Sed0009912 (gene) Chayote v1

Overview


Name	Sed0009912
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Location	LG07: 5495184 .. 5500396 (-)
RNA-Seq Expression	Sed0009912
Synteny	Sed0009912

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAATATTGTTGGGGAAAATTGTAGATGTGGCGTGTTTAAGCTTCGTTATCGTCTCATCCAAACGACCGGCGACGATACATCCACAGTGATCGTCTCAGAGCTCTGCTCGGCGATCATGGCGTTTCTCTCTTCACCACCGCGCATTCCCTCTCTGGTTCGACCGTTTCACAGAAACCTTCTTTTCTCCCCCATTTCTTCTTCCTTCAGCGCACGACGGAGTTCTAATCGTTCCGGTTCGTTTGGTTCTCAAGCTTCAACGACTTCGGGGTTTTGCTTTAGGGTTCACTGCAGTGACAAAGAACGGGCTGCGCCGACTACTCAGAGCTCCAATCCTAAGGCCGGAGTTCCGATTTACAAACCTAAAACCTACGAGGTGCTGATCTCCGATGCTTCGAATTCTCTCGCTTCTGCTCTTGAAGATGGAAACACCCGCTTGGAGATCGATTTCCCGTAATCTTTCTTTTGAGAATTACTGCTCATTCCTACACTTTGTTAGTTAACCAGTTAGTATTAGAGTTACTTTACTAATCACATCTTAGGACTCCTAATCAGTATTCTTAATCTTGTCTGTTTGTTGAAATAATCTGGCAGGTTTTACTTTGATGTTTTTTTTTTAAAGATAAGAAACAATTTCATTATAAATATGAAATTACAAAAAGGGCTTTTAAGTATCTCGATACCACCGTCTAGGAATGGATCAGTGGTGCCCCGAAGCTCCGATTTCCCGGTTTTCAAAAAAGAAGAAGAAGAGGACTTTAAGTCTAAATTACAAAAGGGATCTCTAACTATTAAATAAGAGTATCATAACTATAATAGGAGATAGTTTAAACCAAGAGAACTCGTTTTAGTATTTGAAAATTGAGGTTCTAAGCGTAGTCCGTATCAAGTTAATTGGTTCAGCGTCGAAATGTGTTTGGTATTTAGTTATTTATTTGATTCTATGAAATTTATTCTGCTGCATCATATCGCTCATTTGTATACTTTATCTGGAATTTTGAATTTATTAGTCCTTTTTGGAGTGATTCTCTCATTATTTTCTGACCCTTGTTTGGTTTTTTTCTTTTCTGGTGGAATTTCCTGCATTCTTCAGTCCCCTGCCTAGCGACATTTCCTCATATAAGGTATTCTTTTTCAACAGCTGCTCATAACATTATATATTTTCTTTCATTCATGAAAGTATTCCCCATTTTTCATACATAGCATATGCACTTGTTCATTTGATTTGAGGATATTTCTAAATATGTCAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAACTTGCCCTGGCTGTTGCCAGGAATCTTCAAGAAAGGAAAGGAACTAGATCTTGCATTGTAAGCAACTGCTTTTATATATTCCCTGAAAATCTTTCTCAAGTTCTTTAATGCAACTGTTATAAACTCAAATGATCATTGCAGGTGTTTCCGGATAAGCCAGAGAAGCGTAGAGCTTCACAGATATTCAAAACAGCTCTTGACTTGGTAACTAGTTTACTCTTTTAAACTTGTATTTATTTTTTGTCCAATGCAGATCGTCCCTGCTTTACCTTCTTTGGCTTGTTGGTAAGGAGAAAAATATTTGGTTAAAAATAAAAGTACCAATAGGAAAGATGCAAACCGAGTGAAATGAAATTATCGCTAAAACTTTATAGTTTGTATTAAATGAGTAGGAGAATGAAATATGGTGGATTTTGAAATAGTACTTCACGAAGAGGGACATCCCAAAGATCAGCATTTTTTAATCCTGTTTCCTCCATAACGGGTCGCTTTATTAGTTTGGGGCATCGTCCATATGGAGAAGCAAAAGTTCAAGGGTATAGCTTGACATAACGTGAAATATGTAGGAGATAAATGAAGATTAAAAAACAACTGAAACCCGGTAAGTAATCTGTGTACTAGCAGTGCTCCTGAAGTTAAAATTGTTTGTGCTACTTGGCTGTTAAATATCTTGAATCTTCTGGCTGCTAAATATTTTATAGCTATATAGTTTATTTTAAAAATAAACAAATAAATTTGGTGGCACAATTGTTGGTAATGAATGATGTGAATTGATCAATGACATACTTGTCCGCGCAATTTACTTCTTGTTTTTCATTTTGTTTATTCATTTGATTATATATCATTCAGGTTAATGGAATAACTTTAAGTTCCTTGGATGATGTCCCTGCTGGACCAGTCGGGTCTTTCTTCAGATCTGTTCGGAACACCCTTGATTTTGATTTTGAAGATGAAAATGCAGGTTGGTTGTACATACATGTATTTCTCATGATGTCTTGCATTCTTTTCCATTTTTTCCTTCTGTGACTATGAGTGTTGTATGTTGCCCTTTATTTCACTACTAAATGCATTTTGCAAATATATGTTATATCTTATGTCACCCTAACCATTATGGCAAGACTGGAATTTGCTTCATTTGAAAATAAAGTTGATACAGAAACGGATAATGATACATGAAAAATAACAAAAAGGCAAATGGGGGATAAAAGAAAAGATGAAATACGACATAAAATGTGATTGAACTTGTTTCTTTTTATGATGAAACCAGTTGAAGTTCAAGAACCTGCCTCTTCCTATGTATTTCACTTCACTTTTTGTCAATATCTTGCCGAAGATCCACACTGAAAAGGTGAGGAGGTCTTACCTCCTTATAATAAGGTGTACTCTTCTCATTACTAATTGATTTTGAGATGGAATTCCATGTTATTTAATATGGTATTAGAGCCTATTAAACTCGAGCAGATGTTTGATCCAACAAAAAAAATGAATTGAGATTCGATCTAAAATTGGTGAACTCAAATAGACACCATCTTGAAGGGGGTATAAATTATAATGAGGATACCACGTGAGAAGGTGAAGAGACCTTACCACTCCTCTCATTGTCAATTGGTTCTTAGATAGAACAACATGTTATCGAATATATCTACTTCAATTTTTTTCTCTAACCCTATGTTATATGTTTTTTTATTGTAATCATCTTTTATTTCTTACATGCTCTTTCCAAGTTAATGATTTCTCACTCTTTGCAATCCATCTGAATTGCAGATCGTTGGACATCTAGTGACCCTCCCTCACTGTACATATTTATTAATTGCAGTACGCGTGAGCTTGCTTTGATAGAGAAGTATGTGGTATGATCTCTATACTAATTGCAAGATAGCACCTTGTTGAAAACTTTAATCCATGGCATACATTGATATGCTTCTGATTGGAACTTTGTTTTCTTCCCATAATGGTTCTAGGGCTATTGTTGATGTTGTCTTTTTTTTTTAAACTTCGTGCGCACCTTTTAATGTGGCATCATCTGGTCAGTTTTTATAGATATTACCATTGTATGAGCACCATCATGCCATCCTTCATGTTGGTGTCAATAGTTATGTAATGCCTTTTGTCCTTGCACTTTGAGCAACTTACATATTGATGGTGCGGAAGTACTAAATAAGATCACCAACGAGACTAATAGCTCAACTAGCATTAGTGTGGACATGAGTAATAGGACATGTCTTCGAATCCCATACCCCCAATTGTTTTGAACACATAAAGAACTTAATAAGATCTATTCGTGACTTTCTAAGTGATATTTTTATGCAAAATGAGTTGTTTTTAGTTAATTTCATTTGGCTTGGTCCATTTGGTTTTTGCTGAACCATAAGGTGACTCATTTTGGGATGTGCAGGAAACTTTTGCCTCGTCAATCCCCACTCTTTTGTTTAATCTAGAACTTGAAACCTTGCGGTAATGGTTCTTCTCCTCATCCATAGCTTATAGATATTGTCATATTTGCTATTACTGATCAGAAGTTAGAAAACTTACAGTGCAGACTTGGGCATACTGGGATTCCCTCCTAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCAGTGTTCTACATTCGAATCAGAGAGTATTCTAAGGTCTTGGATCTCATCTTGGAACCCATTTTAATTATATTTTTGTACATTCTTTTTTTACTAAATTCTCTTCTCTTGGTTCTCTTTGGGGGGGAGGAATATCAAGACAGTAGCAATAGCACCTTATATTGTCAATTACAGTGGAGCATTGTTTCGTCAATACCCGGGTGCGTATACTATTTAATCGAACTCCCTGCTGGAGAATTTTGGATGTCTATCTTGGTCTGAAAATGGTTCACGCCTTGCGCTTTTGATCAATCTTCATATCTACATCTATTCATCCTTCATAGTACTTGCAGGGCCTTGGCAAGTGATGCTAAAACAATCAGATAATTCATATGCTTGCGTTGCAGAGAGTGAGACAAGGTTCACCCTTGGGGAAGTATGTTAAAAAACTGAAATACTTTTAGCTGGTAAACATTTGTGTGGTGATTTTGGACTAACTTTTGCTTGTAATTTAGACAAAAGATGAACTGCTAAGGGTCCTTGGACTACAGGAGGAACAAGGAAGCTCATTAGATTTTCTTCGCAGGGGCTACAAGGTTTCCTCTTTACATCCATGCTATATCTTTCTTTCTCCATGGTGTGAAGTATTAATGGTGCTCAAGAAAAGAGGGAAAAAGTAAAATGTATAGGATATCTTGTTGTCCCGTGAGAACAGTTGATGTGCGCGCAAGCTGACTCAAACACCTATTGATATCAAACAAGAAAGTCTACCAACCTGCCTACAGTTTAGAGAGAAAAGTGCACCATATTTTGCTGCTTATGTTTTTGAATCAGTTACACATGCATTTTTTAGGAAATAATTCCTATGAAATTAACACACTTCATATCTAATAAGTGGGTAGGAAACTTTGTTGGAGATGGAATTGTAACTCATGAAATCTACTCTACTTTGCAGTCTGCCACTTGGTGGGAAGAAGATGCTGATTCTGAACTATCTTCGGCATGGCGCAGTTGAGCAGCTCGAGTTTCGATTTTCTCCAAAATAACTTACATTTTCGGGAAATGCTACATCGATGAGATTGAATACGAGATACCAACCATATTCTCTTTGGACAGTGTATGCAAGGAAATTCTATTTTTATATCTCTTTTCAAACCATCAGCTTCAGAAAAGTAACATTCCAAGTCATTCTCCTCTGGAATTCAAGGTAAAGTAATCTTGTACATTTTATTAGTCACGATGAATTACGACGTCTTTACGTTTAATTTCCATAATATTTTTTGGAGTGACAATTATGTAAACATTCTGTTTGTCTAATTTTTGTATTATTTAATAGTGTCTATG

mRNA sequence

ATGCAAAATATTGTTGGGGAAAATTGTAGATGTGGCGTGTTTAAGCTTCGTTATCGTCTCATCCAAACGACCGGCGACGATACATCCACAGTGATCGTCTCAGAGCTCTGCTCGGCGATCATGGCGTTTCTCTCTTCACCACCGCGCATTCCCTCTCTGGTTCGACCGTTTCACAGAAACCTTCTTTTCTCCCCCATTTCTTCTTCCTTCAGCGCACGACGGAGTTCTAATCGTTCCGGTTCGTTTGGTTCTCAAGCTTCAACGACTTCGGGGTTTTGCTTTAGGGTTCACTGCAGTGACAAAGAACGGGCTGCGCCGACTACTCAGAGCTCCAATCCTAAGGCCGGAGTTCCGATTTACAAACCTAAAACCTACGAGGTGCTGATCTCCGATGCTTCGAATTCTCTCGCTTCTGCTCTTGAAGATGGAAACACCCGCTTGGAGATCGATTTCCCTCCCCTGCCTAGCGACATTTCCTCATATAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAACTTGCCCTGGCTGTTGCCAGGAATCTTCAAGAAAGGAAAGGAACTAGATCTTGCATTGTGTTTCCGGATAAGCCAGAGAAGCGTAGAGCTTCACAGATATTCAAAACAGCTCTTGACTTGGTTAATGGAATAACTTTAAGTTCCTTGGATGATGTCCCTGCTGGACCAGTCGGGTCTTTCTTCAGATCTGTTCGGAACACCCTTGATTTTGATTTTGAAGATGAAAATGCAGATCGTTGGACATCTAGTGACCCTCCCTCACTGTACATATTTATTAATTGCAGTACGCGTGAGCTTGCTTTGATAGAGAAGTATGTGGAAACTTTTGCCTCGTCAATCCCCACTCTTTTGTTTAATCTAGAACTTGAAACCTTGCGTGCAGACTTGGGCATACTGGGATTCCCTCCTAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCAGTGTTCTACATTCGAATCAGAGAGTATTCTAAGACAGTAGCAATAGCACCTTATATTGTCAATTACAGTGGAGCATTGTTTCGTCAATACCCGGGGCCTTGGCAAGTGATGCTAAAACAATCAGATAATTCATATGCTTGCGTTGCAGAGAGTGAGACAAGGTTCACCCTTGGGGAAACAAAAGATGAACTGCTAAGGGTCCTTGGACTACAGGAGGAACAAGGAAGCTCATTAGATTTTCTTCGCAGGGGCTACAAGTCTGCCACTTGGTGGGAAGAAGATGCTGATTCTGAACTATCTTCGGCATGGCGCAGTTGAGCAGCTCGAGTTTCGATTTTCTCCAAAATAACTTACATTTTCGGGAAATGCTACATCGATGAGATTGAATACGAGATACCAACCATATTCTCTTTGGACAGTGTATGCAAGGAAATTCTATTTTTATATCTCTTTTCAAACCATCAGCTTCAGAAAAGTAACATTCCAAGTCATTCTCCTCTGGAATTCAAGGTAAAGTAATCTTGTACATTTTATTAGTCACGATGAATTACGACGTCTTTACGTTTAATTTCCATAATATTTTTTGGAGTGACAATTATGTAAACATTCTGTTTGTCTAATTTTTGTATTATTTAATAGTGTCTATG

Coding sequence (CDS)

ATGCAAAATATTGTTGGGGAAAATTGTAGATGTGGCGTGTTTAAGCTTCGTTATCGTCTCATCCAAACGACCGGCGACGATACATCCACAGTGATCGTCTCAGAGCTCTGCTCGGCGATCATGGCGTTTCTCTCTTCACCACCGCGCATTCCCTCTCTGGTTCGACCGTTTCACAGAAACCTTCTTTTCTCCCCCATTTCTTCTTCCTTCAGCGCACGACGGAGTTCTAATCGTTCCGGTTCGTTTGGTTCTCAAGCTTCAACGACTTCGGGGTTTTGCTTTAGGGTTCACTGCAGTGACAAAGAACGGGCTGCGCCGACTACTCAGAGCTCCAATCCTAAGGCCGGAGTTCCGATTTACAAACCTAAAACCTACGAGGTGCTGATCTCCGATGCTTCGAATTCTCTCGCTTCTGCTCTTGAAGATGGAAACACCCGCTTGGAGATCGATTTCCCTCCCCTGCCTAGCGACATTTCCTCATATAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAACTTGCCCTGGCTGTTGCCAGGAATCTTCAAGAAAGGAAAGGAACTAGATCTTGCATTGTGTTTCCGGATAAGCCAGAGAAGCGTAGAGCTTCACAGATATTCAAAACAGCTCTTGACTTGGTTAATGGAATAACTTTAAGTTCCTTGGATGATGTCCCTGCTGGACCAGTCGGGTCTTTCTTCAGATCTGTTCGGAACACCCTTGATTTTGATTTTGAAGATGAAAATGCAGATCGTTGGACATCTAGTGACCCTCCCTCACTGTACATATTTATTAATTGCAGTACGCGTGAGCTTGCTTTGATAGAGAAGTATGTGGAAACTTTTGCCTCGTCAATCCCCACTCTTTTGTTTAATCTAGAACTTGAAACCTTGCGTGCAGACTTGGGCATACTGGGATTCCCTCCTAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCAGTGTTCTACATTCGAATCAGAGAGTATTCTAAGACAGTAGCAATAGCACCTTATATTGTCAATTACAGTGGAGCATTGTTTCGTCAATACCCGGGGCCTTGGCAAGTGATGCTAAAACAATCAGATAATTCATATGCTTGCGTTGCAGAGAGTGAGACAAGGTTCACCCTTGGGGAAACAAAAGATGAACTGCTAAGGGTCCTTGGACTACAGGAGGAACAAGGAAGCTCATTAGATTTTCTTCGCAGGGGCTACAAGTCTGCCACTTGGTGGGAAGAAGATGCTGATTCTGAACTATCTTCGGCATGGCGCAGTTGA

Protein sequence

MQNIVGENCRCGVFKLRYRLIQTTGDDTSTVIVSELCSAIMAFLSSPPRIPSLVRPFHRNLLFSPISSSFSARRSSNRSGSFGSQASTTSGFCFRVHCSDKERAAPTTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDISSYKGSSDEFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGITLSSLDDVPAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEKYVETFASSIPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAIAPYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLDFLRRGYKSATWWEEDADSELSSAWRS

Homology

[Close]

BLAST of Sed0009912 vs. NCBI nr
Match: XP_022992481.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 699.9 bits (1805), Expect = 1.4e-197
Identity = 345/390 (88.46%), Postives = 369/390 (94.62%), Query Frame = 0


Query: 39  AIMAFLSSPPRIPSLVRPFHRNLLFSPISSSFSARRSSNRSGSFGSQASTTSGFCFRVHC 98
           AIMAFLSSPP IPSLVRPFH N LFSPISSSFSA R S RS  FG+Q   TSGFCFR+HC
Sbjct: 2   AIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIHC 61

Query: 99  SDKERAAPTTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDI 158
           SDKERAAP T+SS+PKAGVPIYKPKTYEVL+SDA+NSLA ALEDG  RLEIDFPPLPS+I
Sbjct: 62  SDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNI 121

Query: 159 SSYKGSSDEFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGI 218
           SSYKGSSDEFIDANIQLALAVARNLQE++GTRSCIVFPDKP+K RASQ+FKTALD ++GI
Sbjct: 122 SSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGI 181

Query: 219 TLSSLDDVPAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEK 278
           T+SSLDD+PAGPV SFFRS+RNTLDFDFEDENA RWTSS+PPSLYIFINCSTRELA+IEK
Sbjct: 182 TISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEK 241

Query: 279 YVETFASSIPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAI 338
           YVETFASSIPTL+FNLELETLRADLG+LGFPPKDLHYRFLSQFIPVFYIRIREYSKTV I
Sbjct: 242 YVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 301

Query: 339 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 398
           APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 302 APYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 361

Query: 399 SSLDFLRRGYKSATWWEEDADSELSSAWRS 429
           SSL+FLRRGYK+ATWWEED DSE+SSAWRS
Sbjct: 362 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Sed0009912 vs. NCBI nr
Match: XP_022954402.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 699.1 bits (1803), Expect = 2.3e-197
Identity = 345/390 (88.46%), Postives = 369/390 (94.62%), Query Frame = 0


Query: 39  AIMAFLSSPPRIPSLVRPFHRNLLFSPISSSFSARRSSNRSGSFGSQASTTSGFCFRVHC 98
           AIMAFLSSPP IPSLVRPFH N LFSPI+SSFSA R S RS  FG+Q   TSGFCFR+HC
Sbjct: 2   AIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHC 61

Query: 99  SDKERAAPTTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDI 158
           SDKERAAP T+SS+PKAGVPIYKPKTYEVL+SDA+NSLA ALEDG  RLEIDFPPLPS+I
Sbjct: 62  SDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNI 121

Query: 159 SSYKGSSDEFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGI 218
           SSYKGSSDEFIDANIQLALAVARNLQE++GTRSCIVFPDKP+K RASQ+FKTALD ++GI
Sbjct: 122 SSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGI 181

Query: 219 TLSSLDDVPAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEK 278
           T+SSLDDVPAGPV SFFRS+RNTLDFDFEDENA RWTSS+PPSLYIFINCSTRELA+IEK
Sbjct: 182 TISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEK 241

Query: 279 YVETFASSIPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAI 338
           YVETFASSIPTL+FNLELETLRADLG+LGFPPKDLHYRFLSQFIPVFYIRIREYSKTV I
Sbjct: 242 YVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 301

Query: 339 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 398
           APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 302 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 361

Query: 399 SSLDFLRRGYKSATWWEEDADSELSSAWRS 429
           SSL+FLRRGYK+ATWWEED DSE+SSAWRS
Sbjct: 362 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Sed0009912 vs. NCBI nr
Match: KAG6575630.1 (Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 697.2 bits (1798), Expect = 8.8e-197
Identity = 345/390 (88.46%), Postives = 368/390 (94.36%), Query Frame = 0


Query: 39  AIMAFLSSPPRIPSLVRPFHRNLLFSPISSSFSARRSSNRSGSFGSQASTTSGFCFRVHC 98
           AIMAFLSSPP IPSLVRP H N LFSPISSSFSA R S RS  FG+Q   TSGFCFR+HC
Sbjct: 2   AIMAFLSSPPHIPSLVRPCHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIHC 61

Query: 99  SDKERAAPTTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDI 158
           SDKERAAP T+SS+PKAGVPIYKPKTYEVL+SDA+NSLA ALEDG  RLEIDFPPLPS+I
Sbjct: 62  SDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNI 121

Query: 159 SSYKGSSDEFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGI 218
           SSYKGSSDEFIDANIQLALAVARNLQE++GTRSCIVFPDKP+K RASQ+FKTALD ++GI
Sbjct: 122 SSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGI 181

Query: 219 TLSSLDDVPAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEK 278
           T+SSLDDVPAGPV SFFRS+RNTLDFDFEDENA RWTSS+PPSLYIFINCSTRELA+IEK
Sbjct: 182 TISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEK 241

Query: 279 YVETFASSIPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAI 338
           YVETFASSIPTL+FNLELETLRADLG+LGFPPKDLHYRFLSQFIPVFYIRIREYSKTV I
Sbjct: 242 YVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 301

Query: 339 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 398
           APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 302 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 361

Query: 399 SSLDFLRRGYKSATWWEEDADSELSSAWRS 429
           SSL+FLRRGYK+ATWWEED DSE+SSAWRS
Sbjct: 362 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Sed0009912 vs. NCBI nr
Match: XP_038900014.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 696.8 bits (1797), Expect = 1.2e-196
Identity = 345/390 (88.46%), Postives = 366/390 (93.85%), Query Frame = 0


Query: 39  AIMAFLSSPPRIPSLVRPFHRNLLFSPISSSFSARRSSNRSGSFGSQASTTSGFCFRVHC 98
           AIMAF+SSPP+IPSL R FH N LFSPISSSF A R S RS  FG+Q   TSGFCFR+HC
Sbjct: 2   AIMAFVSSPPQIPSLSRSFHSNFLFSPISSSFCALRRSTRSSLFGAQTLATSGFCFRIHC 61

Query: 99  SDKERAAPTTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDI 158
            DKER +P TQSS+PKAGVPIYKPKTYEVL+SDA+NSLA ALEDG  RLEIDFPPLPS+I
Sbjct: 62  RDKERTSPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKIRLEIDFPPLPSNI 121

Query: 159 SSYKGSSDEFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGI 218
           SSYKGSSDEFIDANIQLALAVARNLQE++GTRSCIVFPDKPEKRRASQ+FKTALD ++GI
Sbjct: 122 SSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASQLFKTALDSIDGI 181

Query: 219 TLSSLDDVPAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEK 278
           T+SSLDDVPAGPV SFFRSVRNTLDFDFEDEN+ RWTSSDPPSLYIFINCSTREL LIEK
Sbjct: 182 TVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENSGRWTSSDPPSLYIFINCSTRELGLIEK 241

Query: 279 YVETFASSIPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAI 338
           YVETFASSIPTLLFNLELETLRADLG+LGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA+
Sbjct: 242 YVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAV 301

Query: 339 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 398
           APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 302 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 361

Query: 399 SSLDFLRRGYKSATWWEEDADSELSSAWRS 429
           SSL+FLRRGYK+ATWWEED DSE+SSAWRS
Sbjct: 362 SSLEFLRRGYKAATWWEEDVDSEVSSAWRS 391

[Close]

BLAST of Sed0009912 vs. NCBI nr
Match: XP_023547388.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 696.4 bits (1796), Expect = 1.5e-196
Identity = 343/390 (87.95%), Postives = 369/390 (94.62%), Query Frame = 0


Query: 39  AIMAFLSSPPRIPSLVRPFHRNLLFSPISSSFSARRSSNRSGSFGSQASTTSGFCFRVHC 98
           AIMAFLSSPP IPSLVRPFH N LFSPISSSFSA R S RS  FG+Q   TSGFCFR+HC
Sbjct: 2   AIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIHC 61

Query: 99  SDKERAAPTTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDI 158
           SDKERAAP T+SS+PKAGVPIYKPKTYEVL+SDA+NSLA ALEDG  RLEIDFPPLPS+I
Sbjct: 62  SDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNI 121

Query: 159 SSYKGSSDEFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGI 218
           SSYKGSSDEFIDANIQL+LAVARNLQE++GTRSCIVFPDKP+K RASQ+FKTALD ++GI
Sbjct: 122 SSYKGSSDEFIDANIQLSLAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGI 181

Query: 219 TLSSLDDVPAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEK 278
           T+SSLDDVPAGPV SFFRS+RNTLDFDFEDENA RWTSS+PPSLYIFINCSTRELA+IEK
Sbjct: 182 TISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEK 241

Query: 279 YVETFASSIPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAI 338
           YVETFASSIPTL+FNLELETLRADLG+LGFPPKDLHYRFLSQFIPVFYIRIREYSKTV I
Sbjct: 242 YVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 301

Query: 339 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 398
           APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETK+ELLRVLGLQEEQG
Sbjct: 302 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKEELLRVLGLQEEQG 361

Query: 399 SSLDFLRRGYKSATWWEEDADSELSSAWRS 429
           SSL+FLRRGYK++TWWEED DSE+SSAWRS
Sbjct: 362 SSLEFLRRGYKASTWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Sed0009912 vs. ExPASy Swiss-Prot
Match: Q8H0W0 (Protein LPA3 OS=Arabidopsis thaliana OX=3702 GN=LPA3 PE=1 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 1.1e-144
Identity = 245/322 (76.09%), Postives = 285/322 (88.51%), Query Frame = 0


Query: 107 TTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDISSYKGSSD 166
           T+ +S+P+ GVP+YKPK+YEVL +DA+NSLA AL+D  +RLEIDFPPLPS ISSYKGSSD
Sbjct: 37  TSSNSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPLPSSISSYKGSSD 96

Query: 167 EFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGITLSSLDDV 226
           +FIDANIQLA+ V R LQE+  TR+CIVFPDKPEKRRASQ FK A D V+GI++ SLDD+
Sbjct: 97  DFIDANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVDGISIGSLDDI 156

Query: 227 PAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEKYVETFASS 286
           P   V +FFRS+R+TLDFDFEDEN   W   +PP+LYIFINCSTREL+ IEK+VETFASS
Sbjct: 157 PGTSVTNFFRSIRSTLDFDFEDENEGTWEPKEPPTLYIFINCSTRELSFIEKFVETFASS 216

Query: 287 IPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAIAPYIVNYS 346
            P LLFNLEL+TLRADLG+LGFPPKDLHYRFLSQFIPVFYIR REYSKTVA+AP+++NY+
Sbjct: 217 TPALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSKTVAVAPFVLNYN 276

Query: 347 GALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLDFLRR 406
           GALFRQYPGPWQVMLKQ+D S+ACVAES TRFTLGETK+ELL+VLGLQEE+GSSL+FLRR
Sbjct: 277 GALFRQYPGPWQVMLKQTDGSFACVAESPTRFTLGETKEELLQVLGLQEEKGSSLEFLRR 336

Query: 407 GYKSATWWEEDADSELSSAWRS 429
           GYKSATWWEED + E SS WR+
Sbjct: 337 GYKSATWWEEDVELEASSNWRN 358

[Close]

BLAST of Sed0009912 vs. ExPASy TrEMBL
Match: A0A6J1JTN7 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488800 PE=4 SV=1)

HSP 1 Score: 699.9 bits (1805), Expect = 6.6e-198
Identity = 345/390 (88.46%), Postives = 369/390 (94.62%), Query Frame = 0


Query: 39  AIMAFLSSPPRIPSLVRPFHRNLLFSPISSSFSARRSSNRSGSFGSQASTTSGFCFRVHC 98
           AIMAFLSSPP IPSLVRPFH N LFSPISSSFSA R S RS  FG+Q   TSGFCFR+HC
Sbjct: 2   AIMAFLSSPPHIPSLVRPFHSNFLFSPISSSFSALRRSTRSSLFGAQTLATSGFCFRIHC 61

Query: 99  SDKERAAPTTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDI 158
           SDKERAAP T+SS+PKAGVPIYKPKTYEVL+SDA+NSLA ALEDG  RLEIDFPPLPS+I
Sbjct: 62  SDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNI 121

Query: 159 SSYKGSSDEFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGI 218
           SSYKGSSDEFIDANIQLALAVARNLQE++GTRSCIVFPDKP+K RASQ+FKTALD ++GI
Sbjct: 122 SSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGI 181

Query: 219 TLSSLDDVPAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEK 278
           T+SSLDD+PAGPV SFFRS+RNTLDFDFEDENA RWTSS+PPSLYIFINCSTRELA+IEK
Sbjct: 182 TISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEK 241

Query: 279 YVETFASSIPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAI 338
           YVETFASSIPTL+FNLELETLRADLG+LGFPPKDLHYRFLSQFIPVFYIRIREYSKTV I
Sbjct: 242 YVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 301

Query: 339 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 398
           APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 302 APYIVNYSGALFRQYPGPWQVMLKQTDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 361

Query: 399 SSLDFLRRGYKSATWWEEDADSELSSAWRS 429
           SSL+FLRRGYK+ATWWEED DSE+SSAWRS
Sbjct: 362 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Sed0009912 vs. ExPASy TrEMBL
Match: A0A6J1GQW6 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456648 PE=4 SV=1)

HSP 1 Score: 699.1 bits (1803), Expect = 1.1e-197
Identity = 345/390 (88.46%), Postives = 369/390 (94.62%), Query Frame = 0


Query: 39  AIMAFLSSPPRIPSLVRPFHRNLLFSPISSSFSARRSSNRSGSFGSQASTTSGFCFRVHC 98
           AIMAFLSSPP IPSLVRPFH N LFSPI+SSFSA R S RS  FG+Q   TSGFCFR+HC
Sbjct: 2   AIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHC 61

Query: 99  SDKERAAPTTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDI 158
           SDKERAAP T+SS+PKAGVPIYKPKTYEVL+SDA+NSLA ALEDG  RLEIDFPPLPS+I
Sbjct: 62  SDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNI 121

Query: 159 SSYKGSSDEFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGI 218
           SSYKGSSDEFIDANIQLALAVARNLQE++GTRSCIVFPDKP+K RASQ+FKTALD ++GI
Sbjct: 122 SSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGI 181

Query: 219 TLSSLDDVPAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEK 278
           T+SSLDDVPAGPV SFFRS+RNTLDFDFEDENA RWTSS+PPSLYIFINCSTRELA+IEK
Sbjct: 182 TISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEK 241

Query: 279 YVETFASSIPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAI 338
           YVETFASSIPTL+FNLELETLRADLG+LGFPPKDLHYRFLSQFIPVFYIRIREYSKTV I
Sbjct: 242 YVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPI 301

Query: 339 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 398
           APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 302 APYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQG 361

Query: 399 SSLDFLRRGYKSATWWEEDADSELSSAWRS 429
           SSL+FLRRGYK+ATWWEED DSE+SSAWRS
Sbjct: 362 SSLEFLRRGYKAATWWEEDNDSEVSSAWRS 391

[Close]

BLAST of Sed0009912 vs. ExPASy TrEMBL
Match: A0A5A7UU42 (Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001640 PE=4 SV=1)

HSP 1 Score: 687.2 bits (1772), Expect = 4.4e-194
Identity = 342/389 (87.92%), Postives = 362/389 (93.06%), Query Frame = 0


Query: 40  IMAFLSSPPRIPSLVRPFHRNLLFSPISSSFSARRSSNRSGSFGSQASTTSGFCFRVHCS 99
           IMAFLSSPP IPSL RPFH N LFSPISSS    R S  S  FG+Q    SGFCFR+HC 
Sbjct: 3   IMAFLSSPPYIPSLSRPFHSNFLFSPISSSL---RRSTPSSLFGAQTLAASGFCFRIHCR 62

Query: 100 DKERAAPTTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDIS 159
           DKERAAP TQSS+PKAGVPIYKPKTYEVL+SDA+NSLA ALEDG  RLEIDFPPLPS+IS
Sbjct: 63  DKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNIS 122

Query: 160 SYKGSSDEFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGIT 219
           SYKGSSDEFIDANIQLALAVARNLQE++GTRSCIVFPDKPEKRRAS++FKTA+D ++GIT
Sbjct: 123 SYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTAIDSIDGIT 182

Query: 220 LSSLDDVPAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEKY 279
           +SSLDDVPAGPV SFFRSVRNTLDFDFED+NA RWTSSDPPSLYIFINCSTREL LIEKY
Sbjct: 183 VSSLDDVPAGPVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKY 242

Query: 280 VETFASSIPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAIA 339
           VETFASSIPTLLFNLELETLRADLG+LGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA+A
Sbjct: 243 VETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVA 302

Query: 340 PYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGS 399
           PYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGS
Sbjct: 303 PYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGS 362

Query: 400 SLDFLRRGYKSATWWEEDADSELSSAWRS 429
           SL+FLRRGYK+ATWWEED DSE+SSAWRS
Sbjct: 363 SLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of Sed0009912 vs. ExPASy TrEMBL
Match: A0A1S3CFB8 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499841 PE=4 SV=1)

HSP 1 Score: 683.3 bits (1762), Expect = 6.4e-193
Identity = 340/389 (87.40%), Postives = 361/389 (92.80%), Query Frame = 0


Query: 40  IMAFLSSPPRIPSLVRPFHRNLLFSPISSSFSARRSSNRSGSFGSQASTTSGFCFRVHCS 99
           IMAF+SSPP IPSL RPF  N LFSPISSS    R S  S  FG+Q    SGFCFR+HC 
Sbjct: 3   IMAFISSPPYIPSLSRPFQSNFLFSPISSSL---RRSTPSSLFGAQTLAASGFCFRIHCR 62

Query: 100 DKERAAPTTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDIS 159
           DKERAAP TQSS+PKAGVPIYKPKTYEVL+SDA+NSLA ALEDG  RLEIDFPPLPS+IS
Sbjct: 63  DKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNIS 122

Query: 160 SYKGSSDEFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGIT 219
           SYKGSSDEFIDANIQLALAVARNLQE++GTRSCIVFPDKPEKRRAS++FKTA+D ++GIT
Sbjct: 123 SYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRASELFKTAIDSIDGIT 182

Query: 220 LSSLDDVPAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEKY 279
           +SSLDDVPAGPV SFFRSVRNTLDFDFED+NA RWTSSDPPSLYIFINCSTREL LIEKY
Sbjct: 183 VSSLDDVPAGPVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEKY 242

Query: 280 VETFASSIPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAIA 339
           VETFASSIPTLLFNLELETLRADLG+LGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA+A
Sbjct: 243 VETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAVA 302

Query: 340 PYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGS 399
           PYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGS
Sbjct: 303 PYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGS 362

Query: 400 SLDFLRRGYKSATWWEEDADSELSSAWRS 429
           SL+FLRRGYK+ATWWEED DSE+SSAWRS
Sbjct: 363 SLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of Sed0009912 vs. ExPASy TrEMBL
Match: A0A0A0KA03 (DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G431980 PE=4 SV=1)

HSP 1 Score: 677.6 bits (1747), Expect = 3.5e-191
Identity = 339/390 (86.92%), Postives = 358/390 (91.79%), Query Frame = 0


Query: 39  AIMAFLSSPPRIPSLVRPFHRNLLFSPISSSFSARRSSNRSGSFGSQASTTSGFCFRVHC 98
           AIMAFLSSPP IPSL  PFH N LFSPISSS    R S RS  FG+Q    SGFCFR+HC
Sbjct: 2   AIMAFLSSPPHIPSLSPPFHTNFLFSPISSSL---RRSTRSSLFGAQTLAASGFCFRIHC 61

Query: 99  SDKERAAPTTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDI 158
            DKERAAP TQ S+PKAGVPIYKPKTYEVL+SDA+NSLA ALEDG  RLEIDFPPLPS+I
Sbjct: 62  LDKERAAPVTQRSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNI 121

Query: 159 SSYKGSSDEFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGI 218
           SSYKGSSD+FIDANIQLALAVARNLQE++G RSCIVFPDKPEKRRASQ+FKTALD ++GI
Sbjct: 122 SSYKGSSDDFIDANIQLALAVARNLQEKRGIRSCIVFPDKPEKRRASQLFKTALDSIDGI 181

Query: 219 TLSSLDDVPAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEK 278
           T+SSLDDVPAG V SFFRSVRNTLDFDFED+NA RWTSSDPPSLYIFINCSTREL LIEK
Sbjct: 182 TVSSLDDVPAGAVTSFFRSVRNTLDFDFEDDNAGRWTSSDPPSLYIFINCSTRELGLIEK 241

Query: 279 YVETFASSIPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAI 338
           YVETFASSIP LLFNLELETLRADLG+LGFPPKDLHYRFLSQFIPVFYIRIREYSKTVA+
Sbjct: 242 YVETFASSIPALLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAV 301

Query: 339 APYIVNYSGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 398
           APYIVNYSGALFRQY GPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG
Sbjct: 302 APYIVNYSGALFRQYAGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQG 361

Query: 399 SSLDFLRRGYKSATWWEEDADSELSSAWRS 429
           SSL+FLRRGYK+ATWWEED DSE+SSAWRS
Sbjct: 362 SSLEFLRRGYKAATWWEEDVDSEVSSAWRS 388

[Close]

BLAST of Sed0009912 vs. TAIR 10
Match: AT1G73060.1 (Low PSII Accumulation 3 )

HSP 1 Score: 514.6 bits (1324), Expect = 7.6e-146
Identity = 245/322 (76.09%), Postives = 285/322 (88.51%), Query Frame = 0


Query: 107 TTQSSNPKAGVPIYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDISSYKGSSD 166
           T+ +S+P+ GVP+YKPK+YEVL +DA+NSLA AL+D  +RLEIDFPPLPS ISSYKGSSD
Sbjct: 37  TSSNSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPLPSSISSYKGSSD 96

Query: 167 EFIDANIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGITLSSLDDV 226
           +FIDANIQLA+ V R LQE+  TR+CIVFPDKPEKRRASQ FK A D V+GI++ SLDD+
Sbjct: 97  DFIDANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVDGISIGSLDDI 156

Query: 227 PAGPVGSFFRSVRNTLDFDFEDENADRWTSSDPPSLYIFINCSTRELALIEKYVETFASS 286
           P   V +FFRS+R+TLDFDFEDEN   W   +PP+LYIFINCSTREL+ IEK+VETFASS
Sbjct: 157 PGTSVTNFFRSIRSTLDFDFEDENEGTWEPKEPPTLYIFINCSTRELSFIEKFVETFASS 216

Query: 287 IPTLLFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKTVAIAPYIVNYS 346
            P LLFNLEL+TLRADLG+LGFPPKDLHYRFLSQFIPVFYIR REYSKTVA+AP+++NY+
Sbjct: 217 TPALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSKTVAVAPFVLNYN 276

Query: 347 GALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLDFLRR 406
           GALFRQYPGPWQVMLKQ+D S+ACVAES TRFTLGETK+ELL+VLGLQEE+GSSL+FLRR
Sbjct: 277 GALFRQYPGPWQVMLKQTDGSFACVAESPTRFTLGETKEELLQVLGLQEEKGSSLEFLRR 336

Query: 407 GYKSATWWEEDADSELSSAWRS 429
           GYKSATWWEED + E SS WR+
Sbjct: 337 GYKSATWWEEDVELEASSNWRN 358

[Close]

BLAST of Sed0009912 vs. TAIR 10
Match: AT5G48790.1 (Domain of unknown function (DUF1995) )

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-10
Identity = 93/349 (26.65%), Postives = 147/349 (42.12%), Query Frame = 0


Query: 66  ISSSFSARRSSNRSGSFGSQASTTSGFCFRVHCSD----------KERAAPTTQSSNPKA 125
           +S SFS   + + +   G+ AS +      +H  +          K RA   +   N   
Sbjct: 1   MSPSFSIATTVSPASLAGTLASNSKNVLCSLHSKNNDITKTNRNLKFRACSVSGGYNNNT 60

Query: 126 GVP-IYKPKTYEVLISDASNSLASALEDGNTRLEIDFPPLPSDISSYKGSSD---EFIDA 185
            V  +  P+ Y  LI+ A  ++  AL+D    +EI+FP   S ++S  G  +   E  ++
Sbjct: 61  SVDNVPFPRDYVELINQAKEAVEMALKDEKQLMEIEFP--TSGLASVPGDGEGATEMTES 120

Query: 186 NIQLALAVARNLQERKGTRSCIVFPDKPEKRRASQIFKTALDLVNGITLSSLDDVPAGPV 245
              +     R L   K   + I FP+  E        K A   V G T   LD +     
Sbjct: 121 INMIREFCDRLLAPEKARSTRIFFPEANE-------VKFAQKTVFGGTYFKLDYLTK--- 180

Query: 246 GSFFRSVRNTLDFDFED--ENADRWTSSDPPSLYIFINCSTRELALIEK-YVETFASSIP 305
            S F       DF F +  + ADR    D   L  +   +  E+ ++E+ Y E   ++  
Sbjct: 181 PSLFE------DFGFFERVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTDR 240

Query: 306 TL-LFNLELETLRADLGILGFPPKDLHYRFLSQFIPVFYIRIREYSKT----VAIAPYIV 365
            L +FN EL+ +R+     G+ PK             FY ++   +KT    +    YI 
Sbjct: 241 KLIIFNGELDRIRS-----GYYPK------------FFYPKLAALTKTLLPKMETVYYIH 300

Query: 366 NY----SGALFRQYPGPWQVMLKQSDNSYACVAESETRFTLGETKDELL 389
           N+     G LFR YPGPWQV L+++ N Y CV + E+  +L E   ++L
Sbjct: 301 NFKGQKGGVLFRCYPGPWQV-LRRTRNKYICVHQQESMPSLKEVALDIL 313

The following BLAST results are available for this feature:

BLAST of Sed0009912 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992481.1	1.4e-197	88.46	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]	[more]
XP_022954402.1	2.3e-197	88.46	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]	[more]
KAG6575630.1	8.8e-197	88.46	Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_038900014.1	1.2e-196	88.46	protein LOW PSII ACCUMULATION 3, chloroplastic [Benincasa hispida]	[more]
XP_023547388.1	1.5e-196	87.95	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0009912 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H0W0	1.1e-144	76.09	Protein LPA3 OS=Arabidopsis thaliana OX=3702 GN=LPA3 PE=1 SV=1	[more]

BLAST of Sed0009912 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTN7	6.6e-198	88.46	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GQW6	1.1e-197	88.46	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5A7UU42	4.4e-194	87.92	Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CFB8	6.4e-193	87.40	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0KA03	3.5e-191	86.92	DUF1995 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G431980 PE=...	[more]

BLAST of Sed0009912 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73060.1	7.6e-146	76.09	Low PSII Accumulation 3	[more]
AT5G48790.1	1.6e-10	26.65	Domain of unknown function (DUF1995)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 122..384 e-value: 1.4E-50 score: 172.1
None	No IPR available	PANTHER	PTHR34051:SF2	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 84..428
IPR044687	Protein LOW PSII ACCUMULATION 3	PANTHER	PTHR34051	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 84..428

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009912.1	Sed0009912.1	mRNA