Sed0010006 (gene) Chayote v1

Overview
NameSed0010006
Typegene
OrganismSechium edule (Chayote v1)
Descriptionconserved peptide upstream open reading frame 35
LocationLG10: 949772 .. 953814 (-)
RNA-Seq ExpressionSed0010006
SyntenySed0010006
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTGGACATCCTCCTTGGTGAATTATAGCAGCAACTGTGTTCGCTTGGTTGTCTTCTTTCGTGTTATTCTGTAATTTGATTTTCATTGGTGAGATTTTCATTGGTTAGAACATCTATATTTTACTGGCTCTGTTTTGTTCCCAAGGTTAGGTGTTTGTTGGGTCTATCGGGTTTATCTTTTCGATTTTTGGAGGTTTAGTGATTATTTCAAGAATTTGATACGATCCGTCCTTGGCATTTTAGGAATATTAGTATTTATTAATTATTAGTTAATTGCTATTTTAAATGTATTGGGCTTGGGCCTATTATTAGTCTGTTATTAATTAGGTCAAATTAGGATTTAGGGCTATAAATAGGAGTTGTTAGGTCATAGTCAATCATCCATTGAATTGTCGTATTTTGTACTCTGGCTCTTAGAGAGATCCTCTCGGGAGATTTATCTTATTTTAATAGAAAAGTGTGGTAGATTCTATCATTTTGGTATCAGAGCCATTTACCGATCCGGGAATGGTGACCACCAAGATGGAGGCGCGGGTTCAGGAATGCGAATCGAGTGGGGCCGAGATGTTGAAGAAGCAACAGGAATTTGAGGCTCAACTGGCAGCGATGAATAGTCGGCTGGACCAGGAGATAGGTCAGATTAACCTCAATATACAAAAGTTGCTAGAGCGTACACCGGAGCAACCACATCCCGAGACAAGCGGTTCGGACAAAGGTAAGGGATTGTCAACCGAGTCGGGAGGGGCAGGGATGGGCTTAGCGATAGGGGTCGGCGCGGGGCGACGCAAATTTGTCGGGGGGTTGGGTGGCGGTGGAGTTGGGCCCGTGCGAAAGGTGGCGAGGGTTGGCGCGAGCAGAGAGGCGACGGACGAGGAGCAGCGGCGGCGCGGCTGTGGCGGCTGGAGCTCGCCAAAAGCAGCGCGGCGGTCGCGTGTGGCCGTGAGTGTGATGTGCGAGCGCGCGAGTTCTTGAGAAGCGCTTGGGGGCGGGGACGCGAGGATTGGGGTCAGTGAGGAGGTTCGGGCGCGTGACGGAGGTTGTGAGGTGCCAGTTCGGGGCGAAGGCGCGAGAGCGCGAGGCGCTGGCGTCGGGAGGCGAGCGAGGCGAGGTGTGGCTGTTGGGTCGGGCGTGGCGGATGGCGTGGGCTGGGGCCAGGGCGGCGGCGGGGTCGGAGGCGAGCGGGGGCGTGGCGGTTGCGGGCCGGGAGTGTGGCACGACGGTGGTCAAGGGGACCGGTCGGGCCGGTCGATCGGTTCGGGTCGATGCAGGTTCGTCGGGTTGGACGAGAGAGGGGTTCCAAGGGCACGGGGACGGGGAAAGGTTTTTGGGGCCGGACATCGATCGAAGGGGGGACCCACGGGTTGACGGAAGGGGAAACAGTTTCCCAGAAGATAGGAGGGTGCGCATTGGTTACGACAGACCAATAGCGCATGATGGTTGGAACGATCGAGGCCGAAATTGGGTTGACGATTTACCGGGACCGGAGTTTGGCCAAAGGGGAGATCCAAGGGTCGGGGAGAGAAAACAAGGTTACGGAGGAGAGGAGGTTGCGCATGGGCTATGATAGGTCATTGGCGCATGAAGGTTGGAACAATAGGGGGTGGAATGACAATGTCCGAAATAGGGGCGAGATTTGGGGGGGAGGAGAAGGAAGACTCGAGCAGGGAAGTCGAGAGTAGGAGGAAAGGAGGGACCAGGGGTGTGACGGGAGATTCAGAAAGTGGAGATGCCGGTTTTCAAGGGTCTTGCTTGACGAGGATCCGGTGGGATGGTTAAGTCGGGTCGTCGAGCGTTATTTTTCAGTAAACAAATTTGATGAATATGAAGGGGTTGAGGCGGCGAGGTTATGTTTAGAAGGAGGCATTGGAGGTGGCTTCGGTATGAGGAGGATCGTGCTACTTTTCGCTCCTGGAACGAATTCAAAGATGGGTTGTTGGAGCGTTTCCAACCGGCAGCTCAGGCAAATAAGTATGCCAACTTTATGAGTTTGAAGCAAATAGGTACGGTGAAGGAATATCGCCGGAGTTTTGAGCGATTTGCTAAGGGAATGCGCGATATCAGTGCGAGTGCATTGGAGGGGAAGTGGGAAAGTGGACTAAAAGAGGAGATACTGAGCGCGATCGTAAAGCTGCGGCGATGGGCATCGAAGAGAAAATGTTTATGGCCCAAGTGATTGAGGATGATTTTGCTTTTCAAGCTACCCAAAATGAGGAAGTACTCCTACAGCGGTCAAGGCTAAAGCGGGAATGATTGTTTGGGAACCGAAGCACAACGACTCTTTCTCACGGGACTACAACCATTCAACCGAGCGTCCTATAAAAACTCACTTCAAGCCGAAATTCGAGCACGGAAGGATAAAGGGTTATGCTTCCGCTGCGATGAACAATTTTTCCCAGGACATCGTTGTCAGAAGAAGGAGCTCCAAAACTTGGATGTGTGGGTCGTTCGGGATGCGCACGAGTGCCAGGATGCTGATGTGACAGATTTTTGCGGAAGGCGGGTGTAAGAGATGGCATCGGTGATGGAACACCTTGAGGACAAGGTGGCTCTTGGGGGGGAAAGTATTGATACGATCCGTCCTTGGCATTTTAGGAATATTAGTATTTATTAATTATTAGTTAATTGCTATTTTAAATGTATTGGGCTTGGGCCTATTATTAGTCTGTTATTAATTAGGTCAAATTAGGATTTAGGGCTATAAATAGGAGTTGTTAGGTCATAGTCAATCATCCATTGAATTGTCGTATTTTGTACTCTGGCTCTTAGAGAGATCCTCTCGGGAGATTTATCTTATTTTAATAGAAAAGTGTGGTAGATTCTATCAGAATTGACCTGGAAACAAATGACTAATTTTTGCATCACATTGTTGAACTCAAAATAAAACTAATGATCAAGTTTGTGTACTTGGTAATATTATTCTTGTGCTTGTGGACTTTGGTAGCTCTCTAAGCTGTTTGCTTATGGCTGTGCGCAGGGAGGAAATTAAAACATTGACTTTGCTGGTCTTTCTTATTTTGCGGTTGCTTTATCTTTAAATTACTGGTTGGAGGAGTGAGAATGTTCATTGGTGTAACTGGAAAGAGATACAGAGGATTCAAGGAAGTTGGGAAAGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTGATGCAAGTTTGTCAGGTAATTCATTATCTTTGAATCGCATTTTGCCATGCTAGGTTTGATGTTTGTTGTTCTCATATTTTTGAAGTGCCTGAAATTTAATGTTCTAAGTTGCCTCTTTACTCATCCCAAAAATATCTTTCAACTGTAAATCGTTTTCCTTACTACATGCACTTAAGCTCCTATCTTTTTCTTTTTGAATATGAACGATTTCATTGATTCATGAAATTATTACAATATAAGATATAGATTACAAAAGATCAATAAGAGATCCAGTAATTAAGTAAGATCTAGATATCCTTTTCTAGTGTTTCACTTTTTATCCGAGTACCTATCCTTAATAATTAATAAGTATTGATAAGATTAGTTTTTACTCAAACATATTATAGATACTATCTATGTTTTGTTTTCCATCACTTTTTTTTTCTGTTTAATAGCTAAACTAAGGTTATCTAATATACTTTCATGGTATGAGGTAGCATTTTACGTATGTATTTTATCATGTCAAAATTAAGTTTTTTGCATTCTCCTCTCCTCTTCCTTCACCTTGTTACTTCAATATTATGTTTTCTGCATCTCAACAACGATTAAACATTCCACTCCTTTGGAATTCTGAATTTGGCTGTGGTTTGTGGTTTAAAATTTTGGTTTTTTTTGAGCAATGATTTAAAAAATTGGTTGATTACTGGTGACTTGTTGAATTATTGCAGCACATTTTTTTTAATCCATAGATGAATTCCTACCACACATTGTTGAACGGATCAATACGTTCAGGGTTCATTTGCTTGTTTTCACTGCTATCATTATTGAACTACTAGAACACATTTGATGACTTTCAATTTTTTCTTTACAGGCCGAGTACTTTCGCCAATTGCTAAAACCTGTCACGTAG

mRNA sequence

ATGCCGTGGACATCCTCCTTGGTGAATTATAGCAGCAACTGTGTTCGCTTGGTTGTCTTCTTTCGAGTGAGAATGTTCATTGGTGTAACTGGAAAGAGATACAGAGGATTCAAGGAAGTTGGGAAAGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTGATGCAAGTTTGTCAGGCCGAGTACTTTCGCCAATTGCTAAAACCTGTCACGTAG

Coding sequence (CDS)

ATGCCGTGGACATCCTCCTTGGTGAATTATAGCAGCAACTGTGTTCGCTTGGTTGTCTTCTTTCGAGTGAGAATGTTCATTGGTGTAACTGGAAAGAGATACAGAGGATTCAAGGAAGTTGGGAAAGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTGATGCAAGTTTGTCAGGCCGAGTACTTTCGCCAATTGCTAAAACCTGTCACGTAG

Protein sequence

MPWTSSLVNYSSNCVRLVVFFRVRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
Homology
[Close]
BLAST of Sed0010006 vs. NCBI nr
Match: PQQ06331.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-24
Identity = 62/76 (81.58%), Postives = 65/76 (85.53%), Query Frame = 0 

Query: 1  MPWTSSLVNYSSNCVRLVVFFR----VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVM 60
          MPWTSS VNYS NCVRLVVFFR    VRM IGVT KRYR  KEVGK+ MSVG+IAYYQ+M
Sbjct: 1  MPWTSSFVNYSRNCVRLVVFFRVVAGVRMNIGVTFKRYRAIKEVGKIIMSVGVIAYYQLM 60

Query: 61 QVCQAEYFRQLLKPVT 73
          QVCQAEYFRQLLKPVT
Sbjct: 61 QVCQAEYFRQLLKPVT 76

[Close]
BLAST of Sed0010006 vs. NCBI nr
Match: KAE8647743.1 (hypothetical protein Csa_002958 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 5.4e-14
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 25 MFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT 73
          M+IG+TGKR R  +E+GKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
Sbjct: 1  MYIGITGKRNRAVEEIGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT 48

[Close]
BLAST of Sed0010006 vs. NCBI nr
Match: XP_020417230.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 [Prunus persica])

HSP 1 Score: 86.7 bits (213), Expect = 9.2e-14
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 0 

Query: 11  SSNCVRLVVFFRVRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKP 70
           + NC  +V    VRM IGVT KRYR  KEVGK+ MSVG+IAYYQ+MQVCQAEYFRQLLKP
Sbjct: 121 NGNCNLVVA--GVRMNIGVTFKRYRAIKEVGKIIMSVGVIAYYQLMQVCQAEYFRQLLKP 180

Query: 71  VT 73
           VT
Sbjct: 181 VT 180

[Close]
BLAST of Sed0010006 vs. NCBI nr
Match: KAF4360142.1 (hypothetical protein F8388_000011, partial [Cannabis sativa])

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 23 VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT 73
          VRMFI ++ KRYR  KEVGK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Sbjct: 13 VRMFIAISIKRYRAVKEVGKIKMSVGVIAYYQLMQVCQAEYFRQLLKPVT 62

[Close]
BLAST of Sed0010006 vs. NCBI nr
Match: KAA3452198.1 (Transcription factor bHLH144 [Gossypium australe])

HSP 1 Score: 84.7 bits (208), Expect = 3.5e-13
Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 0 

Query: 1   MPWTSSLVNYSSNCVRLV-VFF-------------RVRMFIGVTGKRYRGFKEVGKVNMS 60
           MPW+        NCVRLV + F              VRM+I VT KRYR  KEVGK+ MS
Sbjct: 74  MPWS------FVNCVRLVGIRFLQLSFAIGKFWVGGVRMYISVTIKRYRAIKEVGKIKMS 133

Query: 61  VGIIAYYQVMQVCQAEYFRQLLKPVT 73
           VG+IAYY+++QVCQAEYFRQLLKPVT
Sbjct: 134 VGVIAYYKLVQVCQAEYFRQLLKPVT 153

[Close]
BLAST of Sed0010006 vs. ExPASy TrEMBL
Match: A0A314YMT4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_15784 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.5e-25
Identity = 62/76 (81.58%), Postives = 65/76 (85.53%), Query Frame = 0 

Query: 1  MPWTSSLVNYSSNCVRLVVFFR----VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVM 60
          MPWTSS VNYS NCVRLVVFFR    VRM IGVT KRYR  KEVGK+ MSVG+IAYYQ+M
Sbjct: 1  MPWTSSFVNYSRNCVRLVVFFRVVAGVRMNIGVTFKRYRAIKEVGKIIMSVGVIAYYQLM 60

Query: 61 QVCQAEYFRQLLKPVT 73
          QVCQAEYFRQLLKPVT
Sbjct: 61 QVCQAEYFRQLLKPVT 76

[Close]
BLAST of Sed0010006 vs. ExPASy TrEMBL
Match: A0A7J6ENW5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_000011 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.9e-14
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 23 VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT 73
          VRMFI ++ KRYR  KEVGK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Sbjct: 13 VRMFIAISIKRYRAVKEVGKIKMSVGVIAYYQLMQVCQAEYFRQLLKPVT 62

[Close]
BLAST of Sed0010006 vs. ExPASy TrEMBL
Match: A0A5B6U445 (Transcription factor bHLH144 OS=Gossypium australe OX=47621 GN=EPI10_034324 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 0 

Query: 1   MPWTSSLVNYSSNCVRLV-VFF-------------RVRMFIGVTGKRYRGFKEVGKVNMS 60
           MPW+        NCVRLV + F              VRM+I VT KRYR  KEVGK+ MS
Sbjct: 74  MPWS------FVNCVRLVGIRFLQLSFAIGKFWVGGVRMYISVTIKRYRAIKEVGKIKMS 133

Query: 61  VGIIAYYQVMQVCQAEYFRQLLKPVT 73
           VG+IAYY+++QVCQAEYFRQLLKPVT
Sbjct: 134 VGVIAYYKLVQVCQAEYFRQLLKPVT 153

[Close]
BLAST of Sed0010006 vs. ExPASy TrEMBL
Match: A0A2P5X359 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA22895 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.8e-13
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 0 

Query: 23 VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT 73
          VRM+I VT KRYR  KEVGK+ MSVG+IAYY+++QVCQAEYFRQLLKPVT
Sbjct: 27 VRMYISVTIKRYRAIKEVGKIKMSVGVIAYYKLVQVCQAEYFRQLLKPVT 76

[Close]
BLAST of Sed0010006 vs. ExPASy TrEMBL
Match: A0A251PKI6 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G077000 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.4e-13
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0 

Query: 25 MFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT 73
          M IGVT KRYR  KEVGK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Sbjct: 1  MNIGVTFKRYRAIKEVGKIIMSVGVIAYYQLMQVCQAEYFRQLLKPVT 48

[Close]
BLAST of Sed0010006 vs. TAIR 10
Match: AT1G29951.1 (conserved peptide upstream open reading frame 35 )

HSP 1 Score: 52.4 bits (124), Expect = 1.8e-07
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 32 KRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT 73
          K  R  KE+G   M+   IA YQ +QVCQAEYFRQLLKPVT
Sbjct: 8  KGNRSLKEIGTFMMTTCFIANYQSVQVCQAEYFRQLLKPVT 48

[Close]
BLAST of Sed0010006 vs. TAIR 10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40 )

HSP 1 Score: 43.9 bits (102), Expect = 6.4e-05
Identity = 26/44 (59.09%), Postives = 28/44 (63.64%), Query Frame = 0 

Query: 33 RYRGFK-EVGKVNMS---VGIIAYYQVMQVCQAEYFRQLLKPVT 73
          R+RG K E G  N S   V +I  YQ M  CQAEYFR LLKPVT
Sbjct: 10 RFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

[Close]
BLAST of Sed0010006 vs. TAIR 10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37 )

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 0 

Query: 44 NMSVGIIAYYQVMQVCQAEYFRQLLKPVT 73
          N+ V +IA +Q +Q CQAEYFRQLLKPVT
Sbjct: 23 NIVVRVIACFQPLQDCQAEYFRQLLKPVT 51

The following BLAST results are available for this feature:
BLAST of Sed0010006 vs. NCBI nr
Match NameE-valueIdentityDescription
PQQ06331.12.0e-2481.58PLASMODESMATA CALLOSE-BINDING PROTEIN 2 [Prunus yedoensis var. nudiflora][more]
KAE8647743.15.4e-1485.42hypothetical protein Csa_002958 [Cucumis sativus][more]
XP_020417230.19.2e-1472.58PLASMODESMATA CALLOSE-BINDING PROTEIN 2 [Prunus persica][more]
KAF4360142.12.0e-1380.00hypothetical protein F8388_000011, partial [Cannabis sativa][more]
KAA3452198.13.5e-1356.98Transcription factor bHLH144 [Gossypium australe][more]
BLAST of Sed0010006 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0010006 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A314YMT49.5e-2581.58PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Prunus yedoensis var. nudiflora OX=20... [more]
A0A7J6ENW59.9e-1480.00Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_000011 PE=4 SV=1[more]
A0A5B6U4451.7e-1356.98Transcription factor bHLH144 OS=Gossypium australe OX=47621 GN=EPI10_034324 PE=4... [more]
A0A2P5X3593.8e-1378.00Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA22895 PE=4 SV... [more]
A0A251PKI68.4e-1383.33Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G077000 PE=4 SV=1[more]
BLAST of Sed0010006 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G29951.11.8e-0763.41conserved peptide upstream open reading frame 35 [more]
AT5G64341.16.4e-0559.09conserved peptide upstream open reading frame 40 [more]
AT5G50011.11.1e-0468.97conserved peptide upstream open reading frame 37 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35281:SF3BNAA07G07520D PROTEINcoord: 25..72
NoneNo IPR availablePANTHERPTHR35281BNAA02G34170D PROTEINcoord: 25..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0010006.1Sed0010006.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane