Sed0009978 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CATCCGTCTCTCCTTCTTTTCCAATCTTTTCTCAAATTTCTTTAAATATAATTTCTTTCATTCCCTTTTCTCAATTTCCTTTTTTTGCGGGGTTTTTTGTTTTTCCTATTTTAGCCCCTTGTAAATTATTGCCTGTGGGGGGTTTATTTGTAAATTAGCAATTGTTCGAGGGTGTTTTGTTTAATATTTTTGGAGATAAAGCGTGCAAATTTTGAAGGAAATTATATTTTGGGAGGTGGTGCTGACGTGGCATGCATTGGTAGAGTAGGTTTAGGTTCGGAGGTGGGGCCCGAGATGAATACCACCAAATCGCTGCGTTTACCTCCTCGTAGATTAATCACGAGTTCTGGGCCCAGTTCTAGGCCCAATAAGAGGGGCCTCGACGAGGCCCACCAAGTGTCGTTTACGGCTAAATTGGCCAAGCCAGCACCGACGGGTTCGAACCGGCTCCTAGCCGGCTATTTGGCTCACGAGTTTCTCACCAACGGGACACTTTTCGGGCGGCCTTGGGACCACCAGCCGGCTGAGGGTTCCGGTTCAGCCGCCCAGCCAACCGAGAAACGCGAAGCCGAGCCGGAGCTGCACCGGAAGAATTATCAGTCCTACGTGGAGGTGTCTAATTTGTTCAAACATCGTGGGGCCCACTTTGAAGGAATTGTGAATCCCACCCAGCTAGCTAGCTTGCTAAACTTGTGA CATCCGTCTCTCCTTCTTTTCCAATCTTTTCTCAAATTTCTTTAAATATAATTTCTTTCATTCCCTTTTCTCAATTTCCTTTTTTTGCGGGGTTTTTTGTTTTTCCTATTTTAGCCCCTTGTAAATTATTGCCTGTGGGGGGTTTATTTGTAAATTAGCAATTGTTCGAGGGTGTTTTGTTTAATATTTTTGGAGATAAAGCGTGCAAATTTTGAAGGAAATTATATTTTGGGAGGTGGTGCTGACGTGGCATGCATTGGTAGAGTAGGTTTAGGTTCGGAGGTGGGGCCCGAGATGAATACCACCAAATCGCTGCGTTTACCTCCTCGTAGATTAATCACGAGTTCTGGGCCCAGTTCTAGGCCCAATAAGAGGGGCCTCGACGAGGCCCACCAAGTGTCGTTTACGGCTAAATTGGCCAAGCCAGCACCGACGGGTTCGAACCGGCTCCTAGCCGGCTATTTGGCTCACGAGTTTCTCACCAACGGGACACTTTTCGGGCGGCCTTGGGACCACCAGCCGGCTGAGGGTTCCGGTTCAGCCGCCCAGCCAACCGAGAAACGCGAAGCCGAGCCGGAGCTGCACCGGAAGAATTATCAGTCCTACGTGGAGGTGTCTAATTTGTTCAAACATCGTGGGGCCCACTTTGAAGGAATTGTGAATCCCACCCAGCTAGCTAGCTTGCTAAACTTGTGA ATGAATACCACCAAATCGCTGCGTTTACCTCCTCGTAGATTAATCACGAGTTCTGGGCCCAGTTCTAGGCCCAATAAGAGGGGCCTCGACGAGGCCCACCAAGTGTCGTTTACGGCTAAATTGGCCAAGCCAGCACCGACGGGTTCGAACCGGCTCCTAGCCGGCTATTTGGCTCACGAGTTTCTCACCAACGGGACACTTTTCGGGCGGCCTTGGGACCACCAGCCGGCTGAGGGTTCCGGTTCAGCCGCCCAGCCAACCGAGAAACGCGAAGCCGAGCCGGAGCTGCACCGGAAGAATTATCAGTCCTACGTGGAGGTGTCTAATTTGTTCAAACATCGTGGGGCCCACTTTGAAGGAATTGTGAATCCCACCCAGCTAGCTAGCTTGCTAAACTTGTGA MNTTKSLRLPPRRLITSSGPSSRPNKRGLDEAHQVSFTAKLAKPAPTGSNRLLAGYLAHEFLTNGTLFGRPWDHQPAEGSGSAAQPTEKREAEPELHRKNYQSYVEVSNLFKHRGAHFEGIVNPTQLASLLNL Homology
BLAST of Sed0009978 vs. NCBI nr
Match: KAG7014604.1 (hypothetical protein SDJN02_24783, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 170.2 bits (430), Expect = 1.2e-38 Identity = 90/132 (68.18%), Postives = 100/132 (75.76%), Query Frame = 0
BLAST of Sed0009978 vs. NCBI nr
Match: XP_038906548.1 (uncharacterized protein LOC120092519 [Benincasa hispida]) HSP 1 Score: 163.7 bits (413), Expect = 1.1e-36 Identity = 94/145 (64.83%), Postives = 105/145 (72.41%), Query Frame = 0
BLAST of Sed0009978 vs. NCBI nr
Match: KAG6576089.1 (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 158.7 bits (400), Expect = 3.5e-35 Identity = 83/128 (64.84%), Postives = 96/128 (75.00%), Query Frame = 0
BLAST of Sed0009978 vs. NCBI nr
Match: XP_011656778.1 (uncharacterized protein LOC105435768 [Cucumis sativus] >KGN46382.1 hypothetical protein Csa_005722 [Cucumis sativus]) HSP 1 Score: 148.3 bits (373), Expect = 4.7e-32 Identity = 88/162 (54.32%), Postives = 106/162 (65.43%), Query Frame = 0
BLAST of Sed0009978 vs. NCBI nr
Match: KAA0039884.1 (uncharacterized protein E6C27_scaffold122G001610 [Cucumis melo var. makuwa]) HSP 1 Score: 146.0 bits (367), Expect = 2.4e-31 Identity = 87/164 (53.05%), Postives = 107/164 (65.24%), Query Frame = 0
BLAST of Sed0009978 vs. ExPASy TrEMBL
Match: A0A0A0KDC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G088100 PE=4 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 2.3e-32 Identity = 88/162 (54.32%), Postives = 106/162 (65.43%), Query Frame = 0
BLAST of Sed0009978 vs. ExPASy TrEMBL
Match: A0A5A7T8V2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G001610 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31 Identity = 87/164 (53.05%), Postives = 107/164 (65.24%), Query Frame = 0
BLAST of Sed0009978 vs. ExPASy TrEMBL
Match: A0A1S3CBD7 (uncharacterized protein LOC103498915 OS=Cucumis melo OX=3656 GN=LOC103498915 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 1.5e-31 Identity = 87/165 (52.73%), Postives = 107/165 (64.85%), Query Frame = 0
BLAST of Sed0009978 vs. ExPASy TrEMBL
Match: A0A2C9UPY2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G037700 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22 Identity = 67/145 (46.21%), Postives = 89/145 (61.38%), Query Frame = 0
BLAST of Sed0009978 vs. ExPASy TrEMBL
Match: A0A6P5SLS2 (uncharacterized protein LOC110757435 OS=Prunus avium OX=42229 GN=LOC110757435 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22 Identity = 71/149 (47.65%), Postives = 88/149 (59.06%), Query Frame = 0
BLAST of Sed0009978 vs. TAIR 10
Match: AT5G44060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 89.0 bits (219), Expect = 3.2e-18 Identity = 58/150 (38.67%), Postives = 80/150 (53.33%), Query Frame = 0
BLAST of Sed0009978 vs. TAIR 10
Match: AT1G04000.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44060.1); Has 62 Blast hits to 62 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 85.9 bits (211), Expect = 2.7e-17 Identity = 57/151 (37.75%), Postives = 75/151 (49.67%), Query Frame = 0
BLAST of Sed0009978 vs. TAIR 10
Match: AT3G23440.1 (embryo sac development arrest 6 ) HSP 1 Score: 64.7 bits (156), Expect = 6.4e-11 Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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