Sed0009840 (gene) Chayote v1

Overview


Name	Sed0009840
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box protein SKIP22-like
Location	LG07: 8612040 .. 8612824 (+)
RNA-Seq Expression	Sed0009840
Synteny	Sed0009840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGAGCAATTAGGTCGCGATGCTCGTAAATGCTTTGTAAATACTGTTCACTCTGAACTTTCGAAGTCTGGATTGACGCCGATCGGCCGTATCGCCAAGCATGACTGGAGTTCGACATCGTTTCTGATGACGATTCGGTACGCTTCGTCTATGCTTAACACCAAGGATGAACTAATTTTGGTGAAATTTCAGAGTTCGGAACATTTTGTTACCGCTTATGGATTTGTTAGCTGCATTAGAGAATCGTATGTTTATAGTGTGTCGTTCGACGAAAGAACATTCTCCCCGAATCTTGATTCGGTACCGGATGAAAACGAAGAGAGGAACATGTTGCAACTCCGGAAGGCAGTGAAGGATTCTCTTGCATTGCCACTTTTGAGTGATCTTGAAAGAACTGGCATGTTTCATTCTCCAAGATTGTTTCTACTTCCACATGGTTTTAAACTGGCAGTTTTGGAGGCTCTTTCTGGTGTTGAAATTGCAAAACTTCAATGTGTGTGTGTTGAATTGAAGAATCTTGCTTCCAATAACGACTTGTGGGAGATGAAGTTCAAGAAAGAGTTCCCTTTGGGTGCTTGGGGATTTTTTTCTGATCCTGATCCTGATCCTGTTCTAGAAGATGTGATTTGGAAGAAAGTTTTTGCTACATATTCCATATACAAATGGCTGTTAGGCAAGCCTGGAGGCCAGTGAGTAGTGGATTTGAGTTCTTGAGATATCAGTTTAGGACATTGAGATGGAAGCAATTGTGAAATCTTGTTTGGATACAGATACCAGGTTAG

mRNA sequence

ATGAACGAGCAATTAGGTCGCGATGCTCGTAAATGCTTTGTAAATACTGTTCACTCTGAACTTTCGAAGTCTGGATTGACGCCGATCGGCCGTATCGCCAAGCATGACTGGAGTTCGACATCGTTTCTGATGACGATTCGGTACGCTTCGTCTATGCTTAACACCAAGGATGAACTAATTTTGGTGAAATTTCAGAGTTCGGAACATTTTGTTACCGCTTATGGATTTGTTAGCTGCATTAGAGAATCGTATGTTTATAGTGTGTCGTTCGACGAAAGAACATTCTCCCCGAATCTTGATTCGGTACCGGATGAAAACGAAGAGAGGAACATGTTGCAACTCCGGAAGGCAGTGAAGGATTCTCTTGCATTGCCACTTTTGAGTGATCTTGAAAGAACTGGCATGTTTCATTCTCCAAGATTGTTTCTACTTCCACATGGTTTTAAACTGGCAGTTTTGGAGGCTCTTTCTGGTGTTGAAATTGCAAAACTTCAATGTGTGTGTGTTGAATTGAAGAATCTTGCTTCCAATAACGACTTGTGGGAGATGAAGTTCAAGAAAGAGTTCCCTTTGGGTGCTTGGGGATTTTTTTCTGATCCTGATCCTGATCCTGTTCTAGAAGATGTGATTTGGAAGAAAATACCAGGTTAG

Coding sequence (CDS)

ATGAACGAGCAATTAGGTCGCGATGCTCGTAAATGCTTTGTAAATACTGTTCACTCTGAACTTTCGAAGTCTGGATTGACGCCGATCGGCCGTATCGCCAAGCATGACTGGAGTTCGACATCGTTTCTGATGACGATTCGGTACGCTTCGTCTATGCTTAACACCAAGGATGAACTAATTTTGGTGAAATTTCAGAGTTCGGAACATTTTGTTACCGCTTATGGATTTGTTAGCTGCATTAGAGAATCGTATGTTTATAGTGTGTCGTTCGACGAAAGAACATTCTCCCCGAATCTTGATTCGGTACCGGATGAAAACGAAGAGAGGAACATGTTGCAACTCCGGAAGGCAGTGAAGGATTCTCTTGCATTGCCACTTTTGAGTGATCTTGAAAGAACTGGCATGTTTCATTCTCCAAGATTGTTTCTACTTCCACATGGTTTTAAACTGGCAGTTTTGGAGGCTCTTTCTGGTGTTGAAATTGCAAAACTTCAATGTGTGTGTGTTGAATTGAAGAATCTTGCTTCCAATAACGACTTGTGGGAGATGAAGTTCAAGAAAGAGTTCCCTTTGGGTGCTTGGGGATTTTTTTCTGATCCTGATCCTGATCCTGTTCTAGAAGATGTGATTTGGAAGAAAATACCAGGTTAG

Protein sequence

MNEQLGRDARKCFVNTVHSELSKSGLTPIGRIAKHDWSSTSFLMTIRYASSMLNTKDELILVKFQSSEHFVTAYGFVSCIRESYVYSVSFDERTFSPNLDSVPDENEERNMLQLRKAVKDSLALPLLSDLERTGMFHSPRLFLLPHGFKLAVLEALSGVEIAKLQCVCVELKNLASNNDLWEMKFKKEFPLGAWGFFSDPDPDPVLEDVIWKKIPG

Homology

[Close]

BLAST of Sed0009840 vs. NCBI nr
Match: XP_008454420.1 (PREDICTED: F-box protein SKIP22-like [Cucumis melo] >ADN33816.1 F-box family protein [Cucumis melo subsp. melo] >TYK29445.1 F-box protein SKIP22-like [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-32
Identity = 94/222 (42.34%), Postives = 127/222 (57.21%), Query Frame = 0


Query: 1   MNEQLG--RDARKCFVNTVHSELSKSGLTPIGR---------IAKHDWSSTSFLMTIRYA 60
           + E+LG  R+A K  V  VH+ L +SG   I               DW S SF M++ Y 
Sbjct: 188 LKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPSPSFTMSLWYT 247

Query: 61  SSMLNTK-------DELILVKFQSSEHFVTAYGFVSCIRESYVYSVSFDERTFSPNLDSV 120
              L TK        E++L+KFQS  +FV  YG ++C R S VY VS DER F+PNLD +
Sbjct: 248 LPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDERKFAPNLDLI 307

Query: 121 ------------PDENEERNMLQLRKAVKDSLALPLLSDL-ERTGMFHSPRLFLLPHGFK 180
                        + N E+ + +  K VKD+LALPLL D+ E+TG+       LLP   K
Sbjct: 308 WVDSVSNYIMDEKEGNPEKQVFEFWKIVKDALALPLLIDICEKTGLPPPASFMLLPADVK 367

Query: 181 LAVLEALSGVEIAKLQCVCVELKNLASNNDLWEMKFKKEFPL 192
           L +LEAL GV+IA+++CVC EL+ LAS+N+LW+MKF +EF L
Sbjct: 368 LKILEALPGVDIARVECVCTELRYLASSNELWKMKFNQEFGL 409

[Close]

BLAST of Sed0009840 vs. NCBI nr
Match: KAA0044316.1 (F-box protein SKIP22-like [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-32
Identity = 94/222 (42.34%), Postives = 127/222 (57.21%), Query Frame = 0


Query: 1   MNEQLG--RDARKCFVNTVHSELSKSGLTPIGR---------IAKHDWSSTSFLMTIRYA 60
           + E+LG  R+A K  V  VH+ L +SG   I               DW S SF M++ Y 
Sbjct: 188 LKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPSPSFTMSLWYT 247

Query: 61  SSMLNTK-------DELILVKFQSSEHFVTAYGFVSCIRESYVYSVSFDERTFSPNLDSV 120
              L TK        E++L+KFQS  +FV  YG ++C R S VY VS DER F+PNLD +
Sbjct: 248 LPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDERKFAPNLDLI 307

Query: 121 ------------PDENEERNMLQLRKAVKDSLALPLLSDL-ERTGMFHSPRLFLLPHGFK 180
                        + N E+ + +  K VKD+LALPLL D+ E+TG+       LLP   K
Sbjct: 308 WVDSVSNYIMDEKEGNPEKQVFEFWKIVKDALALPLLIDICEKTGLPPPASFMLLPADVK 367

Query: 181 LAVLEALSGVEIAKLQCVCVELKNLASNNDLWEMKFKKEFPL 192
           L +LEAL GV+IA+++CVC EL+ LAS+N+LW+MKF +EF L
Sbjct: 368 LKILEALPGVDIARVECVCTELRYLASSNELWKMKFNQEFGL 409

[Close]

BLAST of Sed0009840 vs. NCBI nr
Match: XP_022149297.1 (F-box protein SKIP22-like [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-32
Identity = 96/220 (43.64%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 1   MNEQLG--RDARKCFVNTVHSELSKSGLTPI----GRIAKH-----DWSSTSFLMTIRYA 60
           + E+LG  R+A K  V  VH+ L +SG   I    G    H     DW S SF M++ Y 
Sbjct: 191 LKEELGYDRNAHKLLVTAVHAVLLESGFVLIDPNLGAEDNHFHMPEDWPSPSFSMSLWYT 250

Query: 61  SSML-------NTKDELILVKFQSSEHFVTAYGFVSCIRESYVYSVSFDERTFSPNLD-- 120
              L       +   E++L+KFQS  HFV  YG +SC R S VY VS DER F+P+LD  
Sbjct: 251 LPELLAEGGKNSAMTEIVLLKFQSLGHFVNVYGSLSCSRGSSVYRVSLDERKFAPSLDLI 310

Query: 121 -------SVPDENE---ERNMLQLRKAVKDSLALPLLSDL-ERTGMFHSPRLFLLPHGFK 180
                   + DENE   ER + +  K VKD+LALPLL DL E+TG+       LLP   K
Sbjct: 311 WVDSVASHIMDENEGNPERQVFEFWKVVKDALALPLLIDLCEKTGLPPPASFMLLPADVK 370

Query: 181 LAVLEALSGVEIAKLQCVCVELKNLASNNDLWEMKFKKEF 190
           L +LEAL  V+I +++CVC EL+ LAS+N+LW++KF +EF
Sbjct: 371 LKILEALPAVDIGRVECVCTELRYLASSNELWKLKFNQEF 410

[Close]

BLAST of Sed0009840 vs. NCBI nr
Match: KAG6576905.1 (F-box protein SKIP22, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-32
Identity = 94/220 (42.73%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 1   MNEQLG--RDARKCFVNTVHSELSKSGLTPIGR---------IAKHDWSSTSFLMTIRYA 60
           + E+LG  R+A K  V  VH+ L +SG   I               DW S SF M++ Y 
Sbjct: 154 LKEELGYDRNAHKLLVTAVHAVLLESGFVLIDPNLGSEDNPFRMPEDWPSPSFTMSLWYT 213

Query: 61  SSML-------NTKDELILVKFQSSEHFVTAYGFVSCIRESYVYSVSFDERTFSPNLD-- 120
              L       +T  E++L+KFQS  HFV  YG ++C R S VY +S DER F+PNLD  
Sbjct: 214 LPKLLAKEDKSSTMTEVVLLKFQSLGHFVNVYGSLNCSRGSSVYRISLDERKFAPNLDLI 273

Query: 121 -------SVPDENE---ERNMLQLRKAVKDSLALPLLSDL-ERTGMFHSPRLFLLPHGFK 180
                   + DE E   ++ + +L K VKD+LALPLL DL E+TG+       LLP   K
Sbjct: 274 WVDSVSSYIMDEKEGDPDKQVFELWKLVKDALALPLLIDLCEKTGLPTPASFMLLPADLK 333

Query: 181 LAVLEALSGVEIAKLQCVCVELKNLASNNDLWEMKFKKEF 190
           + +LEAL GV+IA+++CVC EL  LAS+N+LW+MKF +EF
Sbjct: 334 MKILEALPGVDIARVECVCTELLYLASSNELWKMKFTEEF 373

[Close]

BLAST of Sed0009840 vs. NCBI nr
Match: XP_022922887.1 (F-box protein SKIP22-like [Cucurbita moschata])

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-32
Identity = 94/220 (42.73%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 1   MNEQLG--RDARKCFVNTVHSELSKSGLTPIGR---------IAKHDWSSTSFLMTIRYA 60
           + E+LG  R+A K  V  VH+ L +SG   I               DW S SF M++ Y 
Sbjct: 180 LKEELGYDRNAHKLLVTAVHAVLLESGFVLIDPNLGSEDNPFRMPEDWPSPSFTMSLWYT 239

Query: 61  SSML-------NTKDELILVKFQSSEHFVTAYGFVSCIRESYVYSVSFDERTFSPNLD-- 120
              L       +T  E++L+KFQS  HFV  YG ++C R S VY +S DER F+PNLD  
Sbjct: 240 LPKLLAKEDKSSTMTEVVLLKFQSLGHFVNVYGSLNCSRGSSVYRISLDERKFAPNLDLI 299

Query: 121 -------SVPDENE---ERNMLQLRKAVKDSLALPLLSDL-ERTGMFHSPRLFLLPHGFK 180
                   + DE E   ++ + +L K VKD+LALPLL DL E+TG+       LLP   K
Sbjct: 300 WVDSVSSYIMDEKEGDPDKQVFELWKLVKDALALPLLIDLCEKTGLPTPASFMLLPADLK 359

Query: 181 LAVLEALSGVEIAKLQCVCVELKNLASNNDLWEMKFKKEF 190
           + +LEAL GV+IA+++CVC EL  LAS+N+LW+MKF +EF
Sbjct: 360 MKILEALPGVDIARVECVCTELLYLASSNELWKMKFTEEF 399

[Close]

BLAST of Sed0009840 vs. ExPASy Swiss-Prot
Match: Q9ZUB9 (Putative F-box protein At1g23770 OS=Arabidopsis thaliana OX=3702 GN=At1g23770 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.6e-17
Identity = 70/216 (32.41%), Postives = 106/216 (49.07%), Query Frame = 0


Query: 16  TVHSELSKSGLTPIGRIA-KHDWSSTSFLMTIRYA-SSMLNTKD----ELILVKFQSSEH 75
           +VH+ + +SG   +   + K  +S     +++RY    ++  KD    E + V+FQ+   
Sbjct: 69  SVHAVMLESGFVLLDHGSDKFSFSKKLLSVSLRYTLPELITRKDTNTVESVTVRFQNIGP 128

Query: 76  FVTAYGFV--SCIRESYVYSVSFDERTFSPNLDSVPD---------ENEERNMLQLRKAV 135
            +  YG +  SC R   V+  S D+  F P +D V D          +  R +  L + V
Sbjct: 129 RLVVYGTLGGSCKR---VHMTSLDKSRFLPVIDLVVDTLKFEKQGSSSYYREVFMLWRMV 188

Query: 136 KDSLALPLLSDL-ERTGMFHSPRLFLLPHGFKLAVLEALSGVEIAKLQCVCVELKNLASN 195
           KD L +PLL  L ++ G+   P L LLP   KL +LE L GV I  + CVC E++ LAS+
Sbjct: 189 KDELVIPLLIGLCDKAGLESPPCLMLLPTELKLKILELLPGVSIGYMACVCTEMRYLASD 248

Query: 196 NDLWEMKFKKEFPLGAWGFFSDPDPDPVLEDVIWKK 214
           NDLWE K  +E     W  ++         DV WK+
Sbjct: 249 NDLWEHKCLEEGKGCLWKLYTG--------DVDWKR 273

[Close]

BLAST of Sed0009840 vs. ExPASy Swiss-Prot
Match: Q9ZUB8 (F-box protein SKIP22 OS=Arabidopsis thaliana OX=3702 GN=SKIP22 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-15
Identity = 63/189 (33.33%), Postives = 98/189 (51.85%), Query Frame = 0


Query: 16  TVHSELSKSGLTPIGRIA-KHDWSSTSFLMTIRYA-SSMLNTKD----ELILVKFQSSEH 75
           +VH+ + +SG   +   + K ++S     +++RY    ++ +KD    E + VKFQ+   
Sbjct: 183 SVHAVMLESGFVLLNHGSDKFNFSKELLTVSLRYTLPELIKSKDTNTIESVSVKFQNLGP 242

Query: 76  FVTAYGFVSCIRESYVYSVSFDERTFSPNLDSVPD---ENEE------RNMLQLRKAVKD 135
            V  YG V     S    ++ D+R F P +D V D    +EE      R +    + VKD
Sbjct: 243 VVVVYGTVG--GSSGRVHMNLDKRRFVPVIDLVMDTSTSDEEGSSSIYREVFMFWRMVKD 302

Query: 136 SLALPLLSDL-ERTGMFHSPRLFLLPHGFKLAVLEALSGVEIAKLQCVCVELKNLASNND 189
            L +PLL  + ++ G+   P L  LP   KL +LE L GV I  + CVC E++ LAS+ND
Sbjct: 303 RLVIPLLIGICDKAGLEPPPCLMRLPTELKLKILELLPGVSIGNMACVCTEMRYLASDND 362

[Close]

BLAST of Sed0009840 vs. ExPASy Swiss-Prot
Match: O64600 (F-box protein At1g70360 OS=Arabidopsis thaliana OX=3702 GN=At1g70360 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.7e-05
Identity = 36/105 (34.29%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 83  SYVYSVSFDERTFSPNLDSV-----PDENEERNMLQLR-----KAVKDSLALPLLSDL-E 142
           S+V  VS D+R++   +D +      DE E+   +  +     + +KD +  PLL DL  
Sbjct: 70  SFVRVVSIDKRSYVHIVDLLMETLKSDEEEDTLSIDCKVLVWWRMIKDGIVTPLLVDLCY 129

Query: 143 RTGMFHSPRLFLLPHGFKLAVLEALSGVEIAKLQCVCVELKNLAS 177
           +TG+   P    LP   K  +LE+L GV+I  L CV  EL+++AS
Sbjct: 130 KTGLELPPCFISLPRELKHKILESLPGVDIGTLACVSSELRDMAS 174

[Close]

BLAST of Sed0009840 vs. ExPASy TrEMBL
Match: A0A5A7TQD4 (F-box protein SKIP22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00380 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.8e-33
Identity = 94/222 (42.34%), Postives = 127/222 (57.21%), Query Frame = 0


Query: 1   MNEQLG--RDARKCFVNTVHSELSKSGLTPIGR---------IAKHDWSSTSFLMTIRYA 60
           + E+LG  R+A K  V  VH+ L +SG   I               DW S SF M++ Y 
Sbjct: 188 LKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPSPSFTMSLWYT 247

Query: 61  SSMLNTK-------DELILVKFQSSEHFVTAYGFVSCIRESYVYSVSFDERTFSPNLDSV 120
              L TK        E++L+KFQS  +FV  YG ++C R S VY VS DER F+PNLD +
Sbjct: 248 LPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDERKFAPNLDLI 307

Query: 121 ------------PDENEERNMLQLRKAVKDSLALPLLSDL-ERTGMFHSPRLFLLPHGFK 180
                        + N E+ + +  K VKD+LALPLL D+ E+TG+       LLP   K
Sbjct: 308 WVDSVSNYIMDEKEGNPEKQVFEFWKIVKDALALPLLIDICEKTGLPPPASFMLLPADVK 367

Query: 181 LAVLEALSGVEIAKLQCVCVELKNLASNNDLWEMKFKKEFPL 192
           L +LEAL GV+IA+++CVC EL+ LAS+N+LW+MKF +EF L
Sbjct: 368 LKILEALPGVDIARVECVCTELRYLASSNELWKMKFNQEFGL 409

[Close]

BLAST of Sed0009840 vs. ExPASy TrEMBL
Match: A0A5D3E231 (F-box protein SKIP22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00380 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.8e-33
Identity = 94/222 (42.34%), Postives = 127/222 (57.21%), Query Frame = 0


Query: 1   MNEQLG--RDARKCFVNTVHSELSKSGLTPIGR---------IAKHDWSSTSFLMTIRYA 60
           + E+LG  R+A K  V  VH+ L +SG   I               DW S SF M++ Y 
Sbjct: 188 LKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPSPSFTMSLWYT 247

Query: 61  SSMLNTK-------DELILVKFQSSEHFVTAYGFVSCIRESYVYSVSFDERTFSPNLDSV 120
              L TK        E++L+KFQS  +FV  YG ++C R S VY VS DER F+PNLD +
Sbjct: 248 LPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDERKFAPNLDLI 307

Query: 121 ------------PDENEERNMLQLRKAVKDSLALPLLSDL-ERTGMFHSPRLFLLPHGFK 180
                        + N E+ + +  K VKD+LALPLL D+ E+TG+       LLP   K
Sbjct: 308 WVDSVSNYIMDEKEGNPEKQVFEFWKIVKDALALPLLIDICEKTGLPPPASFMLLPADVK 367

Query: 181 LAVLEALSGVEIAKLQCVCVELKNLASNNDLWEMKFKKEFPL 192
           L +LEAL GV+IA+++CVC EL+ LAS+N+LW+MKF +EF L
Sbjct: 368 LKILEALPGVDIARVECVCTELRYLASSNELWKMKFNQEFGL 409

[Close]

BLAST of Sed0009840 vs. ExPASy TrEMBL
Match: E5GBH4 (F-box family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.8e-33
Identity = 94/222 (42.34%), Postives = 127/222 (57.21%), Query Frame = 0


Query: 1   MNEQLG--RDARKCFVNTVHSELSKSGLTPIGR---------IAKHDWSSTSFLMTIRYA 60
           + E+LG  R+A K  V  VH+ L +SG   I               DW S SF M++ Y 
Sbjct: 188 LKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPSPSFTMSLWYT 247

Query: 61  SSMLNTK-------DELILVKFQSSEHFVTAYGFVSCIRESYVYSVSFDERTFSPNLDSV 120
              L TK        E++L+KFQS  +FV  YG ++C R S VY VS DER F+PNLD +
Sbjct: 248 LPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDERKFAPNLDLI 307

Query: 121 ------------PDENEERNMLQLRKAVKDSLALPLLSDL-ERTGMFHSPRLFLLPHGFK 180
                        + N E+ + +  K VKD+LALPLL D+ E+TG+       LLP   K
Sbjct: 308 WVDSVSNYIMDEKEGNPEKQVFEFWKIVKDALALPLLIDICEKTGLPPPASFMLLPADVK 367

Query: 181 LAVLEALSGVEIAKLQCVCVELKNLASNNDLWEMKFKKEFPL 192
           L +LEAL GV+IA+++CVC EL+ LAS+N+LW+MKF +EF L
Sbjct: 368 LKILEALPGVDIARVECVCTELRYLASSNELWKMKFNQEFGL 409

[Close]

BLAST of Sed0009840 vs. ExPASy TrEMBL
Match: A0A1S3BZC5 (F-box protein SKIP22-like OS=Cucumis melo OX=3656 GN=LOC103494830 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.8e-33
Identity = 94/222 (42.34%), Postives = 127/222 (57.21%), Query Frame = 0


Query: 1   MNEQLG--RDARKCFVNTVHSELSKSGLTPIGR---------IAKHDWSSTSFLMTIRYA 60
           + E+LG  R+A K  V  VH+ L +SG   I               DW S SF M++ Y 
Sbjct: 188 LKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGFEDSPFRMPEDWPSPSFTMSLWYT 247

Query: 61  SSMLNTK-------DELILVKFQSSEHFVTAYGFVSCIRESYVYSVSFDERTFSPNLDSV 120
              L TK        E++L+KFQS  +FV  YG ++C R S VY VS DER F+PNLD +
Sbjct: 248 LPELLTKRGKNSTMTEVVLLKFQSLGYFVNVYGSLNCSRGSSVYRVSLDERKFAPNLDLI 307

Query: 121 ------------PDENEERNMLQLRKAVKDSLALPLLSDL-ERTGMFHSPRLFLLPHGFK 180
                        + N E+ + +  K VKD+LALPLL D+ E+TG+       LLP   K
Sbjct: 308 WVDSVSNYIMDEKEGNPEKQVFEFWKIVKDALALPLLIDICEKTGLPPPASFMLLPADVK 367

Query: 181 LAVLEALSGVEIAKLQCVCVELKNLASNNDLWEMKFKKEFPL 192
           L +LEAL GV+IA+++CVC EL+ LAS+N+LW+MKF +EF L
Sbjct: 368 LKILEALPGVDIARVECVCTELRYLASSNELWKMKFNQEFGL 409

[Close]

BLAST of Sed0009840 vs. ExPASy TrEMBL
Match: A0A6J1D7J8 (F-box protein SKIP22-like OS=Momordica charantia OX=3673 GN=LOC111017746 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 9.8e-33
Identity = 96/220 (43.64%), Postives = 127/220 (57.73%), Query Frame = 0


Query: 1   MNEQLG--RDARKCFVNTVHSELSKSGLTPI----GRIAKH-----DWSSTSFLMTIRYA 60
           + E+LG  R+A K  V  VH+ L +SG   I    G    H     DW S SF M++ Y 
Sbjct: 191 LKEELGYDRNAHKLLVTAVHAVLLESGFVLIDPNLGAEDNHFHMPEDWPSPSFSMSLWYT 250

Query: 61  SSML-------NTKDELILVKFQSSEHFVTAYGFVSCIRESYVYSVSFDERTFSPNLD-- 120
              L       +   E++L+KFQS  HFV  YG +SC R S VY VS DER F+P+LD  
Sbjct: 251 LPELLAEGGKNSAMTEIVLLKFQSLGHFVNVYGSLSCSRGSSVYRVSLDERKFAPSLDLI 310

Query: 121 -------SVPDENE---ERNMLQLRKAVKDSLALPLLSDL-ERTGMFHSPRLFLLPHGFK 180
                   + DENE   ER + +  K VKD+LALPLL DL E+TG+       LLP   K
Sbjct: 311 WVDSVASHIMDENEGNPERQVFEFWKVVKDALALPLLIDLCEKTGLPPPASFMLLPADVK 370

Query: 181 LAVLEALSGVEIAKLQCVCVELKNLASNNDLWEMKFKKEF 190
           L +LEAL  V+I +++CVC EL+ LAS+N+LW++KF +EF
Sbjct: 371 LKILEALPAVDIGRVECVCTELRYLASSNELWKLKFNQEF 410

[Close]

BLAST of Sed0009840 vs. TAIR 10
Match: AT1G23770.1 (F-box family protein )

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-18
Identity = 70/216 (32.41%), Postives = 106/216 (49.07%), Query Frame = 0


Query: 16  TVHSELSKSGLTPIGRIA-KHDWSSTSFLMTIRYA-SSMLNTKD----ELILVKFQSSEH 75
           +VH+ + +SG   +   + K  +S     +++RY    ++  KD    E + V+FQ+   
Sbjct: 69  SVHAVMLESGFVLLDHGSDKFSFSKKLLSVSLRYTLPELITRKDTNTVESVTVRFQNIGP 128

Query: 76  FVTAYGFV--SCIRESYVYSVSFDERTFSPNLDSVPD---------ENEERNMLQLRKAV 135
            +  YG +  SC R   V+  S D+  F P +D V D          +  R +  L + V
Sbjct: 129 RLVVYGTLGGSCKR---VHMTSLDKSRFLPVIDLVVDTLKFEKQGSSSYYREVFMLWRMV 188

Query: 136 KDSLALPLLSDL-ERTGMFHSPRLFLLPHGFKLAVLEALSGVEIAKLQCVCVELKNLASN 195
           KD L +PLL  L ++ G+   P L LLP   KL +LE L GV I  + CVC E++ LAS+
Sbjct: 189 KDELVIPLLIGLCDKAGLESPPCLMLLPTELKLKILELLPGVSIGYMACVCTEMRYLASD 248

Query: 196 NDLWEMKFKKEFPLGAWGFFSDPDPDPVLEDVIWKK 214
           NDLWE K  +E     W  ++         DV WK+
Sbjct: 249 NDLWEHKCLEEGKGCLWKLYTG--------DVDWKR 273

[Close]

BLAST of Sed0009840 vs. TAIR 10
Match: AT1G23780.1 (F-box family protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 63/189 (33.33%), Postives = 98/189 (51.85%), Query Frame = 0


Query: 16  TVHSELSKSGLTPIGRIA-KHDWSSTSFLMTIRYA-SSMLNTKD----ELILVKFQSSEH 75
           +VH+ + +SG   +   + K ++S     +++RY    ++ +KD    E + VKFQ+   
Sbjct: 183 SVHAVMLESGFVLLNHGSDKFNFSKELLTVSLRYTLPELIKSKDTNTIESVSVKFQNLGP 242

Query: 76  FVTAYGFVSCIRESYVYSVSFDERTFSPNLDSVPD---ENEE------RNMLQLRKAVKD 135
            V  YG V     S    ++ D+R F P +D V D    +EE      R +    + VKD
Sbjct: 243 VVVVYGTVG--GSSGRVHMNLDKRRFVPVIDLVMDTSTSDEEGSSSIYREVFMFWRMVKD 302

Query: 136 SLALPLLSDL-ERTGMFHSPRLFLLPHGFKLAVLEALSGVEIAKLQCVCVELKNLASNND 189
            L +PLL  + ++ G+   P L  LP   KL +LE L GV I  + CVC E++ LAS+ND
Sbjct: 303 RLVIPLLIGICDKAGLEPPPCLMRLPTELKLKILELLPGVSIGNMACVCTEMRYLASDND 362

[Close]

BLAST of Sed0009840 vs. TAIR 10
Match: AT1G70360.1 (F-box family protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06
Identity = 36/105 (34.29%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 83  SYVYSVSFDERTFSPNLDSV-----PDENEERNMLQLR-----KAVKDSLALPLLSDL-E 142
           S+V  VS D+R++   +D +      DE E+   +  +     + +KD +  PLL DL  
Sbjct: 70  SFVRVVSIDKRSYVHIVDLLMETLKSDEEEDTLSIDCKVLVWWRMIKDGIVTPLLVDLCY 129

Query: 143 RTGMFHSPRLFLLPHGFKLAVLEALSGVEIAKLQCVCVELKNLAS 177
           +TG+   P    LP   K  +LE+L GV+I  L CV  EL+++AS
Sbjct: 130 KTGLELPPCFISLPRELKHKILESLPGVDIGTLACVSSELRDMAS 174

The following BLAST results are available for this feature:

BLAST of Sed0009840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454420.1	1.2e-32	42.34	PREDICTED: F-box protein SKIP22-like [Cucumis melo] >ADN33816.1 F-box family pro...	[more]
KAA0044316.1	1.2e-32	42.34	F-box protein SKIP22-like [Cucumis melo var. makuwa]	[more]
XP_022149297.1	2.0e-32	43.64	F-box protein SKIP22-like [Momordica charantia]	[more]
KAG6576905.1	2.6e-32	42.73	F-box protein SKIP22, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022922887.1	2.6e-32	42.73	F-box protein SKIP22-like [Cucurbita moschata]	[more]

BLAST of Sed0009840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUB9	5.6e-17	32.41	Putative F-box protein At1g23770 OS=Arabidopsis thaliana OX=3702 GN=At1g23770 PE...	[more]
Q9ZUB8	1.8e-15	33.33	F-box protein SKIP22 OS=Arabidopsis thaliana OX=3702 GN=SKIP22 PE=1 SV=1	[more]
O64600	1.7e-05	34.29	F-box protein At1g70360 OS=Arabidopsis thaliana OX=3702 GN=At1g70360 PE=2 SV=1	[more]

BLAST of Sed0009840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQD4	5.8e-33	42.34	F-box protein SKIP22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3E231	5.8e-33	42.34	F-box protein SKIP22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
E5GBH4	5.8e-33	42.34	F-box family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3BZC5	5.8e-33	42.34	F-box protein SKIP22-like OS=Cucumis melo OX=3656 GN=LOC103494830 PE=4 SV=1	[more]
A0A6J1D7J8	9.8e-33	43.64	F-box protein SKIP22-like OS=Momordica charantia OX=3673 GN=LOC111017746 PE=4 SV...	[more]

BLAST of Sed0009840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23770.1	4.0e-18	32.41	F-box family protein	[more]
AT1G23780.1	1.3e-16	33.33	F-box family protein	[more]
AT1G70360.1	1.2e-06	34.29	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 136..214 e-value: 5.0E-5 score: 25.1
None	No IPR available	GENE3D	3.40.1000.30		coord: 2..135 e-value: 8.7E-11 score: 43.6
None	No IPR available	PANTHER	PTHR47602	F-BOX PROTEIN SKIP22	coord: 4..189
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 134..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009840.1	Sed0009840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding