Sed0010056 (gene) Chayote v1

Overview


Name	Sed0010056
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CLAVATA3/ESR (CLE)-related protein 25-like
Location	LG04: 5271860 .. 5273964 (-)
RNA-Seq Expression	Sed0010056
Synteny	Sed0010056

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAGTGCAACAGAATCCACCAACTCTATAAAGAGAAAAAGGATAACTCTCTAATCAAACATGCAGCCCCTACCAAAACCAAAAAAAAAAAAACTCTTCTTCCTCTCCTTCACTAATCTCATACTTCTTCTCTTCATTACTTGATGTTAACTAAGACAACACGACACACCGATAGCCGTTATATATCCTTCCCTTTCGAGTCGTAAAAACGACTAAATCTCCCTCGACATACACAGACGGAAGTGTGTGTGTATATATATAGAGTAGATAACTGCATATATATTTATGAGAAGTGAAGGTGGCTGTTGCTGGTTTTCTTACTTGAAGGTCTTGCTTGGAGCTGTGGGTGTAGGGGTGGTTCTATGGCTTTTAATCGTCGGCTCGGTGGAGAGTGGAGAACGGCGTGTGGCCAAAACATTCGGTCGAGCGGAAGCTGAGTCCGTGGTTGGAGGAAGCCATGTGAAGCAAGCCAAGGTACTGCCTAACAACAACCATCCAGAGTTGGATCCTAACTTTATGAGCAAAGTTAAAGTTCCCAAGGGACCAGACCCCATTCATAACAGGTGTGTTTTTTTCTCAAAACCAAGTATATTGATATGTTGTGTTCCAAATTATGTTAGATATCTTTTTTTTTTTTTTTTTTTTTAGAATTAATAATTACTTGCTCAATTTTGTATTAAATTTCAAGGCCCGTGGATAAATTAAGAAGATTATTACGATTATTGATATAAGATTAAATCGCTATAAAGTTGGCTGTTCATGACTTGTATATGTATATTATTTGAAAGCGATTAATTATATATATATATATATATATATATTAAATCTTAGGTATTAGGCCTGCTTTAGAATTAAGCATGAAATATAAAAGTGTTCTCTTAAAAAAAATAGTGTTCTGTTTTGTTCAAATTTTAAAGTGTACTTTTGACCAATTAAAAATACTTTTCAGAATTTTCTTTGACAAAGTGATTGAACCTGACTTATTTAGTCCGTTTGATTTATGGAATTTTAGTATTATTATTATTATTCTATCATATTTTTTTGTCTGTAGTGGCTTTCATATTTTTGTAAAAAAAATAAACATTATTTTCTTACCAAAATTAAAGTTAAACACAAATTTTCAAAAAATATTGTTTTTTTTTTCTTTGGTTAATCTTTAAAACCCGATTTAGTTTTTTAAAACATTAATAATTTTAAAAAGGGAGATGACAAAATTTACAAAAGAAATAATTTATAAAAGTGTTTATAAATAAGTTTAGTTTTGGGGATTTTACATTTATAGCAAAAAGTAAAAAATAATATATCATTAATAACACTTTTTTATAAATAGTTATGTATATAGTAGAAAATTGGTCAAGTCCGTGGAAAATAACTAAAATGCATAAGTTTCTTCAATAAATAGCTTTTTTTTTTTTAAACACCTTTTTAATAAATTCATTGATAGTCTTAATCAATTTGATGATAACCTTCAATTAATTTACTTAGCAGAATCAAATTGAAAAATATAAAAATTTCTACCAGAATATGTTGTACATGTAATATTTTTTTAAAAAATTACTATAATTATAAATGAAGAAAAAAATTGCCATATGTAGCAATTTTTCTTTAATTTTCACCAAAAGAAAATAAAAAATAAAAAGCTATATGATTATGAAATGAAATCTTAAAAATTTCATAACGGAATGGTTTTCAGTAGATATATTAAAGTTTCTATGGTATTGATTAAAATACTAATATTATTATTTATTATGTTGCAAGAGGTATACTTTTTTAATATGTTTGTATTAATGATTTCAAAAATATATATATATATATGTTTGTATTAATTGATGAGTTTTATTTTCAGGAGAATTGGGGTTAAAGGAGGGCCTCCCGGTCGAGCTTAGGCTTAAGGTTGTAGAGTTTCAGTTCAGATCAGGAATCATGCCACGTGTTCTTCTCAACCTTATCTCTCTTTTAATCTTTTCTTTACTTAAAATAAACAATCCCTTTTGTTTGTATTCTAATTTCAATAATCCAAAATGCTTCTTAAAAAAATATCTTACAATTCTTCATAATATGCTTCTAAACAAACTCGGCCCAATTATAATTCCTATCGGACTA

mRNA sequence

AGAAAAGTGCAACAGAATCCACCAACTCTATAAAGAGAAAAAGGATAACTCTCTAATCAAACATGCAGCCCCTACCAAAACCAAAAAAAAAAAAACTCTTCTTCCTCTCCTTCACTAATCTCATACTTCTTCTCTTCATTACTTGATGTTAACTAAGACAACACGACACACCGATAGCCGTTATATATCCTTCCCTTTCGAGTCGTAAAAACGACTAAATCTCCCTCGACATACACAGACGGAAGTGTGTGTGTATATATATAGAGTAGATAACTGCATATATATTTATGAGAAGTGAAGGTGGCTGTTGCTGGTTTTCTTACTTGAAGGTCTTGCTTGGAGCTGTGGGTGTAGGGGTGGTTCTATGGCTTTTAATCGTCGGCTCGGTGGAGAGTGGAGAACGGCGTGTGGCCAAAACATTCGGTCGAGCGGAAGCTGAGTCCGTGGTTGGAGGAAGCCATGTGAAGCAAGCCAAGGTACTGCCTAACAACAACCATCCAGAGTTGGATCCTAACTTTATGAGCAAAGTTAAAGTTCCCAAGGGACCAGACCCCATTCATAACAGGAGAATTGGGGTTAAAGGAGGGCCTCCCGGTCGAGCTTAGGCTTAAGGTTGTAGAGTTTCAGTTCAGATCAGGAATCATGCCACGTGTTCTTCTCAACCTTATCTCTCTTTTAATCTTTTCTTTACTTAAAATAAACAATCCCTTTTGTTTGTATTCTAATTTCAATAATCCAAAATGCTTCTTAAAAAAATATCTTACAATTCTTCATAATATGCTTCTAAACAAACTCGGCCCAATTATAATTCCTATCGGACTA

Coding sequence (CDS)

ATGAGAAGTGAAGGTGGCTGTTGCTGGTTTTCTTACTTGAAGGTCTTGCTTGGAGCTGTGGGTGTAGGGGTGGTTCTATGGCTTTTAATCGTCGGCTCGGTGGAGAGTGGAGAACGGCGTGTGGCCAAAACATTCGGTCGAGCGGAAGCTGAGTCCGTGGTTGGAGGAAGCCATGTGAAGCAAGCCAAGGTACTGCCTAACAACAACCATCCAGAGTTGGATCCTAACTTTATGAGCAAAGTTAAAGTTCCCAAGGGACCAGACCCCATTCATAACAGGAGAATTGGGGTTAAAGGAGGGCCTCCCGGTCGAGCTTAG

Protein sequence

MRSEGGCCWFSYLKVLLGAVGVGVVLWLLIVGSVESGERRVAKTFGRAEAESVVGGSHVKQAKVLPNNNHPELDPNFMSKVKVPKGPDPIHNRRIGVKGGPPGRA

Homology

[Close]

BLAST of Sed0010056 vs. NCBI nr
Match: XP_038891924.1 (uncharacterized protein LOC120081268 [Benincasa hispida])

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-28
Identity = 74/103 (71.84%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 1   MRSEGGCCWFSYLKVLLGAVGVGVVLWLLIVGSVESGERRVAKTFGRAEAESVVGGSHV- 60
           MRS   C +FSYLKVLLGAV VG+ +WLLIVGS+  G      T  R  AES V GSHV 
Sbjct: 1   MRSVDSCSYFSYLKVLLGAVVVGLFVWLLIVGSLPPGR----TTSRRPAAESEVEGSHVM 60

Query: 61  KQAKVLPNNNHPELDPNFMSKVKVPKGPDPIHNRRIGVKGGPP 103
           KQA+ L NNNHP+LDPNFMSKVKVPKGPDPIHNRRIGVKGGPP
Sbjct: 61  KQAEELANNNHPKLDPNFMSKVKVPKGPDPIHNRRIGVKGGPP 99

[Close]

BLAST of Sed0010056 vs. NCBI nr
Match: XP_022151235.1 (uncharacterized protein LOC111019209 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 68/105 (64.76%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 1   MRSEGGCCWFSYLKVLLGAVGVGVVLWLLIVGSVESGERRVAKTFGRAEAESVVGGSHVK 60
           MRSEG  C FSYLK LL A+ VG+ LW+L+VG  ES ER   +T     A     GSHVK
Sbjct: 1   MRSEGNLCLFSYLKFLLQALVVGLFLWILMVGLPESRERPAVETTNGLLA---TVGSHVK 60

Query: 61  QAKVLPNNNHPELDPNFMSKVKVPKGPDPIHNRRIGVKGGPPGRA 106
           Q KVLPNNNH +LD NFMSKV+VPKGPDPIHNRR+G+ GGPP RA
Sbjct: 61  QVKVLPNNNHQDLDLNFMSKVRVPKGPDPIHNRRVGINGGPPSRA 102

[Close]

BLAST of Sed0010056 vs. NCBI nr
Match: KAG7030819.1 (hypothetical protein SDJN02_04856, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 6.4e-24
Identity = 66/102 (64.71%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 1   MRSEGGCCWFSYLKVLLGAVGVGVVLWLLIVGSVESGERRVAKTFGRAEAESVVGGSHVK 60
           MR EG CC FSY KVLLGAV VG+ +WLLIVG  +SGER +AKT     A S   GSH+K
Sbjct: 1   MRREGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARSEFEGSHMK 60

Query: 61  QAKVLPNNNHPELDPNFMSKVKVPKGPDPIHNRRIGVKGGPP 103
           QAK L          NFMSKVKVPKGPDPIHNRR GVKG PP
Sbjct: 61  QAKEL----------NFMSKVKVPKGPDPIHNRRTGVKGRPP 92

[Close]

BLAST of Sed0010056 vs. NCBI nr
Match: XP_011655655.1 (uncharacterized protein LOC105435565 [Cucumis sativus] >KGN51858.1 hypothetical protein Csa_008237 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-22
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 1   MRSEGGCCWFSYLKVLLGAVGVGVVLWLLIVGSVESGERRVAKTFGRAEAESVVGGSH-V 60
           M+S   CC+FSYLKVLLGAV VG+ +WLL+VGS      R       AE+   V G H +
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60

Query: 61  KQAK-VLPNNNHPE-LDPNFMSKVKVPKGPDPIHNRRIGVKGGPP 103
           K+A+  L  NNHP+ LDPNFMSKV+VPKGPDPIHNRRIGVKGGPP
Sbjct: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105

[Close]

BLAST of Sed0010056 vs. NCBI nr
Match: XP_042978760.1 (uncharacterized protein LOC122309350 [Carya illinoinensis] >KAG6654407.1 hypothetical protein CIPAW_05G143500 [Carya illinoinensis] >KAG6713211.1 hypothetical protein I3842_05G141000 [Carya illinoinensis] >KAG7979448.1 hypothetical protein I3843_05G132300 [Carya illinoinensis])

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-09
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 11  SYLKVLLGAVGVGVVLWLLIVGSVESGER-RVAKTFGRAEAESVVGGSHVKQAKVLPNNN 70
           S+LKVL GA+ + VV++L  V S + G R  +A T       S  G +    A V+   N
Sbjct: 13  SHLKVLFGALALVVVIFLFTVSSQQQGGRTEIAPTLA-----SDSGRNPKLHAYVMGRGN 72

Query: 71  ---HPELDPNFMSKVKVPKGPDPIHNRRIGVKGGPPGRA 106
              HPEL+ N+MSK +VP GPDPIHNRR G  G PPGRA
Sbjct: 73  FVDHPELNLNYMSKRRVPNGPDPIHNRRTGNSGRPPGRA 106

[Close]

BLAST of Sed0010056 vs. ExPASy TrEMBL
Match: A0A6J1DAM7 (uncharacterized protein LOC111019209 OS=Momordica charantia OX=3673 GN=LOC111019209 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.7e-27
Identity = 68/105 (64.76%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 1   MRSEGGCCWFSYLKVLLGAVGVGVVLWLLIVGSVESGERRVAKTFGRAEAESVVGGSHVK 60
           MRSEG  C FSYLK LL A+ VG+ LW+L+VG  ES ER   +T     A     GSHVK
Sbjct: 1   MRSEGNLCLFSYLKFLLQALVVGLFLWILMVGLPESRERPAVETTNGLLA---TVGSHVK 60

Query: 61  QAKVLPNNNHPELDPNFMSKVKVPKGPDPIHNRRIGVKGGPPGRA 106
           Q KVLPNNNH +LD NFMSKV+VPKGPDPIHNRR+G+ GGPP RA
Sbjct: 61  QVKVLPNNNHQDLDLNFMSKVRVPKGPDPIHNRRVGINGGPPSRA 102

[Close]

BLAST of Sed0010056 vs. ExPASy TrEMBL
Match: A0A0A0KQF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604030 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 1   MRSEGGCCWFSYLKVLLGAVGVGVVLWLLIVGSVESGERRVAKTFGRAEAESVVGGSH-V 60
           M+S   CC+FSYLKVLLGAV VG+ +WLL+VGS      R       AE+   V G H +
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60

Query: 61  KQAK-VLPNNNHPE-LDPNFMSKVKVPKGPDPIHNRRIGVKGGPP 103
           K+A+  L  NNHP+ LDPNFMSKV+VPKGPDPIHNRRIGVKGGPP
Sbjct: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105

[Close]

BLAST of Sed0010056 vs. ExPASy TrEMBL
Match: A0A067H4U1 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034371mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-09
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 14  KVLLGAVGVGVVLWLLIVGSVESGERRVAKTFGRAEAESVVGGSHVKQAKVLPNN---NH 73
           K L GA+ VG ++ LL++G++ESG          +   +    +++K+A+ L      +H
Sbjct: 8   KALFGALAVGWLICLLLIGNLESGGN------STSTLTTTQSTANLKRAEALGREKFIDH 67

Query: 74  PELDPNFMSKVKVPKGPDPIHNRRIGVKGGPPGRA 106
           PELD N+MSK +VP GPDPIHNRR G  G PPG++
Sbjct: 68  PELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQS 96

[Close]

BLAST of Sed0010056 vs. ExPASy TrEMBL
Match: V4VGV5 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033175mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-09
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 14  KVLLGAVGVGVVLWLLIVGSVESGERRVAKTFGRAEAESVVGGSHVKQAKVLPNN---NH 73
           K L GA+ VG ++ LL++G++ESG          +   +    +++K+A+ L      +H
Sbjct: 8   KALFGALAVGWLICLLLIGNLESGGN------STSTLTTTQSTANLKRAEALGREKFIDH 67

Query: 74  PELDPNFMSKVKVPKGPDPIHNRRIGVKGGPPGRA 106
           PELD N+MSK +VP GPDPIHNRR G  G PPG++
Sbjct: 68  PELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQS 96

[Close]

BLAST of Sed0010056 vs. ExPASy TrEMBL
Match: A0A2H5N8H6 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_022560 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 0


Query: 14  KVLLGAVGVGVVLWLLIVGSVESGERRVAKTFGRAEAESVVGGSHVKQAKVLPNN---NH 73
           K L G + VG ++ LL++G++ESG          +   +    +++K+A+ L      +H
Sbjct: 8   KALFGVLAVGWLICLLLIGNLESGGN------STSTLTTTQSTANLKRAEALGREKFIDH 67

Query: 74  PELDPNFMSKVKVPKGPDPIHNRRIGVKGGPPGRA 106
           PELD N+MSK +VP GPDPIHNRR G  G PPG++
Sbjct: 68  PELDLNYMSKRRVPNGPDPIHNRRAGNSGRPPGQS 96

[Close]

BLAST of Sed0010056 vs. TAIR 10
Match: AT1G69970.2 (CLAVATA3/ESR-RELATED 26 )

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 31/84 (36.90%), Postives = 41/84 (48.81%), Query Frame = 0


Query: 22  VGVVLWLLIVGSVESGERRVAKTFGRAEAESVVGGSHVKQAKVLPNNNHPELDPNFMSKV 81
           VGVV  L+I   V    +   KT     A ++      +  + L + +  +      SK 
Sbjct: 19  VGVVTLLMIDAFVLQNNKEDDKTKEITTAVNMNNSDAKEIQQELEDGSRNDDLSYVASKR 78

Query: 82  KVPKGPDPIHNRRIGVKGGPPGRA 106
           KVP+GPDPIHNRR G    PPGRA
Sbjct: 79  KVPRGPDPIHNRRAGNSRRPPGRA 102

The following BLAST results are available for this feature:

BLAST of Sed0010056 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891924.1	3.3e-28	71.84	uncharacterized protein LOC120081268 [Benincasa hispida]	[more]
XP_022151235.1	1.4e-26	64.76	uncharacterized protein LOC111019209 [Momordica charantia]	[more]
KAG7030819.1	6.4e-24	64.71	hypothetical protein SDJN02_04856, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011655655.1	2.7e-22	61.90	uncharacterized protein LOC105435565 [Cucumis sativus] >KGN51858.1 hypothetical ...	[more]
XP_042978760.1	4.5e-09	47.47	uncharacterized protein LOC122309350 [Carya illinoinensis] >KAG6654407.1 hypothe...	[more]

BLAST of Sed0010056 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0010056 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAM7	6.7e-27	64.76	uncharacterized protein LOC111019209 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A0A0KQF7	1.3e-22	61.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604030 PE=4 SV=1	[more]
A0A067H4U1	4.8e-09	42.11	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034371mg PE=4 SV=1	[more]
V4VGV5	4.8e-09	42.11	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033175mg PE=4 ...	[more]
A0A2H5N8H6	1.4e-08	41.05	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_022560 PE=4 SV=1	[more]

BLAST of Sed0010056 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69970.2	2.7e-04	36.90	CLAVATA3/ESR-RELATED 26	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..105
None	No IPR available	PANTHER	PTHR34277:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 12..105
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 12..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010056.1	Sed0010056.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0016020	membrane