Sed0010001 (gene) Chayote v1

Overview


Name	Sed0010001
Type	gene
Organism	Sechium edule (Chayote v1)
Description	serine/arginine-rich splicing factor SR34A
Location	LG05: 2429610 .. 2436929 (-)
RNA-Seq Expression	Sed0010001
Synteny	Sed0010001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAAATTTTGAATAGTAAATAATTTTCAAGTGTTTGGAAATGGAGTATTATCCCCTTAGTTCGACCTAACCCTAAACCCTTCGTTATCTCGATCAGTCGCTGCGAAAGGAGGATCGGAACTCCGTTGAGCCGTCGCTGAGCTTCGTCGGTGCAGCCTAGTTCCTCAATTTCTCAATCTCTGGTATGTTACTCTCGTTATTGCTTCCTAATTTCTGTATAATCAAACTAAGCTCATGTGCCTGTTTGGGATTGTGATTACTCTGATTCATACCATGTTCGCAATCTTTGAATTATCTTTCCTCATCTGAACTAGGGTGCGATATTTAGTTGATTCACTTGGATTTTAACCATCGTGGATAAATTTGAGTTTTACGTGCTTGATTATCATTATATTGTGTTTTATAGGCGCGTTTAATGGAAAATATATCGAGAAATGACTCGGCTCAAATATTTCATACTTTTTTTTTTTGAGTTCAAATTGGATGAGAGCTGAATGTCGATTTTCAAAATCGAACTATGACCGTGGAGTTTAATTGGATTATAACCAATTAACCAAGCCGACGTGCAACAAACCCTTTTGGTAAATATTTCATTCATTGAAGCAGCTGATTAGATGGTTGCTTACCTTCTAGTTTATTTCCATTGGGTTCTTGTCGTTGTAATCAACACAAAACTAGTGGTTGGTGTACTTTAATTCAGAAAGAAAGCTGTTTTTCTTTAGGTTTGCCTTACTTTGGACCTTTTAAACTGATAAAATGGTCTACTGGGTTAGCACCTTTATTACGTTTTGTACTTGTCACTCTTATTTCTGGTTATAGTTTGATTCGAGGTGGAATACATTTGTTTATTTTATTTTATTCGACGTTCTTGTATCTGTGTAACCATAAATTTTTATAATTGACTGGTATGTTTTTCACAATGTTCGTCTTTGCACTGAGTTAGCACTGCTAGCTATAACTAGTTGGCACCAAAGTCCGAGGTTTAATTTTTTTAATCACACTTCTGTGCGTTCATTGCGCTGAATGGATGGCACAATTTTTTTTATTTATGGAAATAAAATTCGCTCACAGAGACTTTGTATGTTGAATTTGATTTTAGTTTTGCTATTTGATAGAAAATTATGGTGCCAAAATGGGCTGAGCCTAGTGGTATCAACATGTAATTGTATCCTCGGCCAAGAGATCATAGGTTTGGGTCCCCTAAACCCCCTAATATTGTTGTATTAAAAAAATGATAGAACATTATGCTATTTCCATTTCATTTTTGTATTGATGAAGGTTGTATCGGGAGTACTAGATATTTGTGATATAACACTCATGTTTTATTTTATATGACCATGTCCTTAAATATGTCGATAAGCAAGGTAGAAAAAATTTGCACCATTCCTCTTCGGTATCAAATGCAACATTATTGAGGAATTCACTGATCATCTAAAGTTAATCAACAGAGGGCATCCTACATGTTTTTCAGGGTTGTTTTCTCAATTCTGTTATGAGAGCTGAGTAAGGTAAAAATTAATCATGTATGTCACTCTTACCCTCGTCTCATGACACAGATGCTCTCTTTATGATAGATGGCAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTATGGGTATTATTTTATTTAAATGGAGATACTTTCTCACTCTCAGAAGAGCTATGCCCTGCTTAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATAATACCTTTGGAGCATCTTGGAGCTAATGAGCAATGGAGTTGTGGAGCACGGCTCATATCGAGGATTGCTCTCTTGGTTGCTTCAATGTTTTTGGTTCTGCCTTATTTAAGAGTAAAGTTGTTGATGCAGATGACAATTGGTTATGGTGGAAGATGGTGTTTCTTTCCTTTTGATGATTCGTTGTACAGAGGTATGATGTTATGACATAACATGTGCAGGAATAATAGTTCAAACTTGGTTGAACTAATTTGTTGCGTTGAAGATGAGTAGTCGTTTTTCTCGCTCAATATATGTTGGAAACTTACCCTCAGACATACGAGAGAGTGAAGTTGAAGATTTGTTCTACAAGGTATCTTGTATATGTTCTTAATTTTAGGTCTTTTATCATGGCGACTAGTGCAAATTAATATTTTCTTTTTTCATAATACAATTCTCAATTGTTTTTTTTTTGTTTCTTAGGGGGAGGGGTACATTACAATGGTTATTTACAGCCACAGTTTTATAACTTTTATTTTAAATTTTTTATTCCCAAAAGAAAATCTTCTAGATGTATTTTGTGGCTTCTGCAGATCTATGGTTTAAATTTTGTTAACTTACGTAATCGGCATAATTGATATTTCCTTTGGCAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGGTATTGCTTTAATTTCTAGTTTTCGTATACTTTTAGCTGCATTCGAAAATTTTCTTTTCATGATATTATGTGCATTCTATCGCTAGTTTGAGAATGTTAGGGATGCAGAAGATGCTATTCGAGCTCGTGATGGATATAACTTTGATGGTTGCCGTCTAAGGGTATCAACTTAAGTTTTCCTCTTTCCTTTGTTTCCTGGTCCTGTTATTTTTAGTTTTTATATTTTCTTTTATTTTATTAGGTTGAGCTTGCACATGGTGGTAGAGGCTCTTCATCAAGTGACCGCCATAGTAGTTATGCTGGTAGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGTGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGGTGTGGGAATATATTGGATACTGCCAAGGAAGCGTGATGCCTTCCTACGTATAATATTCCTTTACTTTTACATTTGTTTCAATGCTCTCATGAATATTTAATATCACTCGCAGTTATTGTACGTGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGTGCTTGAATTTTATTGTTCAACCAAAGATTAAAGGTTTCTTTTATTGGATCATGTTGATGACTTTACTGATATAATGCTTTCAGGATCATATGCGTAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGTTTAATACACATCTTTCACCTTTAATCCGAATTTCTATATATGTGCATATATATAAATATATATATAGATATATATATTTTTTAATATAATTGCTATTTTTTTTAGTTTGTGCAAAAATGGATTTACTGTGCAGGAATGATTTCTTCATCCAATGTAGAACATTTATTTTGTTTTACAAATTCAACTATTGTGGGAATTTGTTGTAGAATGGTATTTTGGTGTTAACAAGGTGATGTCTTGTGCTACTTTGATATGTGAAGAGGCGGTAATTTCCATTGCTTTATTATAATCTAGGGCTGTATAACGACTAAAATTTATGTTATAATGCAACAGAACATTTACACTGGAACTACTACACGCTATCTGTTCTTGTATTCTCTTTAAAAGTTCAGAATAACTGTACTTCAAATTGATTTGATAAATATTTATTGAAATGAATGTGTACAGGGACGTTTGGGATGGTTGATTATACTAACTACGACGACATGAAATATGCTGTAAGTTCATGTTTCATCAGGAGTACTGCATTATTTCAATTTGCAAACTAATATGTTTTTGTTATTTAGATCCGAAAACTTGATGATACTGAATTCAAAAATCCTTGGGCAAGAGGTTACATTCGGGTGCGTTAAACTTTATTCTCTTGCTATGTTAGTTATTTTGAAGTAGCCAACTGTTATGATGTTTTTTTGTTTACAGCCTATCCTCTTTCAGCGAGCGCCTTAAGAAACGGATTTGGTTTTTTATGTAATTTTTTTGTGGTTGACATTTGGTTGCAGGTGAAGAAGCATGATGAAAGTCCTACCAAGAGTAGGAGCAGAAGCAGAAGCCGTAGTAGAAGCCGAAGTCGGAGCCGAAGCCGAATTGCCAGACGAAATAGGAGGTACCAGCCTTTTATGTTTTACTGTTATAACTTATAAGTTATAACTTCTATGGCCTGATATTATTCCTTGTAATATTTTCTTGTAAAATGCAGCAAATCAGCCGAACGATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTTCAAGGTATCTGTGGCCTATGTGTGTTTTCCCCCCTGAATTTGGATTTGCTTGGAATAGTATATGACAAACTTTTTCTTTCTAAATATGCAGACTGCGTTCAAAATCAAGATCTGGATCACCGCTTGAGGTATCAAACATCCCGTTTATTTTAATTTTTTTTTTCATAGCCGTGAGTGTCCGAGCCAGTTTGCTTGCGCACTTAGACTATTCTCACGGGACATACTGCTTTACCCTACAACATTCGGATGTCAATGAAACCCATAGAAAATTAATTCTTAGGTAGGCGTCCGCCATAGATTAAACTCACGATCTCTTAGTTTCTTAGGGCTCGTTTGATAACGTTCCCATTTCCTGTTTCTTGTTCCTGTTTCTTATTTATTGAGAAACAGTCTTGTTTGATAACTGTTCCCGTTTCTTGTTCCCAAAAATACAAGAAACGTTTCTCAAATTATGTGAAAAAATGAGAAACTCTCAAAACTTGTTTCTCTTGTTCCGTTCTTTTTTTTTTCTAAACCCAGTATTGGTTTTGTTTTATATTTTTCGTTCCAAAAAATCAACAATATTTACCTTTGGCGTGATGGTAGTGATGTCAACCCTTTTTTCCATAATTTGACCAAGTCCATGGTTCAAATCCCAACTTTGTATTTTTTTTTCAAATCATTTTTGCAATATTTATATTTTGCAATTTTTAATTCTTTTAATTTTGTATGGTTTTTTACCATTTTAATTTTTAGTTTTAAATTTTGTAATCTTTTATTGTTTATATTTTTAATGGAATTATGTATTTTTAATTTATGGGTTGATTTGAAAATTTTGTATATGTGTATTTATTTATTATTTATGTTAATAATACACTCGAAATCGGTAAAAAATTTGGTATTATGAGAAATTTGTTCACTAAAATATACAATTGACACTACCTTAATATTTTACACTCACAACATTTTTTAAACACGTCATTTGTGACAAATAATTTATGTGAGAGATAACATATTAAATTTATAGTTAGTTTTATATTAAGATTTTTTTTTTTATTATAAAAGATTTAATTATACTAGAAAATGTAAACTTTCAATGGTCATATTTTAATACATGTTATATTTTGTTAGAAGCCTATATATATATTTATATATATATAAACAAAAGCAAGAAATAAGAAACAAGAAACAAGAAATAGTTATCAAACAAGTTTGTTTCTGTTTTTTATATTTTTTAAGAAACAAGAATCAGAAACGGTTATCAAACATATTATTGTTTCTTATTCTCAAAAAATAAGAAACAAGAAACTAGAAACAAGAACTAAGAAACAAGAAACAGGAAACAGAAACGTTATCAAACGAGCCCTTAATGTCCTTTTGACCACTAGGCTACCCATGTGATGTATCCAATTTATTTATTTTTGGATAAGAAATAATTTCATAGGGATAGAACATCTATCATACTTACAAAAAAACATTCCCAGTTTGTTAATAAACAACAAGATAATTAAAAAAAAAATAATAATAACAACATAAAGCTTGCGCCTTCTTTTGCTTATTGCACCTAATCCCATTGGGCAATCAACTTAGTTCTCAAGCTTTTAATAACGCTGGAACGGCCAAATACCAACCCAAATGGTTTTAAGACTTTGCTCAGGGCAAGCGAGTGAACATGTGAGTTTTAGTCTTTTCTGCGCATCCCTGAAAGAGTGTGCACCAGTTTGTAGAAAGGGCCAAATATGGCATACGCCTTTGTAGAATCTCTTTAGTACTAATGGCTCGGCGAGACAGCTCCTGAAGGAAAAACTTTATCATTCTTTGGATCTAATGGTTTTCTTTCCATATAGACTTCCATACAGATTTCGCTATTAATCCCTTTTTGCTCATTGTATAATATAAAGCCATCTGATTGGATGCTTTTGCGTAAATTGGGTGTTTGTTTTATGGGGGGAGGGAATGAGCACGATTATATCTTCCGGTCATTGTTAGTTTTTGATTTTTTTTAAAATTTTTTAATTTGTTTTATGGGGGGAGGGAATGAGCACAATGGGAATGATGATAGAAGCTATACTAGTCGTTTCTTTCCCAATCAATCTCAAAATTATTAACCATTATGGGTTGGTCTAGTGGTCTAGAGGGCGGGAGAACTAAAGTCATGGGTATCTATGGTTTTCTGATGTTCACTGGACTACCTACATGAAAATTATTATTATTATTATTTTTTATGAATTTTCTGGACAGTTAAATGTTGTATGTCGGTTGTTTTGAGTCAAATTCCGTACCTCACACACTCACAGATTAATCTTGATACTCTAAAGGATTTGATGTTTCCCTCAAGGTCCTGGGTTCGAGACTCACATGTGACATTACGCTTTTGATATCTCCGGTACTTGGCCTCGGGACGGGCATGGCTACCCTTGTTTCAAAAAAAATAAAATAAATAAAGGATCTGATGTTCACTCTACTATGCAATGTCTTAATATTTTAAGTATAGGGACAAAGTAACACCTGTTGTAGTAATAAATTAAAGCGATGGTTTGACCGGGCAGCATGCCATATAACTGGCACGTCTTTTAAGTTCAACAAATAAGTGATGGATCTCTTGATTAATGATTACTGGGTCTCCCTTTAAGGTCCCAGGTTCGAGATTCACCCGTGACATTACTCCTTTGATGTCTTCCGGTGCTTGGCCTAGAGACGGGCGTGGTTATCCTTGTTTTTTTTTAAAAAAAAACCTCTCGATTACTGGGTCATATATATGATGCCACTAACTAAACTAACATAAGCTGAAATCTCTATTTAGGTACGAGAAGGCAGCAAATGATGCAGAGCTATGAGTTTGCAAGACGGTTATAGTTGAAGATGCAAATCCCTGATTTTAGTTTAAGGCTTATTATGCAGACTGGTTATGAGGAGTTGAAGTAGCAGAAAAATGTATGAATATCTTTTAAATCCTTTTCGCATATCATTATATGTTTGTATACGTTTCTTTAAGATATTTCCACATTGGATTTGGAATTTGAAGTCAAGATTTTAGAAATTTGATGAATGATTATTATGTTTTGTACTGTTCTTATTATCTTGTTTGAAACAAGAAAAATCTAAACTGGAAC

mRNA sequence

ATAAAAATTTTGAATAGTAAATAATTTTCAAGTGTTTGGAAATGGAGTATTATCCCCTTAGTTCGACCTAACCCTAAACCCTTCGTTATCTCGATCAGTCGCTGCGAAAGGAGGATCGGAACTCCGTTGAGCCGTCGCTGAGCTTCGTCGGTGCAGCCTAGTTCCTCAATTTCTCAATCTCTGAAAATTATGGTGCCAAAATGGGCTGAGCCTAGTGGTATCAACATGTAATTGTATCCTCGGCCAAGAGATCATAGGAATAATAGTTCAAACTTGGTTGAACTAATTTGTTGCGTTGAAGATGAGTAGTCGTTTTTCTCGCTCAATATATGTTGGAAACTTACCCTCAGACATACGAGAGAGTGAAGTTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCTATTCGAGCTCGTGATGGATATAACTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCTCTTCATCAAGTGACCGCCATAGTAGTTATGCTGGTAGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGTGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGTAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACGTTTGGGATGGTTGATTATACTAACTACGACGACATGAAATATGCTATCCGAAAACTTGATGATACTGAATTCAAAAATCCTTGGGCAAGAGGTTACATTCGGGTGAAGAAGCATGATGAAAGTCCTACCAAGAGTAGGAGCAGAAGCAGAAGCCGTAGTAGAAGCCGAAGTCGGAGCCGAAGCCGAATTGCCAGACGAAATAGGAGCAAATCAGCCGAACGATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTTCAAGACTGCGTTCAAAATCAAGATCTGGATCACCGCTTGAGGTACGAGAAGGCAGCAAATGATGCAGAGCTATGAGTTTGCAAGACGGTTATAGTTGAAGATGCAAATCCCTGATTTTAGTTTAAGGCTTATTATGCAGACTGGTTATGAGGAGTTGAAGTAGCAGAAAAATGTATGAATATCTTTTAAATCCTTTTCGCATATCATTATATGTTTGTATACGTTTCTTTAAGATATTTCCACATTGGATTTGGAATTTGAAGTCAAGATTTTAGAAATTTGATGAATGATTATTATGTTTTGTACTGTTCTTATTATCTTGTTTGAAACAAGAAAAATCTAAACTGGAAC

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCTCGCTCAATATATGTTGGAAACTTACCCTCAGACATACGAGAGAGTGAAGTTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCGCGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCTATTCGAGCTCGTGATGGATATAACTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCTCTTCATCAAGTGACCGCCATAGTAGTTATGCTGGTAGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGTGGAGGAGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGTAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCCCGTGACAGTGAAGGGACGTTTGGGATGGTTGATTATACTAACTACGACGACATGAAATATGCTATCCGAAAACTTGATGATACTGAATTCAAAAATCCTTGGGCAAGAGGTTACATTCGGGTGAAGAAGCATGATGAAAGTCCTACCAAGAGTAGGAGCAGAAGCAGAAGCCGTAGTAGAAGCCGAAGTCGGAGCCGAAGCCGAATTGCCAGACGAAATAGGAGCAAATCAGCCGAACGATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTTCAAGACTGCGTTCAAAATCAAGATCTGGATCACCGCTTGAGGTACGAGAAGGCAGCAAATGA

Protein sequence

MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTNYDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPTKSRSRSRSRSRSRSRSRSRIARRNRSKSAERSVSRSVSRSRSPSPVKSSRLRSKSRSGSPLEVREGSK

Homology

[Close]

BLAST of Sed0010001 vs. NCBI nr
Match: XP_022137780.1 (serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137782.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137783.1 serine/arginine-rich splicing factor SR34A [Momordica charantia])

HSP 1 Score: 443.7 bits (1140), Expect = 1.2e-120
Identity = 255/285 (89.47%), Postives = 264/285 (92.63%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSR+IYVGNLPSDI+E E+EDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AIRARDGYNFDGCRLRVELAHGGRG SSSDR SSY      GGGGGGGGGGGG   GGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY------GGGGGGGGGGGG---GGGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFG+VDYTN
Sbjct: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPTKSRSRSRSRSRSRSR--SRSRIARR 240
           YDDMKYAIRKLDDTEFKNPWAR YIRVKK+D SPT+SRSRSRSRSRSRSR  SRSR ARR
Sbjct: 181 YDDMKYAIRKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSQSRSRSARR 240

Query: 241 NRSKSAERSVSRSVSRSRSPSPVKSSRLRSKSRSGSPLEVREGSK 284
           NRSKS ERSVSRSVSRSRSPSPVKSSR RSKSRSGSP E REGS+
Sbjct: 241 NRSKSVERSVSRSVSRSRSPSPVKSSRPRSKSRSGSPREGREGSE 276

[Close]

BLAST of Sed0010001 vs. NCBI nr
Match: XP_023533518.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 435.3 bits (1118), Expect = 4.1e-118
Identity = 243/286 (84.97%), Postives = 252/286 (88.11%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSR+IYVGNLPSDIRE+E+EDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AIR RDGYNFDGCRLRVELAHGGRG SSSD  S+Y GSGG                GGGG
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGG----------------GGGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTN
Sbjct: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPT----KSRSRSRSRSRSRSRSRSRIA 240
           YDDMKYAIRKLDDTEFKNPWAR YIRVKK++ SPT    ++RSRSRSRSRSRSRSRSR A
Sbjct: 181 YDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSA 240

Query: 241 RRNRSKSAERSVSRSVSRSRSPSPVKSSRLRSKSRSGSPLEVREGS 283
           RRNRSKSAE+SVSRSVSRSRS SPVKSSR RSKSRSGSP E REGS
Sbjct: 241 RRNRSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 270

[Close]

BLAST of Sed0010001 vs. NCBI nr
Match: XP_038907230.1 (serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907232.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907233.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida])

HSP 1 Score: 432.6 bits (1111), Expect = 2.7e-117
Identity = 247/295 (83.73%), Postives = 257/295 (87.12%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSR+IYVGNLPSDI+E E+EDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AIRARDGYNFDGCRLRVELAHGGRG SSSDR SSY            GGGG G   GGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY------------GGGGSG---GGGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
            GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTN
Sbjct: 121 AGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPTKSRSRSRSRSRSRSRSRSRI----- 240
           YDDMKYA+RKLDDTEF+NPWAR YIRVKK+D SPT+SRSRSRSRSRSRSRSRSR      
Sbjct: 181 YDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSR 240

Query: 241 -------ARRNRSKSAERSVSRSVSRSRSPSPVKSSRLRSKSRSGSPLEVREGSK 284
                  ARRNRSKSAERSVSRSVSRSRSPSPVKSSR RSKSRSGSP + REGS+
Sbjct: 241 SRSRSRPARRNRSKSAERSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQAREGSE 280

[Close]

BLAST of Sed0010001 vs. NCBI nr
Match: XP_022958290.1 (serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958291.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958292.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958294.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_022958295.1 serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata])

HSP 1 Score: 430.3 bits (1105), Expect = 1.3e-116
Identity = 236/282 (83.69%), Postives = 245/282 (86.88%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSR+IYVGNLPSDIRE+E+EDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AIR RDGYNFDGCRLRVELAHGGRG SSSD  S+Y                     GG G
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY---------------------GGSG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTN
Sbjct: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPTKSRSRSRSRSRSRSRSRSRIARRNR 240
           YDDMKYAIRKLDDTEFKNPWAR YIRVKK++ SPT+ RSR+RSRSRSRSRSRSR  RRNR
Sbjct: 181 YDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSVRRNR 240

Query: 241 SKSAERSVSRSVSRSRSPSPVKSSRLRSKSRSGSPLEVREGS 283
           SKSAE+SVSRSVSRSRS SPVKSSR RSKSRSGSP E REGS
Sbjct: 241 SKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 261

[Close]

BLAST of Sed0010001 vs. NCBI nr
Match: XP_023533513.1 (serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533515.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533516.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533517.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 429.5 bits (1103), Expect = 2.3e-116
Identity = 243/290 (83.79%), Postives = 252/290 (86.90%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYK----YGRILDIELKIPPRPPCYCFVEFENVR 60
           MSSRFSR+IYVGNLPSDIRE+E+EDLFYK    YGRILDIELKIPPRPPCYCFVEFENVR
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKFLWQYGRILDIELKIPPRPPCYCFVEFENVR 60

Query: 61  DAEDAIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGR 120
           DAEDAIR RDGYNFDGCRLRVELAHGGRG SSSD  S+Y GSGG                
Sbjct: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGG---------------- 120

Query: 121 GGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMV 180
           GGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG V
Sbjct: 121 GGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTV 180

Query: 181 DYTNYDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPT----KSRSRSRSRSRSRSRSR 240
           DYTNYDDMKYAIRKLDDTEFKNPWAR YIRVKK++ SPT    ++RSRSRSRSRSRSRSR
Sbjct: 181 DYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSR 240

Query: 241 SRIARRNRSKSAERSVSRSVSRSRSPSPVKSSRLRSKSRSGSPLEVREGS 283
           SR ARRNRSKSAE+SVSRSVSRSRS SPVKSSR RSKSRSGSP E REGS
Sbjct: 241 SRSARRNRSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 274

[Close]

BLAST of Sed0010001 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 4.0e-100
Identity = 216/311 (69.45%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRSIYVGNLP DIRE E+ED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDR             GG GGGG G G GGGG
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR------------GGYGGGGSGYGGGGGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GG  RFGVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTN
Sbjct: 121 GGSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPTKSRSRSRSRSRSRSRSRSR------ 240
           YDDMKYAIRKLDDTEF+NPWARG+IRVKK++ S ++SRS SRSRSRSRSRSRSR      
Sbjct: 181 YDDMKYAIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSH 240

Query: 241 ----------IARRNRSKSAERSVSRSVSRSRSPSPVKS-------------SRLRSKSR 283
                       R++ SKS  RS+SRS+S+SRSPSP K              SR RS+S 
Sbjct: 241 SRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSP 299

[Close]

BLAST of Sed0010001 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 9.4e-73
Identity = 181/302 (59.93%), Postives = 217/302 (71.85%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SR++YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AI  RDGY+FDG RLRVELAHGGR SS   R           G   GGG GGGRGRG GG
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGRRSSDDTR-----------GSFNGGGRGGGRGRGDGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
                 G S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT 
Sbjct: 121 SR----GPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTC 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHD-----------ESPTKSRSRSRSRSRSRS 240
           Y+DMKYA++KLDDTEF+N ++ GY+RV+++D            S +KSRSRSR RS SRS
Sbjct: 181 YEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRS 240

Query: 241 RSRSRIARRN-RSKSAERSVSRSVSR-------SRSPSPVKSSRLRSKSRSGSPLEVREG 284
           RSRSR   R+ ++KS+ RS ++S SR       SRSPSP +S   RS+SRS  P   +EG
Sbjct: 241 RSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRS---RSRSRSPLPSVQKEG 284

[Close]

BLAST of Sed0010001 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 7.9e-72
Identity = 174/283 (61.48%), Postives = 205/283 (72.44%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SR+IYVGNLP DIRE EVEDLF KYG ++ I+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AI  RDGY+FDG  LRVELAHGGR  SS D   SY+G G G             GRGGG 
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRGRG-------------GRGGGD 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GGG   G S+RSEYRV+V GLPSSASWQDLKDHMRK G+VCF++V RD  GT G+VDYT+
Sbjct: 121 GGGRERGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTS 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHD-----ESPTKSRSRSRSRSRSRSRSRSRI 240
           Y+DMKYA   LDDTEF+N ++  Y+RV+++D      SP++ RS S+SRSR RS SRSR 
Sbjct: 181 YEDMKYA---LDDTEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRS 240

Query: 241 ARRNRSKSAE---RSVSRSVSRSRSPSPVKSSRLRSKSRSGSP 276
             R+RSKS     +S+ RS ++S S SP   SR RSKSRS SP
Sbjct: 241 RSRSRSKSRSPKAKSLRRSPAKSTSRSP--RSRSRSKSRSLSP 264

[Close]

BLAST of Sed0010001 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 4.1e-68
Identity = 168/294 (57.14%), Postives = 203/294 (69.05%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR++R+IYVGNLP DIR+ EVEDLFYKYG I+DI+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRG-SSSSDRH-SSYAGSGGGGGGGGGGGGGGGRGRGG 120
           AI  RDGY+FDGCRLRVE+AHGGR  S S DR+ SSY+ S                    
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR------------------- 120

Query: 121 GGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDY 180
                     S+RS+YRV+V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G+VDY
Sbjct: 121 --------APSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDY 180

Query: 181 TNYDDMKYAIRKLDDTEFKNPWARGYIRVKKHD-----ESPTKSRS-RSRSRSR------ 240
           +NYDDMKYAIRKLD TEF+N ++  YIRV++++      SP  S+S RSRSRSR      
Sbjct: 181 SNYDDMKYAIRKLDATEFRNAFSSAYIRVREYESRSVSRSPDDSKSYRSRSRSRGPSCSY 240

Query: 241 -SRSRSRS---RIARRNRSKSAERSVSRSVSRSRSPSPVKSSRLRSKSRSGSPL 277
            S+SRS S    I+ R+R  S  RS+  SVSRS+S      S+ RS+SRS SP+
Sbjct: 241 SSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQS-----RSKSRSRSRSNSPV 262

[Close]

BLAST of Sed0010001 vs. ExPASy Swiss-Prot
Match: Q6DII2 (Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis OX=8364 GN=srsf1 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.1e-52
Identity = 154/259 (59.46%), Postives = 181/259 (69.88%), Query Frame = 0


Query: 9   IYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGY 68
           IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+  RDGY
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77

Query: 69  NFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGGGGG---GR 128
           ++DG RLRVE    GRG+          G GGGGGGGGGGGGGGG G GGGGGGG   GR
Sbjct: 78  DYDGYRLRVEFPRSGRGAGG-------RGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGR 137

Query: 129 FG-VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTNYDDM 188
           +G  S+RSEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT G+V++   +DM
Sbjct: 138 YGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDM 197

Query: 189 KYAIRKLDDTEFK-NPWARGYIRVKKHDESPTKSRSRSRSRSRSRSRSRSRIARRNRSKS 248
            YA+RKLD+T+F+ +     YIRVK  D   + S  RSRSRSRSRSRSRSR   R+RS S
Sbjct: 198 TYAVRKLDNTKFRSHEGETAYIRVKV-DGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYS 257

Query: 249 AERS-----VSRSVSRSRS 258
             RS      S   SRSRS
Sbjct: 258 PRRSRGSPRYSPRHSRSRS 265

[Close]

BLAST of Sed0010001 vs. ExPASy TrEMBL
Match: A0A6J1C7M8 (serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC111009138 PE=4 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.6e-121
Identity = 255/285 (89.47%), Postives = 264/285 (92.63%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSR+IYVGNLPSDI+E E+EDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AIRARDGYNFDGCRLRVELAHGGRG SSSDR SSY      GGGGGGGGGGGG   GGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY------GGGGGGGGGGGG---GGGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFG+VDYTN
Sbjct: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPTKSRSRSRSRSRSRSR--SRSRIARR 240
           YDDMKYAIRKLDDTEFKNPWAR YIRVKK+D SPT+SRSRSRSRSRSRSR  SRSR ARR
Sbjct: 181 YDDMKYAIRKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSQSRSRSARR 240

Query: 241 NRSKSAERSVSRSVSRSRSPSPVKSSRLRSKSRSGSPLEVREGSK 284
           NRSKS ERSVSRSVSRSRSPSPVKSSR RSKSRSGSP E REGS+
Sbjct: 241 NRSKSVERSVSRSVSRSRSPSPVKSSRPRSKSRSGSPREGREGSE 276

[Close]

BLAST of Sed0010001 vs. ExPASy TrEMBL
Match: A0A0A0KLR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 9.6e-121
Identity = 257/288 (89.24%), Postives = 268/288 (93.06%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSR+IYVGNLPSDI+E E+EDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AIRARDGYNFDGCRLRVELAHGGRG SSSDR SSY   GGGGGGGGGGGGGGG   GGGG
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY---GGGGGGGGGGGGGGG---GGGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTN
Sbjct: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPT----KSRSRSRSRSRSRSRSRSRIA 240
           YDDMKYAIRKLDDTEF+NPWAR YIRVKK+D SPT    +SRSRSRSRSRSRSRSRSR A
Sbjct: 181 YDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTA 240

Query: 241 RRNRSKSAE-RSVSRSVSRSRSPSPVKSSRLRSKSRSGSPLEVREGSK 284
           RRNRSKSAE RSVSRSVSRSRSPSP+KSSR RSKSRSGSP + REGS+
Sbjct: 241 RRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGSE 282

[Close]

BLAST of Sed0010001 vs. ExPASy TrEMBL
Match: A0A6J1H330 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN=LOC111459559 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 6.4e-117
Identity = 236/282 (83.69%), Postives = 245/282 (86.88%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSR+IYVGNLPSDIRE+E+EDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AIR RDGYNFDGCRLRVELAHGGRG SSSD  S+Y                     GG G
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY---------------------GGSG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTN
Sbjct: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPTKSRSRSRSRSRSRSRSRSRIARRNR 240
           YDDMKYAIRKLDDTEFKNPWAR YIRVKK++ SPT+ RSR+RSRSRSRSRSRSR  RRNR
Sbjct: 181 YDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSVRRNR 240

Query: 241 SKSAERSVSRSVSRSRSPSPVKSSRLRSKSRSGSPLEVREGS 283
           SKSAE+SVSRSVSRSRS SPVKSSR RSKSRSGSP E REGS
Sbjct: 241 SKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 261

[Close]

BLAST of Sed0010001 vs. ExPASy TrEMBL
Match: A0A6J1K1U7 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=LOC111491646 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 7.1e-116
Identity = 238/288 (82.64%), Postives = 247/288 (85.76%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSRFSR+IYVGNLPSDIRE+E+EDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AIR RDGYNFDGCRLRVELAHGGRG SSSD  S+Y                     GG G
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY---------------------GGSG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEGTFG VDYTN
Sbjct: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPT------KSRSRSRSRSRSRSRSRSR 240
           YDDMKYAIRKLDDTEFKNPWAR YIRVKK++ SPT      +SRSRSRSRSRSRSRSRSR
Sbjct: 181 YDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSR 240

Query: 241 IARRNRSKSAERSVSRSVSRSRSPSPVKSSRLRSKSRSGSPLEVREGS 283
            A+RNRSKSAE+SVSRSVSRSRS SPVKSSR RSKSRSGSP E REGS
Sbjct: 241 SAKRNRSKSAEQSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREAREGS 267

[Close]

BLAST of Sed0010001 vs. ExPASy TrEMBL
Match: A0A6P9EHX7 (serine/arginine-rich splicing factor SR34A-like OS=Juglans regia OX=51240 GN=LOC108998109 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.9e-114
Identity = 235/282 (83.33%), Postives = 253/282 (89.72%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRSIYVGNLP+DIRESE+EDLFYKYGRILDIELKIPPRPPCYCFVEF++ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPADIRESEIEDLFYKYGRILDIELKIPPRPPCYCFVEFDSTRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AIR RDGYNFDGCRLRVELAHGGRGSSSSDR   Y+G GGGGGGGGGG        GGGG
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGSSSSDRRGGYSGGGGGGGGGGGG--------GGGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
             GGRFGVS+ SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTN
Sbjct: 121 SSGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPTKSRSRSRSRSRSRSRSRSRIARRNR 240
           +DDMKYAIRKLDDTEF+NPWAR YIRVKK++ S ++SRSRSRSRS+SRSRSRSR  RR+R
Sbjct: 181 HDDMKYAIRKLDDTEFRNPWARAYIRVKKYESSRSRSRSRSRSRSQSRSRSRSRGERRDR 240

Query: 241 SKSAERSVSRSVSRSRSPSPVKSSRLRSKSRSGSPLEVREGS 283
           SKS ERS+SRSVSRSRS SPVKSSR RS+SRSGSP + R GS
Sbjct: 241 SKSLERSISRSVSRSRSASPVKSSRPRSRSRSGSPHQARSGS 274

[Close]

BLAST of Sed0010001 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 365.9 bits (938), Expect = 2.9e-101
Identity = 216/311 (69.45%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRSIYVGNLP DIRE E+ED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDR             GG GGGG G G GGGG
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR------------GGYGGGGSGYGGGGGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GG  RFGVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTN
Sbjct: 121 GGSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPTKSRSRSRSRSRSRSRSRSR------ 240
           YDDMKYAIRKLDDTEF+NPWARG+IRVKK++ S ++SRS SRSRSRSRSRSRSR      
Sbjct: 181 YDDMKYAIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSH 240

Query: 241 ----------IARRNRSKSAERSVSRSVSRSRSPSPVKS-------------SRLRSKSR 283
                       R++ SKS  RS+SRS+S+SRSPSP K              SR RS+S 
Sbjct: 241 SRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSP 299

[Close]

BLAST of Sed0010001 vs. TAIR 10
Match: AT3G49430.3 (SER/ARG-rich protein 34A )

HSP 1 Score: 365.9 bits (938), Expect = 2.9e-101
Identity = 216/311 (69.45%), Postives = 241/311 (77.49%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRSIYVGNLP DIRE E+ED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDR             GG GGGG G G GGGG
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR------------GGYGGGGSGYGGGGGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GG  RFGVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTN
Sbjct: 121 GGSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPTKSRSRSRSRSRSRSRSRSR------ 240
           YDDMKYAIRKLDDTEF+NPWARG+IRVKK++ S ++SRS SRSRSRSRSRSRSR      
Sbjct: 181 YDDMKYAIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSH 240

Query: 241 ----------IARRNRSKSAERSVSRSVSRSRSPSPVKS-------------SRLRSKSR 283
                       R++ SKS  RS+SRS+S+SRSPSP K              SR RS+S 
Sbjct: 241 SRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSP 299

[Close]

BLAST of Sed0010001 vs. TAIR 10
Match: AT3G49430.2 (SER/ARG-rich protein 34A )

HSP 1 Score: 354.8 bits (909), Expect = 6.6e-98
Identity = 205/276 (74.28%), Postives = 228/276 (82.61%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MS RFSRSIYVGNLP DIRE E+ED+FYKYGRI+DIELK+PPRPPCYCFVEFE+ RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDR             GG GGGG G G GGGG
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR------------GGYGGGGSGYGGGGGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
           GG  RFGVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTN
Sbjct: 121 GGSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTN 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHDESPTKSRSRSRSRSRSRSRSRSRIARRNR 240
           YDDMKYAIRKLDDTEF+NPWARG+IRVKK++ S ++SRS SRSRSRSRSRSRSR   R+ 
Sbjct: 181 YDDMKYAIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSH 240

Query: 241 SKSAERSVSRSVSRSRSPSPVKS-SRLRSKSRSGSP 276
           S+S   S S+S  +  S SP +S SR  SKSRS SP
Sbjct: 241 SRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSP 264

[Close]

BLAST of Sed0010001 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 275.0 bits (702), Expect = 6.7e-74
Identity = 181/302 (59.93%), Postives = 217/302 (71.85%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SR++YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AI  RDGY+FDG RLRVELAHGGR SS   R           G   GGG GGGRGRG GG
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGRRSSDDTR-----------GSFNGGGRGGGRGRGDGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
                 G S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT 
Sbjct: 121 SR----GPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTC 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHD-----------ESPTKSRSRSRSRSRSRS 240
           Y+DMKYA++KLDDTEF+N ++ GY+RV+++D            S +KSRSRSR RS SRS
Sbjct: 181 YEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRS 240

Query: 241 RSRSRIARRN-RSKSAERSVSRSVSR-------SRSPSPVKSSRLRSKSRSGSPLEVREG 284
           RSRSR   R+ ++KS+ RS ++S SR       SRSPSP +S   RS+SRS  P   +EG
Sbjct: 241 RSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRS---RSRSRSPLPSVQKEG 284

[Close]

BLAST of Sed0010001 vs. TAIR 10
Match: AT1G02840.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 275.0 bits (702), Expect = 6.7e-74
Identity = 181/302 (59.93%), Postives = 217/302 (71.85%), Query Frame = 0


Query: 1   MSSRFSRSIYVGNLPSDIRESEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60
           MSSR SR++YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGSSSSDRHSSYAGSGGGGGGGGGGGGGGGRGRGGGG 120
           AI  RDGY+FDG RLRVELAHGGR SS   R           G   GGG GGGRGRG GG
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGRRSSDDTR-----------GSFNGGGRGGGRGRGDGG 120

Query: 121 GGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGMVDYTN 180
                 G S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT 
Sbjct: 121 SR----GPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTC 180

Query: 181 YDDMKYAIRKLDDTEFKNPWARGYIRVKKHD-----------ESPTKSRSRSRSRSRSRS 240
           Y+DMKYA++KLDDTEF+N ++ GY+RV+++D            S +KSRSRSR RS SRS
Sbjct: 181 YEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRS 240

Query: 241 RSRSRIARRN-RSKSAERSVSRSVSR-------SRSPSPVKSSRLRSKSRSGSPLEVREG 284
           RSRSR   R+ ++KS+ RS ++S SR       SRSPSP +S   RS+SRS  P   +EG
Sbjct: 241 RSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRS---RSRSRSPLPSVQKEG 284

The following BLAST results are available for this feature:

BLAST of Sed0010001 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137780.1	1.2e-120	89.47	serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1...	[more]
XP_023533518.1	4.1e-118	84.97	serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_038907230.1	2.7e-117	83.73	serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 s...	[more]
XP_022958290.1	1.3e-116	83.69	serine/arginine-rich splicing factor SR34A-like [Cucurbita moschata] >XP_0229582...	[more]
XP_023533513.1	2.3e-116	83.79	serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp...	[more]

BLAST of Sed0010001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVS6	4.0e-100	69.45	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
O22315	9.4e-73	59.93	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
F4JHI7	7.9e-72	61.48	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9XFR5	4.1e-68	57.14	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
Q6DII2	1.1e-52	59.46	Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis OX=8364 GN=srsf1 PE...	[more]

BLAST of Sed0010001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C7M8	5.6e-121	89.47	serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A0A0KLR9	9.6e-121	89.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1	[more]
A0A6J1H330	6.4e-117	83.69	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K1U7	7.1e-116	82.64	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6P9EHX7	3.9e-114	83.33	serine/arginine-rich splicing factor SR34A-like OS=Juglans regia OX=51240 GN=LOC...	[more]

BLAST of Sed0010001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49430.1	2.9e-101	69.45	SER/ARG-rich protein 34A	[more]
AT3G49430.3	2.9e-101	69.45	SER/ARG-rich protein 34A	[more]
AT3G49430.2	6.6e-98	74.28	SER/ARG-rich protein 34A	[more]
AT1G02840.1	6.7e-74	59.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.3	6.7e-74	59.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 135..208 e-value: 3.6E-7 score: 39.8 coord: 8..78 e-value: 7.4E-22 score: 88.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 136..198 e-value: 4.6E-12 score: 45.6 coord: 9..76 e-value: 8.7E-19 score: 67.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 134..212 score: 10.343133
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..82 score: 16.670687
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..129 e-value: 1.8E-27 score: 98.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 133..211 e-value: 2.0E-23 score: 84.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..271
None	No IPR available	PANTHER	PTHR23147:SF63	SERINE/ARGININE-RICH SPLICING FACTOR SR34A	coord: 2..280
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 2..280
None	No IPR available	CDD	cd12599	RRM1_SF2_plant_like	coord: 9..79 e-value: 6.06484E-43 score: 139.517
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 134..209 e-value: 2.25764E-43 score: 140.72
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010001.1	Sed0010001.1	mRNA
Sed0010001.2	Sed0010001.2	mRNA
Sed0010001.3	Sed0010001.3	mRNA
Sed0010001.4	Sed0010001.4	mRNA
Sed0010001.5	Sed0010001.5	mRNA
Sed0010001.6	Sed0010001.6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding