Sed0009903 (gene) Chayote v1

Overview
NameSed0009903
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG07: 8307343 .. 8307648 (+)
RNA-Seq ExpressionSed0009903
SyntenySed0009903
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGAAGAGTGATTTCTGTTAGAAATGGCCAGAGATACATCTCGCTCGGAAATCGGCGGCGAGAGCGACGGCGGGCGTGGCGGCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGTATGGGATGGAGTTTTCACGGAACAAACAGTTCGATTCATTGAAAGAGATTCCGCCATTAAAGCTCTCAGAAAAAGAAGCAAGAAAACAACAGAAGCTTTCAATTGCTTTCAGTTCTTGAATCTCCTATGCTGCTTCAATTTCTAACTCTCTTCTTCTTCCTCCAATTTTTCCGATCACGAA

mRNA sequence

ATTGAAGAGTGATTTCTGTTAGAAATGGCCAGAGATACATCTCGCTCGGAAATCGGCGGCGAGAGCGACGGCGGGCGTGGCGGCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGTATGGGATGGAGTTTTCACGGAACAAACAGTTCGATTCATTGAAAGAGATTCCGCCATTAAAGCTCTCAGAAAAAGAAGCAAGAAAACAACAGAAGCTTTCAATTGCTTTCAGTTCTTGAATCTCCTATGCTGCTTCAATTTCTAACTCTCTTCTTCTTCCTCCAATTTTTCCGATCACGAA

Coding sequence (CDS)

ATGGCCAGAGATACATCTCGCTCGGAAATCGGCGGCGAGAGCGACGGCGGGCGTGGCGGCGGAGACATTTTCTTCGGTAAGGATGATATGAAAGAATACGTATGGGATGGAGTTTTCACGGAACAAACAGTTCGATTCATTGAAAGAGATTCCGCCATTAAAGCTCTCAGAAAAAGAAGCAAGAAAACAACAGAAGCTTTCAATTGCTTTCAGTTCTTGAATCTCCTATGCTGCTTCAATTTCTAA

Protein sequence

MARDTSRSEIGGESDGGRGGGDIFFGKDDMKEYVWDGVFTEQTVRFIERDSAIKALRKRSKKTTEAFNCFQFLNLLCCFNF
Homology
BLAST of Sed0009903 vs. NCBI nr
Match: KAA0067665.1 (hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669.1 hypothetical protein E5676_scaffold577G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 1  MARDTSRSEIGGESDG-GRGGGDIFFGKDDMKEYVWDGVFTEQTVRFIERDSAIKALRKR 60
          MARD    E GG   G    GGD+FFGKDDMKEY WDGV+TE+TVRFIE +SA KALRKR
Sbjct: 1  MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SKKTTEAFNCFQFLNLLCCFNF 82
          S++  E FNCF+FL ++C F F
Sbjct: 61 SRRKLEPFNCFEFLRIVCSFKF 82

BLAST of Sed0009903 vs. NCBI nr
Match: KGN57263.1 (hypothetical protein Csa_009618 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 1  MARDTSRSEIGGESDG-GRGGGDIFFGKDDMKEYVWDGVFTEQTVRFIERDSAIKALRKR 60
          MARD    E GG   G    GGDIFFGKDDMKEY WDGV+TE+TVRFIE +SA KALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SKKTTEAFNCFQFLNLLCCFNF 82
          S++  E FNCF+FL ++ CF F
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

BLAST of Sed0009903 vs. NCBI nr
Match: KAG6576802.1 (hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014829.1 hypothetical protein SDJN02_22458, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 52/90 (57.78%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 1  MARDTSRSEIGGESDGGRG---------GGDIFFGKDDMKEYVWDGVFTEQTVRFIERDS 60
          MARDT   E  G   GG+           GDIFFGKDDMK YVWD VFTE+TVRF+E +S
Sbjct: 1  MARDTLPYEF-GVGGGGKSCSSPSKYDVVGDIFFGKDDMKGYVWDEVFTEETVRFLETES 60

Query: 61 AIKALRKRSKKTTEAFNCFQFLNLLCCFNF 82
          A++ LRKRSK+  E F CF+FL  L CFNF
Sbjct: 61 AVEVLRKRSKRRLETFKCFEFLKFLWCFNF 89

BLAST of Sed0009903 vs. NCBI nr
Match: KAG7030840.1 (hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-08
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 1  MARDTSRSEIGGESDGGRG-------------GGDIFFGKDDMKEYVWDGVFTEQTVRFI 49
          MA DT+  E GG+ DGGR               GDIFFGKDDMKEY WDG FTE+TVRFI
Sbjct: 1  MAIDTTPFEFGGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60

BLAST of Sed0009903 vs. NCBI nr
Match: KAG6600176.1 (hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-08
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 1  MARDTSRSEIGGESDGGRG-------------GGDIFFGKDDMKEYVWDGVFTEQTVRFI 49
          MA DT+  E GG+ DGGR               GDIFFGKDDMKEY WDG FTE+TVRFI
Sbjct: 1  MAIDTTPFEFGGDGDGGRRCGKSCSRPSKYDVVGDIFFGKDDMKEYAWDGAFTEKTVRFI 60

BLAST of Sed0009903 vs. ExPASy TrEMBL
Match: A0A5D3DK72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00350 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.0e-20
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 1  MARDTSRSEIGGESDG-GRGGGDIFFGKDDMKEYVWDGVFTEQTVRFIERDSAIKALRKR 60
          MARD    E GG   G    GGD+FFGKDDMKEY WDGV+TE+TVRFIE +SA KALRKR
Sbjct: 1  MARDILPFEFGGGGGGESERGGDVFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SKKTTEAFNCFQFLNLLCCFNF 82
          S++  E FNCF+FL ++C F F
Sbjct: 61 SRRKLEPFNCFEFLRIVCSFKF 82

BLAST of Sed0009903 vs. ExPASy TrEMBL
Match: A0A0A0L658 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 1  MARDTSRSEIGGESDG-GRGGGDIFFGKDDMKEYVWDGVFTEQTVRFIERDSAIKALRKR 60
          MARD    E GG   G    GGDIFFGKDDMKEY WDGV+TE+TVRFIE +SA KALRKR
Sbjct: 1  MARDILPFEFGGGGAGESERGGDIFFGKDDMKEYAWDGVYTEETVRFIETESAKKALRKR 60

Query: 61 SKKTTEAFNCFQFLNLLCCFNF 82
          S++  E FNCF+FL ++ CF F
Sbjct: 61 SRRKLEPFNCFEFLKIVWCFKF 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0067665.11.6e-1963.41hypothetical protein E6C27_scaffold70G00340 [Cucumis melo var. makuwa] >TYK23669... [more]
KGN57263.12.1e-1964.63hypothetical protein Csa_009618 [Cucumis sativus][more]
KAG6576802.11.0e-1657.78hypothetical protein SDJN03_24376, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030840.16.5e-0859.02hypothetical protein SDJN02_04877, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600176.16.5e-0859.02hypothetical protein SDJN03_05409, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DK728.0e-2063.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L6581.0e-1964.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175640 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009903.1Sed0009903.1mRNA