Sed0009829 (gene) Chayote v1

Overview


Name	Sed0009829
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Gag/pol protein
Location	LG11: 23880067 .. 23880489 (+)
RNA-Seq Expression	Sed0009829
Synteny	Sed0009829

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCCGAGCCATTCCTAATGCTAAGACAAGTCAGGAATGTAAGTGACGGAGCATGTACTCTAGATGATAACATGGATGAAATGAATGAGGACGTTATAGAGGAATTTGATCAGGTAAGTTTTATTCTTGAGACGATACCGAGTAGCTTCTTACAATTTAAAAGCAATATTGTTATGAATAAGGTTGCCTTTAACCTTGGTACTCTTCTTAATGAACTTCAAAACTTTGAGTCCATTGTGAAAATCTCGGGAAAAGAAGGGGAGGAAAATGTTGTCATCAAGAAAAAGAGTCCTCGAACCACGAGTTCAAGGACCAAGCCTAAAGGTCGGACATTTAAGGTAAGTTCTAAAAAAGAAAGACCTAGTGGGAGCAAGAATAAGTGCTATGCTTCAAAGAAAGTCAAGGCTGAGAAGGATTGA

mRNA sequence

ATGCTCTCCGAGCCATTCCTAATGCTAAGACAAGTCAGGAATGTAAGTGACGGAGCATGTACTCTAGATGATAACATGGATGAAATGAATGAGGACGTTATAGAGGAATTTGATCAGGTAAGTTTTATTCTTGAGACGATACCGAGTAGCTTCTTACAATTTAAAAGCAATATTGTTATGAATAAGGTTGCCTTTAACCTTGGTACTCTTCTTAATGAACTTCAAAACTTTGAGTCCATTGTGAAAATCTCGGGAAAAGAAGGGGAGGAAAATGTTGTCATCAAGAAAAAGAGTCCTCGAACCACGAGTTCAAGGACCAAGCCTAAAGGTCGGACATTTAAGGTAAGTTCTAAAAAAGAAAGACCTAGTGGGAGCAAGAATAAGTGCTATGCTTCAAAGAAAGTCAAGGCTGAGAAGGATTGA

Coding sequence (CDS)

ATGCTCTCCGAGCCATTCCTAATGCTAAGACAAGTCAGGAATGTAAGTGACGGAGCATGTACTCTAGATGATAACATGGATGAAATGAATGAGGACGTTATAGAGGAATTTGATCAGGTAAGTTTTATTCTTGAGACGATACCGAGTAGCTTCTTACAATTTAAAAGCAATATTGTTATGAATAAGGTTGCCTTTAACCTTGGTACTCTTCTTAATGAACTTCAAAACTTTGAGTCCATTGTGAAAATCTCGGGAAAAGAAGGGGAGGAAAATGTTGTCATCAAGAAAAAGAGTCCTCGAACCACGAGTTCAAGGACCAAGCCTAAAGGTCGGACATTTAAGGTAAGTTCTAAAAAAGAAAGACCTAGTGGGAGCAAGAATAAGTGCTATGCTTCAAAGAAAGTCAAGGCTGAGAAGGATTGA

Protein sequence

MLSEPFLMLRQVRNVSDGACTLDDNMDEMNEDVIEEFDQVSFILETIPSSFLQFKSNIVMNKVAFNLGTLLNELQNFESIVKISGKEGEENVVIKKKSPRTTSSRTKPKGRTFKVSSKKERPSGSKNKCYASKKVKAEKD

Homology

[Close]

BLAST of Sed0009829 vs. NCBI nr
Match: TYJ96755.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-15
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 25  NMDEMNEDVIEEFDQVSFILETIPSSFLQFKSNIVMNKVAFNLGTLLNELQNFESIVKIS 84
           NM EMNE VI+E  QVSFILE++P SFLQF+SN VMNK+A+ L TLLNELQ FES++KI 
Sbjct: 115 NMAEMNEAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 174

Query: 85  GKEGEENVVIK-KKSPRTTSSRTK--PKGRTFKVSSKKERPSGSKNKCYA---SKKVKAE 140
           G++GE NV    +K  R + S TK  P     K S KK+   G+K    A   SKK KA 
Sbjct: 175 GQKGEANVATSTRKFYRGSISGTKSMPYSSDNKKSKKKKGGQGNKANLAAAKISKKAKAA 234

[Close]

BLAST of Sed0009829 vs. NCBI nr
Match: KAA0062798.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-15
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 25  NMDEMNEDVIEEFDQVSFILETIPSSFLQFKSNIVMNKVAFNLGTLLNELQNFESIVKIS 84
           NM EMNE VI+E  QVSFILE++P SFLQF+SN VMNK+A+ L TLLNELQ FES++KI 
Sbjct: 115 NMAEMNEAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 174

Query: 85  GKEGEENVVIK-KKSPRTTSSRTK--PKGRTFKVSSKKERPSGSKNKCYA---SKKVKAE 140
           G++GE NV    +K  R + S TK  P     K S KK+   G+K    A   SKK KA 
Sbjct: 175 GQKGEANVATSTRKFYRGSISGTKSMPYSSDNKKSKKKKGGQGNKANLAAAKISKKAKAA 234

[Close]

BLAST of Sed0009829 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 7.2e-15
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 25  NMDEMNEDVIEEFDQVSFILETIPSSFLQFKSNIVMNKVAFNLGTLLNELQNFESIVKIS 84
           N+ EMN  VI+E  QVSFILE++P SFLQF+SN VMNK+A+ L TLLNELQ FES++KI 
Sbjct: 140 NVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

Query: 85  GKEGEENVVIKKKSPRTTSSRTKPKGRTFKVSSKKERPSGSKNKCYASKK 135
           G++GE NV         TS+R   +G T   S  K  PS S NK +  KK
Sbjct: 200 GQKGEANV--------ATSTRKFHRGST---SGTKSMPSSSGNKKWKKKK 238

[Close]

BLAST of Sed0009829 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 7.2e-15
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 25  NMDEMNEDVIEEFDQVSFILETIPSSFLQFKSNIVMNKVAFNLGTLLNELQNFESIVKIS 84
           N+ EMN  VI+E  QVSFILE++P SFLQF+SN VMNK+A+ L TLLNELQ FES++KI 
Sbjct: 139 NVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 198

Query: 85  GKEGEENVVIKKKSPRTTSSRTKPKGRTFKVSSKKERPSGSKNKCYASKK 135
           G++GE NV         TS+R   +G T   S  K  PS S NK +  KK
Sbjct: 199 GQKGEANV--------ATSTRKFHRGST---SGTKSMPSSSGNKKWKKKK 237

[Close]

BLAST of Sed0009829 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 7.2e-15
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 25  NMDEMNEDVIEEFDQVSFILETIPSSFLQFKSNIVMNKVAFNLGTLLNELQNFESIVKIS 84
           N+ EMN  VI+E  QVSFILE++P SFLQF+SN VMNK+A+ L TLLNELQ FES++KI 
Sbjct: 140 NVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

Query: 85  GKEGEENVVIKKKSPRTTSSRTKPKGRTFKVSSKKERPSGSKNKCYASKK 135
           G++GE NV         TS+R   +G T   S  K  PS S NK +  KK
Sbjct: 200 GQKGEANV--------ATSTRKFHRGST---SGTKSMPSSSGNKKWKKKK 238

[Close]

BLAST of Sed0009829 vs. ExPASy TrEMBL
Match: A0A5D3BE74 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00490 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.2e-16
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 25  NMDEMNEDVIEEFDQVSFILETIPSSFLQFKSNIVMNKVAFNLGTLLNELQNFESIVKIS 84
           NM EMNE VI+E  QVSFILE++P SFLQF+SN VMNK+A+ L TLLNELQ FES++KI 
Sbjct: 115 NMAEMNEAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 174

Query: 85  GKEGEENVVIK-KKSPRTTSSRTK--PKGRTFKVSSKKERPSGSKNKCYA---SKKVKAE 140
           G++GE NV    +K  R + S TK  P     K S KK+   G+K    A   SKK KA 
Sbjct: 175 GQKGEANVATSTRKFYRGSISGTKSMPYSSDNKKSKKKKGGQGNKANLAAAKISKKAKAA 234

[Close]

BLAST of Sed0009829 vs. ExPASy TrEMBL
Match: A0A5A7V5A8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G00150 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 9.2e-16
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 25  NMDEMNEDVIEEFDQVSFILETIPSSFLQFKSNIVMNKVAFNLGTLLNELQNFESIVKIS 84
           NM EMNE VI+E  QVSFILE++P SFLQF+SN VMNK+A+ L TLLNELQ FES++KI 
Sbjct: 115 NMAEMNEAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 174

Query: 85  GKEGEENVVIK-KKSPRTTSSRTK--PKGRTFKVSSKKERPSGSKNKCYA---SKKVKAE 140
           G++GE NV    +K  R + S TK  P     K S KK+   G+K    A   SKK KA 
Sbjct: 175 GQKGEANVATSTRKFYRGSISGTKSMPYSSDNKKSKKKKGGQGNKANLAAAKISKKAKAA 234

[Close]

BLAST of Sed0009829 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-15
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 25  NMDEMNEDVIEEFDQVSFILETIPSSFLQFKSNIVMNKVAFNLGTLLNELQNFESIVKIS 84
           N+ EMN  VI+E  QVSFILE++P SFLQF+SN VMNK+A+ L TLLNELQ FES++KI 
Sbjct: 140 NVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

Query: 85  GKEGEENVVIKKKSPRTTSSRTKPKGRTFKVSSKKERPSGSKNKCYASKK 135
           G++GE NV         TS+R   +G T   S  K  PS S NK +  KK
Sbjct: 200 GQKGEANV--------ATSTRKFHRGST---SGTKSMPSSSGNKKWKKKK 238

[Close]

BLAST of Sed0009829 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-15
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 25  NMDEMNEDVIEEFDQVSFILETIPSSFLQFKSNIVMNKVAFNLGTLLNELQNFESIVKIS 84
           N+ EMN  VI+E  QVSFILE++P SFLQF+SN VMNK+A+ L TLLNELQ FES++KI 
Sbjct: 140 NVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 199

Query: 85  GKEGEENVVIKKKSPRTTSSRTKPKGRTFKVSSKKERPSGSKNKCYASKK 135
           G++GE NV         TS+R   +G T   S  K  PS S NK +  KK
Sbjct: 200 GQKGEANV--------ATSTRKFHRGST---SGTKSMPSSSGNKKWKKKK 238

[Close]

BLAST of Sed0009829 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-15
Identity = 59/110 (53.64%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 25  NMDEMNEDVIEEFDQVSFILETIPSSFLQFKSNIVMNKVAFNLGTLLNELQNFESIVKIS 84
           N+ EMN  VI+E  QVSFILE++P SFLQF+SN VMNK+A+ L TLLNELQ FES++KI 
Sbjct: 257 NVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIK 316

Query: 85  GKEGEENVVIKKKSPRTTSSRTKPKGRTFKVSSKKERPSGSKNKCYASKK 135
           G++GE NV         TS+R   +G T   S  K  PS S NK +  KK
Sbjct: 317 GQKGEANV--------ATSTRKFHRGST---SGTKSMPSSSGNKKWKKKK 355

The following BLAST results are available for this feature:

BLAST of Sed0009829 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96755.1	1.9e-15	54.55	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062798.1	1.9e-15	54.55	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	7.2e-15	53.64	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	7.2e-15	53.64	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	7.2e-15	53.64	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0009829 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0009829 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BE74	9.2e-16	54.55	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G0049...	[more]
A0A5A7V5A8	9.2e-16	54.55	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G0015...	[more]
A0A5A7SMH8	3.5e-15	53.64	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	3.5e-15	53.64	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	3.5e-15	53.64	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]

BLAST of Sed0009829 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009829.1	Sed0009829.1	mRNA