sbjct: 65  QWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT-PPRPQGQRPE-----PE 124

Query: 126 PNPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFN 159
            N     GFGF  G GGF         +F + A   G+  + FN
Sbjct: 125 -NRGGFQGFGF--GDGGFQM-------SFGIGAFPFGIFATAFN 152

[Close]

BLAST of Sed0010082 vs. ExPASy Swiss-Prot
Match: Q91YT2 (E3 ubiquitin-protein ligase RNF185 OS=Mus musculus OX=10090 GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-26
Identity = 68/140 (48.57%), Postives = 85/140 (60.71%), Query Frame = 0


Query: 20  DNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIRSHPHECPVCKAVIEQQNL 79
           ++ G  S FECNICLD A+D +++LCGHLFCWPCL++WL  R +   CPVCKA I +  +
Sbjct: 29  ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKV 88

Query: 80  VPLYGRGKT-STDPRSKSIPSRPMGQRPEAAAPPPEPNPFHHNGFGFMGGLGGFAPMAST 139
           +PLYGRG T   DPR K+ P RP GQRPE     PE N     GFGF  G GGF      
Sbjct: 89  IPLYGRGSTGQQDPREKT-PPRPQGQRPE-----PE-NRGGFQGFGF--GDGGFQM---- 148

Query: 140 RFGNFTLSAAVGGLVPSLFN 159
              +F + A   G+  + FN
Sbjct: 149 ---SFGIGAFPFGIFATAFN 152

[Close]

BLAST of Sed0010082 vs. ExPASy Swiss-Prot
Match: Q5RFK9 (E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii OX=9601 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-26
Identity = 76/164 (46.34%), Postives = 92/164 (56.10%), Query Frame = 0


Query: 6   GESTSRQPQT-----PSCSDN-----NGDASNFECNICLDLAQDPIVTLCGHLFCWPCLY 65
           G S S  P+      PS S N      G  S FECNICLD A+D +++LCGHLFCWPCL+
Sbjct: 5   GPSASSSPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLH 64

Query: 66  KWLHIRSHPHECPVCKAVIEQQNLVPLYGRGKT-STDPRSKSIPSRPMGQRPEAAAPPPE 125
           +WL  R +   CPVCKA I +  ++PLYGRG T   DPR K+ P RP GQRPE     PE
Sbjct: 65  QWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT-PPRPQGQRPE-----PE 124

Query: 126 PNPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFN 159
            N     GFGF  G GGF         +F + A   G+  + FN
Sbjct: 125 -NRGGFQGFGF--GDGGFQM-------SFGIGAFPFGIFATAFN 152

[Close]

BLAST of Sed0010082 vs. ExPASy TrEMBL
Match: A0A6J1GGW7 (RING finger protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111454080 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.8e-112
Identity = 203/242 (83.88%), Postives = 212/242 (87.60%), Query Frame = 0


Query: 1   MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60
           MASGFGESTSRQPQ+PSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  RSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSKS-----IPSRPMGQRPEAAAPPPEP 120
            SHP ECPVCKA+IE+Q LVPLYGRGKTSTDPRSKS     IP+RP GQRPEAA PPPEP
Sbjct: 61  HSHPQECPVCKAMIEEQKLVPLYGRGKTSTDPRSKSIPGVNIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVG 180
           NPF HNGFGFMGGLGGFAPMASTRFGNFTLSAA GGLVPSLFNFQMHGYA+PSMYG    
Sbjct: 121 NPFAHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYG---- 180

Query: 181 AGARAGANFSYGFPNMFYGSQG----QTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVI 234
               AGANF YGFPNMF+GS G      HGYYH+LRQGQQDYYLK+LL FIGFCVLL +I
Sbjct: 181 ----AGANFPYGFPNMFHGSHGHGHAHAHGYYHHLRQGQQDYYLKRLLFFIGFCVLLALI 234

[Close]

BLAST of Sed0010082 vs. ExPASy TrEMBL
Match: A0A6J1HCN0 (E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita moschata OX=3662 GN=LOC111462860 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 3.0e-112
Identity = 202/238 (84.87%), Postives = 210/238 (88.24%), Query Frame = 0


Query: 1   MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60
           MASGFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  RSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSKS-----IPSRPMGQRPEAAAPPPEP 120
            SHP ECPVCKA+IE+Q LVPLYGRGKTSTDPRSKS     IP+RP GQRPEAA PPPEP
Sbjct: 61  HSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPSGQRPEAAGPPPEP 120

Query: 121 NPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVG 180
           NPF HNGFGFMGGLGGFAPMASTRFGNFTLSAA GGLVPSLFNFQMHGYA+PSMYG    
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYG---- 180

Query: 181 AGARAGANFSYGFPNMFYGSQGQTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVIWQ 234
               AGAN  YGFPNMF+GS G  HGYYH+LRQGQQDYYLK+LLLFIGFCVLL +IWQ
Sbjct: 181 ----AGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

[Close]

BLAST of Sed0010082 vs. ExPASy TrEMBL
Match: A0A1S3BBQ8 (RING finger protein 5 OS=Cucumis melo OX=3656 GN=LOC103487942 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 8.8e-112
Identity = 200/238 (84.03%), Postives = 209/238 (87.82%), Query Frame = 0


Query: 1   MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60
           MASG GESTSRQPQ+PSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGLGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  RSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSK-----SIPSRPMGQRPEAAAPPPEP 120
            SHP ECPVCKA+IE+Q LVPLYGRGKTSTDPRSK     +IP+RP GQRPEAA PPPEP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKGIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVG 180
           NPF HNGFGFMGGLGGFAPMASTRFGNFTLSAA GGLVPSLFNFQMHGYA+PSMYG    
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYG---- 180

Query: 181 AGARAGANFSYGFPNMFYGSQGQTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVIWQ 234
               AGANF YGFPNMF+GS G  HGYYH LRQGQQDYYLK+LLL IGF VLL +IWQ
Sbjct: 181 ----AGANFPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLLIGFFVLLALIWQ 230

[Close]

BLAST of Sed0010082 vs. ExPASy TrEMBL
Match: A0A5A7VHN4 (RING finger protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006030 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 8.8e-112
Identity = 200/238 (84.03%), Postives = 209/238 (87.82%), Query Frame = 0


Query: 1   MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60
           MASG GESTSRQPQ+PSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGLGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  RSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSK-----SIPSRPMGQRPEAAAPPPEP 120
            SHP ECPVCKA+IE+Q LVPLYGRGKTSTDPRSK     +IP+RP GQRPEAA PPPEP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKGIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVG 180
           NPF HNGFGFMGGLGGFAPMASTRFGNFTLSAA GGLVPSLFNFQMHGYA+PSMYG    
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYG---- 180

Query: 181 AGARAGANFSYGFPNMFYGSQGQTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVIWQ 234
               AGANF YGFPNMF+GS G  HGYYH LRQGQQDYYLK+LLL IGF VLL +IWQ
Sbjct: 181 ----AGANFPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLLIGFFVLLALIWQ 230

[Close]

BLAST of Sed0010082 vs. ExPASy TrEMBL
Match: A0A0A0LLD2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G360850 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 8.8e-112
Identity = 200/238 (84.03%), Postives = 208/238 (87.39%), Query Frame = 0


Query: 1   MASGFGESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60
           M SGFGESTSRQPQ+PSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MESGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 61  RSHPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSKS-----IPSRPMGQRPEAAAPPPEP 120
            SHP ECPVCKA+IE+Q LVPLYGRGKTSTDPRSKS     IP+RP GQRPEAA PPPEP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 121 NPFHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVG 180
           NPF HNGFGFMGGLGGFAPMASTRFGNFTLSAA GGLVPSLFNFQMHGYA+PSMYG    
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYG---- 180

Query: 181 AGARAGANFSYGFPNMFYGSQGQTHGYYHNLRQGQQDYYLKQLLLFIGFCVLLVVIWQ 234
               AGANF YGFPNMF+GS G  HGYYH LRQGQQDYYLK+LL  IGF VLL +IWQ
Sbjct: 181 ----AGANFPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLFLIGFFVLLALIWQ 230

[Close]

BLAST of Sed0010082 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 258.1 bits (658), Expect = 6.9e-69
Identity = 137/219 (62.56%), Postives = 156/219 (71.23%), Query Frame = 0


Query: 16  PSCSD----NNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIRSHPHECPVCK 75
           PSCS     NN D+SNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLH+ S   +CPVCK
Sbjct: 5   PSCSSGNDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCK 64

Query: 76  AVIEQQNLVPLYGRGKTSTDPRSKSI-----PSRPMGQRPEAAAPPPEPNPF-HHNGFGF 135
           AVIE+  LVPLYGRGK+S DPRSKSI     P+RP GQRPE A PP   + F HH+GFG 
Sbjct: 65  AVIEEDRLVPLYGRGKSSADPRSKSIPGLEVPNRPSGQRPETAQPPDPNHGFAHHHGFG- 124

Query: 136 MGGLGGF-APMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVGAGARAGANF 195
            G +GGF APMAS RFGN TLSAA GGL+PSLFN   HG+ + +MYGA    G      F
Sbjct: 125 -GFMGGFAAPMASARFGNVTLSAAFGGLIPSLFNLHFHGFPDAAMYGAAASGG------F 184

Query: 196 SYGFPNMFYGSQGQTHGYY-HNLRQGQQDYYLKQLLLFI 223
            +GF N F+G     H Y  H  RQGQQD++L+ LLL +
Sbjct: 185 PHGFSNPFHGGHSHMHSYQRHTGRQGQQDHHLRILLLIV 215

[Close]

BLAST of Sed0010082 vs. TAIR 10
Match: AT2G23780.1 (RING/U-box superfamily protein )

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-58
Identity = 123/238 (51.68%), Postives = 154/238 (64.71%), Query Frame = 0


Query: 6   GESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIRSHPH 65
           GES++    + S +D N    +FECNIC +LAQDPIVTLCGHLFCWPCLY+WLH  SH  
Sbjct: 4   GESSTSTSYSDSNNDTNDQGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQ 63

Query: 66  ECPVCKAVIEQQNLVPLYGRGKTSTDPRSK-----SIPSRPMGQRPEAAAPPPEP---NP 125
           ECPVCKAV++   LVPLYGRGK  TDPRSK      IP+RP GQRPE AAPPP+P   + 
Sbjct: 64  ECPVCKAVVQDDKLVPLYGRGKNQTDPRSKRYPGLRIPNRPTGQRPETAAPPPQPEAASN 123

Query: 126 FHHNGFGFMGGLGGFAPMASTRFGNFTLSAAVGGLVPSLFNFQMHGYANPSMYGAGVGAG 185
           F + G G MGG+     MA+TRFGNF  S   GGL+PSLFNFQ HG+ + ++YG+  G  
Sbjct: 124 FFNYGIGLMGGI--MPMMATTRFGNF--SMGFGGLLPSLFNFQFHGFHDATLYGSTPG-- 183

Query: 186 ARAGANFSY-GFPNMFYGSQGQTHGYYHNLRQG--QQDYYLKQLLLFIGFCVLLVVIW 233
                 + Y G+ N F G      G    + +G  Q D +LK +L F+G CV++ +IW
Sbjct: 184 ------YPYGGYHNGFRGV--PPRGQERPMARGGNQSDAFLKNILFFVGICVVIFLIW 227

[Close]

BLAST of Sed0010082 vs. TAIR 10
Match: AT1G74990.1 (RING/U-box superfamily protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-34
Identity = 71/133 (53.38%), Postives = 89/133 (66.92%), Query Frame = 0


Query: 19  SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIRSHPHECPVCKAVIEQQN 78
           ++ +  ++NF CNICL+LA++PIVTLCGHLFCWPCLYKWLH  S  + CPVCKA++++  
Sbjct: 8   NEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVKEDT 67

Query: 79  LVPLYGRGKTSTDPRSK-----SIPSRPMGQRPEAAAPPPEPNPFHHNGFGFMGGLGGFA 138
           LVPLYG GK S+DPRSK     ++P+RP   R E A P  E     H+G  F GG   FA
Sbjct: 68  LVPLYGMGKPSSDPRSKLNSGVTVPNRPAATRTETARPRLEQ---RHHGSSFFGGHSSFA 127

Query: 139 PM-ASTRFGNFTL 146
            M    RF NF L
Sbjct: 128 AMPTGLRFSNFLL 137

[Close]

BLAST of Sed0010082 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 115.2 bits (287), Expect = 7.3e-26
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 7   ESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIRS---- 66
           +S   +P T S   ++ D SNF+CNICLD  Q+P+VTLCGHLFCWPC++KWL ++S    
Sbjct: 25  KSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTS 84

Query: 67  ----HPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSK-SIPSRPMG 104
                  +CPVCK+ +    LVPLYGRG+ +T    K S+P RP+G
Sbjct: 85  DEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKNSVPKRPVG 130

[Close]

BLAST of Sed0010082 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 115.2 bits (287), Expect = 7.3e-26
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 7   ESTSRQPQTPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIRS---- 66
           +S   +P T S   ++ D SNF+CNICLD  Q+P+VTLCGHLFCWPC++KWL ++S    
Sbjct: 25  KSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTS 84

Query: 67  ----HPHECPVCKAVIEQQNLVPLYGRGKTSTDPRSK-SIPSRPMG 104
                  +CPVCK+ +    LVPLYGRG+ +T    K S+P RP+G
Sbjct: 85  DEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKNSVPKRPVG 130

The following BLAST results are available for this feature:

BLAST of Sed0010082 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884023.1	1.7e-114	85.71	E3 ubiquitin ligase rnf-5 [Benincasa hispida]	[more]
XP_022951148.1	3.6e-112	83.88	RING finger protein 5 [Cucurbita moschata] >XP_023537562.1 RING finger protein 5...	[more]
KAG6598412.1	6.2e-112	84.87	E3 ubiquitin ligase rnf-5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023547002.1	6.2e-112	84.87	E3 ubiquitin-protein ligase RNF185-like [Cucurbita pepo subsp. pepo] >XP_0235470...	[more]
XP_022962412.1	6.2e-112	84.87	E3 ubiquitin-protein ligase RNF185-like [Cucurbita moschata] >XP_022962413.1 E3 ...	[more]

BLAST of Sed0010082 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09463	1.2e-30	38.84	E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1	[more]
Q5ZIR9	8.4e-27	46.36	E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1	[more]
Q96GF1	1.9e-26	46.34	E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1	[more]
Q91YT2	1.9e-26	48.57	E3 ubiquitin-protein ligase RNF185 OS=Mus musculus OX=10090 GN=Rnf185 PE=2 SV=1	[more]
Q5RFK9	1.9e-26	46.34	E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii OX=9601 GN=RNF185 PE=2 SV=1	[more]

BLAST of Sed0010082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGW7	1.8e-112	83.88	RING finger protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111454080 PE=4 SV=1	[more]
A0A6J1HCN0	3.0e-112	84.87	E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A1S3BBQ8	8.8e-112	84.03	RING finger protein 5 OS=Cucumis melo OX=3656 GN=LOC103487942 PE=4 SV=1	[more]
A0A5A7VHN4	8.8e-112	84.03	RING finger protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A0A0LLD2	8.8e-112	84.03	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G360850 P...	[more]

BLAST of Sed0010082 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19310.1	6.9e-69	62.56	RING/U-box superfamily protein	[more]
AT2G23780.1	1.5e-58	51.68	RING/U-box superfamily protein	[more]
AT1G74990.1	1.9e-34	53.38	RING/U-box superfamily protein	[more]
AT4G03510.1	7.3e-26	49.06	RING membrane-anchor 1	[more]
AT4G03510.2	7.3e-26	49.06	RING membrane-anchor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 30..70 e-value: 6.2E-8 score: 42.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 30..71 score: 13.212175
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 28..76 e-value: 1.6E-8 score: 34.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..116
None	No IPR available	PANTHER	PTHR12313:SF39	OS12G0636000 PROTEIN	coord: 2..233
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 28..72 e-value: 1.86872E-28 score: 100.071
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 26..83
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 9..84 e-value: 1.5E-17 score: 64.7
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 2..233
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 45..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010082.1	Sed0010082.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity