Sed0010026 (gene) Chayote v1

Overview


Name	Sed0010026
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-H2 finger protein ATL67-like
Location	LG02: 52050616 .. 52051569 (+)
RNA-Seq Expression	Sed0010026
Synteny	Sed0010026

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGAATTGATATTGATATTGGTATTAAATGCTGCATCTGCCATGCGCACCCACCTTCCCCCAAAAAAGTAATGTGCCCTAATTCTTCATTGTTTCTTCTTCTTCTTCTTTCCCCACTAATGGCTTCTTCAACAGCATCTCCATCTCCCACTCCAAATCCTCTTCAATGTCCCCTTCTTCTTCTTCTTCCTCCTCCTTCACCGACCTTGGCCTCGGCTACGCCATCGCCATAGCTCTCGCCTTCCTCGTCCTCCTCTCCGCCCTCCTCCTCGCCTTCTACGTCTGCTGCCGCACCTCCCGCCACCGCAACCTCCGCCCCCCTCCCCCTTCCCGCTCCGATGCCGGCATCATCCTCCCTCAGATCATCTTCGTCGCCGACGACGCCTCTCCAGATCCCCACGACGACGACGACCACCCCGTCCTCGGCCTCGATCTCCCCGTCATCAACTCTTACCCTAAATTCCCCTTCTCCAAGGACAAATCCATGGCCGGCGCCGATTGCCTCTGTTCCATCTGCCTCTGCGAGTACAAGGAGGCGGAGATGCTGAGGATGATGCCGGAGTGTAGGCATTACTTCCATCTCTGTTGTATTGATGCCTGGTTGAAGCTCAACGGCTCTTGTCCGGTTTGCCGGAATTCGCCGCTCCCGACTCCGCTTTCCACTCCCTTGCAGGAGGTTGTTCCGCTCTCGCAGTACATGGCCGATCGGAGAAGAAGATGAGACTCCAATAGGTCATTCTTCTATCAGTTCTACTCTCTCTCTTCCTTGATTTCATATAATTCTCTGTTTCTTTTGCCTGTTCTTTTTTTTTAGGGAATTGTAAATTATTTGATTACATGCTGAGTTTCCCCCCTAATTTGATACAACTGTTCGACCGATACATGAATTTTTCAATTTAGGATAATTCGCTTACTCATGAATCTTTATTCTTGTGTAGATCTGTTTGTTTTGCC

mRNA sequence

GGTGAATTGATATTGATATTGGTATTAAATGCTGCATCTGCCATGCGCACCCACCTTCCCCCAAAAAAGTAATGTGCCCTAATTCTTCATTGTTTCTTCTTCTTCTTCTTTCCCCACTAATGGCTTCTTCAACAGCATCTCCATCTCCCACTCCAAATCCTCTTCAATGTCCCCTTCTTCTTCTTCTTCCTCCTCCTTCACCGACCTTGGCCTCGGCTACGCCATCGCCATAGCTCTCGCCTTCCTCGTCCTCCTCTCCGCCCTCCTCCTCGCCTTCTACGTCTGCTGCCGCACCTCCCGCCACCGCAACCTCCGCCCCCCTCCCCCTTCCCGCTCCGATGCCGGCATCATCCTCCCTCAGATCATCTTCGTCGCCGACGACGCCTCTCCAGATCCCCACGACGACGACGACCACCCCGTCCTCGGCCTCGATCTCCCCGTCATCAACTCTTACCCTAAATTCCCCTTCTCCAAGGACAAATCCATGGCCGGCGCCGATTGCCTCTGTTCCATCTGCCTCTGCGAGTACAAGGAGGCGGAGATGCTGAGGATGATGCCGGAGTGTAGGCATTACTTCCATCTCTGTTGTATTGATGCCTGGTTGAAGCTCAACGGCTCTTGTCCGGTTTGCCGGAATTCGCCGCTCCCGACTCCGCTTTCCACTCCCTTGCAGGAGGTTGTTCCGCTCTCGCAGTACATGGCCGATCGGAGAAGAAGATGAGACTCCAATAGGTCATTCTTCTATCAGTTCTACTCTCTCTCTTCCTTGATTTCATATAATTCTCTGTTTCTTTTGCCTGTTCTTTTTTTTTAGGGAATTGTAAATTATTTGATTACATGCTGAGTTTCCCCCCTAATTTGATACAACTGTTCGACCGATACATGAATTTTTCAATTTAGGATAATTCGCTTACTCATGAATCTTTATTCTTGTGTAGATCTGTTTGTTTTGCC

Coding sequence (CDS)

ATGTCCCCTTCTTCTTCTTCTTCCTCCTCCTTCACCGACCTTGGCCTCGGCTACGCCATCGCCATAGCTCTCGCCTTCCTCGTCCTCCTCTCCGCCCTCCTCCTCGCCTTCTACGTCTGCTGCCGCACCTCCCGCCACCGCAACCTCCGCCCCCCTCCCCCTTCCCGCTCCGATGCCGGCATCATCCTCCCTCAGATCATCTTCGTCGCCGACGACGCCTCTCCAGATCCCCACGACGACGACGACCACCCCGTCCTCGGCCTCGATCTCCCCGTCATCAACTCTTACCCTAAATTCCCCTTCTCCAAGGACAAATCCATGGCCGGCGCCGATTGCCTCTGTTCCATCTGCCTCTGCGAGTACAAGGAGGCGGAGATGCTGAGGATGATGCCGGAGTGTAGGCATTACTTCCATCTCTGTTGTATTGATGCCTGGTTGAAGCTCAACGGCTCTTGTCCGGTTTGCCGGAATTCGCCGCTCCCGACTCCGCTTTCCACTCCCTTGCAGGAGGTTGTTCCGCTCTCGCAGTACATGGCCGATCGGAGAAGAAGATGA

Protein sequence

MSPSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLRPPPPSRSDAGIILPQIIFVADDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR

Homology

[Close]

BLAST of Sed0010026 vs. NCBI nr
Match: XP_022933391.1 (RING-H2 finger protein ATL67-like [Cucurbita moschata])

HSP 1 Score: 313.9 bits (803), Expect = 9.0e-82
Identity = 162/188 (86.17%), Postives = 169/188 (89.89%), Query Frame = 0


Query: 2   SPSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLR----PPPPSRS 61
           S +SSS+ SF  LGLGYAIAIALAFLVLLSALLLAFYVCCR SR RNLR     PPPSRS
Sbjct: 5   STASSSNYSFAKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRPPPSRS 64

Query: 62  DAGIILPQIIFVA-DDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSI 121
           DAGIILPQIIFVA DD +PD   DDD+ V+GLD  VINSYPKFPFSKDKSMAGA+C+CSI
Sbjct: 65  DAGIILPQIIFVAEDDGAPD--RDDDNGVVGLDQAVINSYPKFPFSKDKSMAGANCVCSI 124

Query: 122 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 181
           CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ
Sbjct: 125 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 184

Query: 182 YMADRRRR 185
           YMADRRRR
Sbjct: 185 YMADRRRR 190

[Close]

BLAST of Sed0010026 vs. NCBI nr
Match: XP_022974673.1 (RING-H2 finger protein ATL67-like isoform X2 [Cucurbita maxima] >XP_022974674.1 RING-H2 finger protein ATL67-like isoform X3 [Cucurbita maxima] >XP_022975578.1 RING-H2 finger protein ATL67-like [Cucurbita maxima])

HSP 1 Score: 312.4 bits (799), Expect = 2.6e-81
Identity = 161/188 (85.64%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 2   SPSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLR----PPPPSRS 61
           S +SSS+ SF  LG GYAIAIALAFLVLLSALLLAFYVCCR SR RNLR     PPPSRS
Sbjct: 4   STASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRPPPSRS 63

Query: 62  DAGIILPQIIFVA-DDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSI 121
           DAGIILPQIIFVA DD +PD   DDD+ V+GLD  VINSYPKFPFSKDKSMAGA+C+CSI
Sbjct: 64  DAGIILPQIIFVAEDDGAPD--RDDDNGVVGLDQAVINSYPKFPFSKDKSMAGANCVCSI 123

Query: 122 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 181
           CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ
Sbjct: 124 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 183

Query: 182 YMADRRRR 185
           YMADRRRR
Sbjct: 184 YMADRRRR 189

[Close]

BLAST of Sed0010026 vs. NCBI nr
Match: XP_022974672.1 (RING-H2 finger protein ATL67-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 312.4 bits (799), Expect = 2.6e-81
Identity = 161/188 (85.64%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 2   SPSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLR----PPPPSRS 61
           S +SSS+ SF  LG GYAIAIALAFLVLLSALLLAFYVCCR SR RNLR     PPPSRS
Sbjct: 44  STASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRPPPSRS 103

Query: 62  DAGIILPQIIFVA-DDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSI 121
           DAGIILPQIIFVA DD +PD   DDD+ V+GLD  VINSYPKFPFSKDKSMAGA+C+CSI
Sbjct: 104 DAGIILPQIIFVAEDDGAPD--RDDDNGVVGLDQAVINSYPKFPFSKDKSMAGANCVCSI 163

Query: 122 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 181
           CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ
Sbjct: 164 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 223

Query: 182 YMADRRRR 185
           YMADRRRR
Sbjct: 224 YMADRRRR 229

[Close]

BLAST of Sed0010026 vs. NCBI nr
Match: XP_023540092.1 (RING-H2 finger protein ATL67-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.4 bits (799), Expect = 2.6e-81
Identity = 161/188 (85.64%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 2   SPSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLR----PPPPSRS 61
           S +SSS+ SF  LG GYAIAIALAFLVLLSALLLAFYVCCR SR RNLR     PPPSRS
Sbjct: 48  STASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRPPPSRS 107

Query: 62  DAGIILPQIIFVA-DDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSI 121
           DAGIILPQIIFVA DD +PD   DDD+ V+GLD  VINSYPKFPFSKDKSMAGA+C+CSI
Sbjct: 108 DAGIILPQIIFVAEDDGAPD--RDDDNGVVGLDQAVINSYPKFPFSKDKSMAGANCVCSI 167

Query: 122 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 181
           CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ
Sbjct: 168 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 227

Query: 182 YMADRRRR 185
           YMADRRRR
Sbjct: 228 YMADRRRR 233

[Close]

BLAST of Sed0010026 vs. NCBI nr
Match: KAG6597116.1 (RING-H2 finger protein ATL68, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028578.1 RING-H2 finger protein ATL68, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.1 bits (793), Expect = 1.3e-80
Identity = 160/188 (85.11%), Postives = 167/188 (88.83%), Query Frame = 0


Query: 2   SPSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLR----PPPPSRS 61
           S +SSS+ S   LG GYAIAIALAFLVLLSALLLAFYVCCR SR RNLR     PPPSRS
Sbjct: 5   STASSSNYSIAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRPPPSRS 64

Query: 62  DAGIILPQIIFVA-DDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSI 121
           DAGIILPQIIFVA DD +PD   DDD+ V+GLD  VINSYPKFPFSKDKSMAGA+C+CSI
Sbjct: 65  DAGIILPQIIFVAEDDGAPD--RDDDNGVVGLDQAVINSYPKFPFSKDKSMAGANCVCSI 124

Query: 122 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 181
           CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ
Sbjct: 125 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 184

Query: 182 YMADRRRR 185
           YMADRRRR
Sbjct: 185 YMADRRRR 190

[Close]

BLAST of Sed0010026 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.5e-60
Identity = 123/192 (64.06%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 3   PSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLRPPPPSRSDAGII 62
           P + + S  T LG GY+IAIAL FLVLLS +LL+ Y+CCR SR R             +I
Sbjct: 22  PQAGNHSYLTTLGFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVI 81

Query: 63  LPQIIFVADDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMA-------GADCLCS 122
           LP+IIFVA++ + D    D   V+GLD  VINSYPKF FSKD S A       G D  CS
Sbjct: 82  LPRIIFVAEEDNEDLEAGD--VVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCS 141

Query: 123 ICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLP----TPLSTPLQEV 182
           ICLCEYKEAEMLRMMPEC+HYFHLCC+DAWLKLNGSCPVCRNSPLP    TPLSTPL EV
Sbjct: 142 ICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEV 201

Query: 183 VPLSQYMADRRR 184
           VPLSQY ADRRR
Sbjct: 202 VPLSQYAADRRR 211

[Close]

BLAST of Sed0010026 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.2e-53
Identity = 114/191 (59.69%), Postives = 132/191 (69.11%), Query Frame = 0


Query: 12  TDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLRPPP-----PSRSDAGIILPQI 71
           T LGLGY+IAIAL FLVL+S ++L+ Y+CCR SR R            S SD G+I+P+I
Sbjct: 22  TSLGLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRI 81

Query: 72  IFVADDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMA----------GADCLCSI 131
           IFVA+D   D  +  +  V GLD  VINSYPKF F+KD +            G +  CSI
Sbjct: 82  IFVAED---DDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSI 141

Query: 132 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLP----TPLSTPLQEVV 184
           CLCEY E EMLRMMPEC+HYFH+ C+DAWLKLNGSCPVCRNSPLP    TP STPL EVV
Sbjct: 142 CLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVV 201

[Close]

BLAST of Sed0010026 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-28
Identity = 71/168 (42.26%), Postives = 94/168 (55.95%), Query Frame = 0


Query: 15  GLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLRPPPPSRSDAGIILPQIIFVADDAS 74
           G  Y I +++  L+L++ + L  Y C   +R++    P  +  D+  I      V  D  
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYC---TRNQLSSSPSQTNQDSTRIHHHHHHVIIDVV 122

Query: 75  PDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSICLCEYKEAEMLRMMPECR 134
           P           GLD   I SYPK  +S+ K    A C C+ICL +YK   +LR +P+C 
Sbjct: 123 P-----------GLDEDTIQSYPKILYSEAKGPTTASC-CAICLGDYKGKHLLRQLPDCN 182

Query: 135 HYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRR 183
           H FHL CID WL+LN +CPVCR SPLPTPLSTPL EVVPL+  +A  R
Sbjct: 183 HLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATR 215

[Close]

BLAST of Sed0010026 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.3e-26
Identity = 73/180 (40.56%), Postives = 102/180 (56.67%), Query Frame = 0


Query: 1   MSPSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLRPPPPSRSDAG 60
           MSP S  +S    +GLGY IAIA++ LVL+S ++LA Y+C R            S+S   
Sbjct: 1   MSPISPPASG---VGLGYGIAIAVSILVLISFIMLASYICIR------------SKSTG- 60

Query: 61  IILPQIIFVADDASPDPHDDDDHPV----LGLDLPVINSYPKFPFSKDKSMAGA-DCLCS 120
                     D+A+ D   D   P     LGLD PVI SYP+      + +    +  CS
Sbjct: 61  ---------RDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCS 120

Query: 121 ICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 176
           ICLC+Y+  E +R +PEC H FH  C+D WL+ + +CP+CRNSP P+ L+TPL ++VPL+
Sbjct: 121 ICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Sed0010026 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-24
Identity = 66/174 (37.93%), Postives = 95/174 (54.60%), Query Frame = 0


Query: 15  GLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLRPPPPS----RSDAGIILP-QIIFV 74
           GL Y I +++  L+L++ + L  Y C R+    +    P +    R   G + P Q  F 
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERF- 81

Query: 75  ADDASPDPHDDDDHPVLGLDLPVINSYPKFP-------FSKDKSMAGADCLCSICLCEYK 134
             D   D  D     VLGL   VI  +PK P       +S  K  +   C CSICL +YK
Sbjct: 82  --DFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSC-CSICLADYK 141

Query: 135 EAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 177
           + +M+R++P+C H FH  C+D WL+L+ +CPVCR SPLP+P  TP+ +VVP S+
Sbjct: 142 KMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFSR 191

[Close]

BLAST of Sed0010026 vs. ExPASy TrEMBL
Match: A0A6J1EYX3 (RING-H2 finger protein ATL67-like OS=Cucurbita moschata OX=3662 GN=LOC111440819 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.4e-82
Identity = 162/188 (86.17%), Postives = 169/188 (89.89%), Query Frame = 0


Query: 2   SPSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLR----PPPPSRS 61
           S +SSS+ SF  LGLGYAIAIALAFLVLLSALLLAFYVCCR SR RNLR     PPPSRS
Sbjct: 5   STASSSNYSFAKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRPPPSRS 64

Query: 62  DAGIILPQIIFVA-DDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSI 121
           DAGIILPQIIFVA DD +PD   DDD+ V+GLD  VINSYPKFPFSKDKSMAGA+C+CSI
Sbjct: 65  DAGIILPQIIFVAEDDGAPD--RDDDNGVVGLDQAVINSYPKFPFSKDKSMAGANCVCSI 124

Query: 122 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 181
           CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ
Sbjct: 125 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 184

Query: 182 YMADRRRR 185
           YMADRRRR
Sbjct: 185 YMADRRRR 190

[Close]

BLAST of Sed0010026 vs. ExPASy TrEMBL
Match: A0A6J1IH02 (RING-H2 finger protein ATL67-like OS=Cucurbita maxima OX=3661 GN=LOC111473352 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.3e-81
Identity = 161/188 (85.64%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 2   SPSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLR----PPPPSRS 61
           S +SSS+ SF  LG GYAIAIALAFLVLLSALLLAFYVCCR SR RNLR     PPPSRS
Sbjct: 4   STASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRPPPSRS 63

Query: 62  DAGIILPQIIFVA-DDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSI 121
           DAGIILPQIIFVA DD +PD   DDD+ V+GLD  VINSYPKFPFSKDKSMAGA+C+CSI
Sbjct: 64  DAGIILPQIIFVAEDDGAPD--RDDDNGVVGLDQAVINSYPKFPFSKDKSMAGANCVCSI 123

Query: 122 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 181
           CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ
Sbjct: 124 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 183

Query: 182 YMADRRRR 185
           YMADRRRR
Sbjct: 184 YMADRRRR 189

[Close]

BLAST of Sed0010026 vs. ExPASy TrEMBL
Match: A0A6J1IAW3 (RING-H2 finger protein ATL67-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473352 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.3e-81
Identity = 161/188 (85.64%), Postives = 168/188 (89.36%), Query Frame = 0


Query: 2   SPSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLR----PPPPSRS 61
           S +SSS+ SF  LG GYAIAIALAFLVLLSALLLAFYVCCR SR RNLR     PPPSRS
Sbjct: 44  STASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRPPPSRS 103

Query: 62  DAGIILPQIIFVA-DDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSI 121
           DAGIILPQIIFVA DD +PD   DDD+ V+GLD  VINSYPKFPFSKDKSMAGA+C+CSI
Sbjct: 104 DAGIILPQIIFVAEDDGAPD--RDDDNGVVGLDQAVINSYPKFPFSKDKSMAGANCVCSI 163

Query: 122 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 181
           CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ
Sbjct: 164 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 223

Query: 182 YMADRRRR 185
           YMADRRRR
Sbjct: 224 YMADRRRR 229

[Close]

BLAST of Sed0010026 vs. ExPASy TrEMBL
Match: A0A0A0L7B6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G121045 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.4e-80
Identity = 157/184 (85.33%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 4   SSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLR--PPPPSRSDAGI 63
           S SS+ SF+ +GLGY+IAIALAFLVLLSALLLAFYVCCR SR R+LR  PPP SRSDAGI
Sbjct: 3   SPSSTYSFSRIGLGYSIAIALAFLVLLSALLLAFYVCCRASRSRHLRRPPPPSSRSDAGI 62

Query: 64  ILPQIIFVA-DDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSICLCE 123
           ILPQIIFVA DDA+PD   DDD+ V+GLD  VINSYPKFPFS+DKSMAGA+C+CSICLCE
Sbjct: 63  ILPQIIFVAEDDAAPD--RDDDNGVVGLDQTVINSYPKFPFSRDKSMAGANCVCSICLCE 122

Query: 124 YKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMAD 183
           YK+AEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMAD
Sbjct: 123 YKDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMAD 182

Query: 184 RRRR 185
           RRRR
Sbjct: 183 RRRR 184

[Close]

BLAST of Sed0010026 vs. ExPASy TrEMBL
Match: A0A1S3AVV0 (RING-H2 finger protein ATL67 OS=Cucumis melo OX=3656 GN=LOC103483238 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.4e-80
Identity = 156/184 (84.78%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 4   SSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLR--PPPPSRSDAGI 63
           S SS+ SF+ +GLGY+IAIALAFLVLLSALLLAFYVCCR SR R+LR  PPPPSRS+ GI
Sbjct: 3   SPSSTYSFSRIGLGYSIAIALAFLVLLSALLLAFYVCCRASRSRHLRRPPPPPSRSETGI 62

Query: 64  ILPQIIFVA-DDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSICLCE 123
           ILPQIIFVA DDA+PD   DDD+ V+GLD  VINSYPKFPFS+DKSMAGA+C+CSICLCE
Sbjct: 63  ILPQIIFVAEDDAAPD--RDDDNGVVGLDQSVINSYPKFPFSRDKSMAGANCVCSICLCE 122

Query: 124 YKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMAD 183
           YK+AEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMAD
Sbjct: 123 YKDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMAD 182

Query: 184 RRRR 185
           RRRR
Sbjct: 183 RRRR 184

[Close]

BLAST of Sed0010026 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 232.6 bits (592), Expect = 2.5e-61
Identity = 123/192 (64.06%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 3   PSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLRPPPPSRSDAGII 62
           P + + S  T LG GY+IAIAL FLVLLS +LL+ Y+CCR SR R             +I
Sbjct: 22  PQAGNHSYLTTLGFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVI 81

Query: 63  LPQIIFVADDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMA-------GADCLCS 122
           LP+IIFVA++ + D    D   V+GLD  VINSYPKF FSKD S A       G D  CS
Sbjct: 82  LPRIIFVAEEDNEDLEAGD--VVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCS 141

Query: 123 ICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLP----TPLSTPLQEV 182
           ICLCEYKEAEMLRMMPEC+HYFHLCC+DAWLKLNGSCPVCRNSPLP    TPLSTPL EV
Sbjct: 142 ICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEV 201

Query: 183 VPLSQYMADRRR 184
           VPLSQY ADRRR
Sbjct: 202 VPLSQYAADRRR 211

[Close]

BLAST of Sed0010026 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 208.0 bits (528), Expect = 6.5e-54
Identity = 114/191 (59.69%), Postives = 132/191 (69.11%), Query Frame = 0


Query: 12  TDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLRPPP-----PSRSDAGIILPQI 71
           T LGLGY+IAIAL FLVL+S ++L+ Y+CCR SR R            S SD G+I+P+I
Sbjct: 22  TSLGLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRI 81

Query: 72  IFVADDASPDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMA----------GADCLCSI 131
           IFVA+D   D  +  +  V GLD  VINSYPKF F+KD +            G +  CSI
Sbjct: 82  IFVAED---DDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSI 141

Query: 132 CLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLP----TPLSTPLQEVV 184
           CLCEY E EMLRMMPEC+HYFH+ C+DAWLKLNGSCPVCRNSPLP    TP STPL EVV
Sbjct: 142 CLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVV 201

[Close]

BLAST of Sed0010026 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29
Identity = 71/168 (42.26%), Postives = 94/168 (55.95%), Query Frame = 0


Query: 15  GLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLRPPPPSRSDAGIILPQIIFVADDAS 74
           G  Y I +++  L+L++ + L  Y C   +R++    P  +  D+  I      V  D  
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYC---TRNQLSSSPSQTNQDSTRIHHHHHHVIIDVV 122

Query: 75  PDPHDDDDHPVLGLDLPVINSYPKFPFSKDKSMAGADCLCSICLCEYKEAEMLRMMPECR 134
           P           GLD   I SYPK  +S+ K    A C C+ICL +YK   +LR +P+C 
Sbjct: 123 P-----------GLDEDTIQSYPKILYSEAKGPTTASC-CAICLGDYKGKHLLRQLPDCN 182

Query: 135 HYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRR 183
           H FHL CID WL+LN +CPVCR SPLPTPLSTPL EVVPL+  +A  R
Sbjct: 183 HLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATR 215

[Close]

BLAST of Sed0010026 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 5.2e-27
Identity = 73/180 (40.56%), Postives = 102/180 (56.67%), Query Frame = 0


Query: 1   MSPSSSSSSSFTDLGLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLRPPPPSRSDAG 60
           MSP S  +S    +GLGY IAIA++ LVL+S ++LA Y+C R            S+S   
Sbjct: 1   MSPISPPASG---VGLGYGIAIAVSILVLISFIMLASYICIR------------SKSTG- 60

Query: 61  IILPQIIFVADDASPDPHDDDDHPV----LGLDLPVINSYPKFPFSKDKSMAGA-DCLCS 120
                     D+A+ D   D   P     LGLD PVI SYP+      + +    +  CS
Sbjct: 61  ---------RDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCS 120

Query: 121 ICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 176
           ICLC+Y+  E +R +PEC H FH  C+D WL+ + +CP+CRNSP P+ L+TPL ++VPL+
Sbjct: 121 ICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of Sed0010026 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 9.8e-26
Identity = 66/174 (37.93%), Postives = 95/174 (54.60%), Query Frame = 0


Query: 15  GLGYAIAIALAFLVLLSALLLAFYVCCRTSRHRNLRPPPPS----RSDAGIILP-QIIFV 74
           GL Y I +++  L+L++ + L  Y C R+    +    P +    R   G + P Q  F 
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERF- 81

Query: 75  ADDASPDPHDDDDHPVLGLDLPVINSYPKFP-------FSKDKSMAGADCLCSICLCEYK 134
             D   D  D     VLGL   VI  +PK P       +S  K  +   C CSICL +YK
Sbjct: 82  --DFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSC-CSICLADYK 141

Query: 135 EAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 177
           + +M+R++P+C H FH  C+D WL+L+ +CPVCR SPLP+P  TP+ +VVP S+
Sbjct: 142 KMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFSR 191

The following BLAST results are available for this feature:

BLAST of Sed0010026 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933391.1	9.0e-82	86.17	RING-H2 finger protein ATL67-like [Cucurbita moschata]	[more]
XP_022974673.1	2.6e-81	85.64	RING-H2 finger protein ATL67-like isoform X2 [Cucurbita maxima] >XP_022974674.1 ...	[more]
XP_022974672.1	2.6e-81	85.64	RING-H2 finger protein ATL67-like isoform X1 [Cucurbita maxima]	[more]
XP_023540092.1	2.6e-81	85.64	RING-H2 finger protein ATL67-like, partial [Cucurbita pepo subsp. pepo]	[more]
KAG6597116.1	1.3e-80	85.11	RING-H2 finger protein ATL68, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]

BLAST of Sed0010026 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82353	3.5e-60	64.06	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9M313	9.2e-53	59.69	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]
Q8RX29	1.6e-28	42.26	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FL42	7.3e-26	40.56	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9FG21	1.4e-24	37.93	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]

BLAST of Sed0010026 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EYX3	4.4e-82	86.17	RING-H2 finger protein ATL67-like OS=Cucurbita moschata OX=3662 GN=LOC111440819 ...	[more]
A0A6J1IH02	1.3e-81	85.64	RING-H2 finger protein ATL67-like OS=Cucurbita maxima OX=3661 GN=LOC111473352 PE...	[more]
A0A6J1IAW3	1.3e-81	85.64	RING-H2 finger protein ATL67-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A0A0L7B6	1.4e-80	85.33	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G121045 P...	[more]
A0A1S3AVV0	1.4e-80	84.78	RING-H2 finger protein ATL67 OS=Cucumis melo OX=3656 GN=LOC103483238 PE=4 SV=1	[more]

BLAST of Sed0010026 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46160.1	2.5e-61	64.06	RING/U-box superfamily protein	[more]
AT3G61550.1	6.5e-54	59.69	RING/U-box superfamily protein	[more]
AT2G35910.1	1.1e-29	42.26	RING/U-box superfamily protein	[more]
AT5G07040.1	5.2e-27	40.56	RING/U-box superfamily protein	[more]
AT5G06490.1	9.8e-26	37.93	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 114..155 e-value: 1.9E-5 score: 34.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 114..156 e-value: 8.1E-10 score: 38.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 114..156 score: 12.149959
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 80..160 e-value: 8.3E-20 score: 72.3
None	No IPR available	PANTHER	PTHR46592:SF6	RING-H2 FINGER PROTEIN ATL67	coord: 4..184
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 113..161
IPR044289	RING-H2 finger protein ATL67/ATL68/ATL70	PANTHER	PTHR46592	RING-H2 FINGER PROTEIN ATL67	coord: 4..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010026.1	Sed0010026.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity