Sed0009827 (gene) Chayote v1

Overview


Name	Sed0009827
Type	gene
Organism	Sechium edule (Chayote v1)
Description	S4 RNA-binding domain-containing protein
Location	LG07: 2185421 .. 2189505 (-)
RNA-Seq Expression	Sed0009827
Synteny	Sed0009827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCGTTCTCTCCGACTTTCTCTCGTTTCTTCTTTTCAACACCAAAATCCAATCGCCCCATAACTTTTCGAAAAATCCAATGCTTCATTTTTGTGTATAAATTTCAAACATCACAGTATACAATTCGATAGCTAGGCGCATATTTCGCTACAAGAGCTTCGAGACTCTCCTTTGAATAAGCAGTAGAATTTACAGAATCGTGTGAAGAACTAGAATCCGATGATGTCGAAGTGCGTCCTGAATCGGAATCATTTCGCAAGAATTTTCCTCTTTTCGCCGTTATCTTGCTCGCCGATCAATTCCCTTTCTCCCAAACCCTTTTCCGTCGCCAGGTCGGGAAAGATTCAGATTCAGTCACTGAATCTGTAAGCATTCTCCGTTTTAATCTGTTCCCAGATTCTGAATTGTGTTTTTAGCAATTGGGAATGAAGCTGTTGTTGTGTGTATTAGGAAAAACAAGAAGAGATTGGACGAGATATGTGTAGAAAGGTACCAGCAATACAGCCGCACAATCATCCAATCCTGGATATTACAAGGTAACCCTAATTTCATTTCAACTTCATTTCAACTTCATTTCTCTTTTGGTGTTTCATTGATGGGTTTTTGTTTAGGTAAAGTATTGGTGGATGGAAAAGTAGTCTGTAAAGCTGGAACGCCCGTCGGCGATAAAGCTAGGGTTGAGATTATTGCTGAAGTTCCGAAATATGTATGTAGGTGATACAACTTGGCTGTAAACTTTGTATTTTCCCCCCATATATGAAGTCTCTGAAGTTAATATAACCAAGTGATTTTATAAATATTATCATGAAATTCAGAGCAGGGTTCAAGTTGGAAGCTGCCATTGAACAGTTGGGTGTTGATGTTGATGATAAAGTTGCTCTTGATGCTGGATTATCCAGTGGAGGATTTACTGACTGTTTGCTTCAGCATGGGGCTTCATTTGTCTATGGAGTTGATGTTGGCTATGGACAGGTAAAATTTATAAATTCCATTATTTTTTTTATATACCAAGAATTAGTGCTTTGCTCCACTACATATCTAGGGGCACTTGCATCCTTTGCAAGACTCGAACCCCAAAGATAACGAGAGATTTTGCAATAAACCCCACTCTTGGGTTTCGAACATGGGATCTTCAAGTGAGCATACCTTGGAGACTCCAAGCCTCCACCAATGAGGCTTCCCTTTTGGGACTCTTTCTAACACATATTGTTTGCTATATTGATGAGTGCACAAATAGATATCTCCAGTAGAAAAATGGTACTACACTATCTTTTTCTTGAAAGATCAACTACTTTTTTAAAAAAAATTATTTGTCCTAGTTCTAGTACAGGAAACAATTAGATTGAAGAAGAGGTACTGCAAAAGAGGGGTAGATGACTAGAAATTAAATCCAAGCCCAGGTTTAAGAGATAACAAAATACCATCGAACTAATCAGATTTAGTAATAAGTGTATGCTTAACCCAATCAGTTGATAAACTATTGTTCATTTTCATACCTTCAATATTTATGTGGGAACTTAATGCTTCCCTGCACTTTCTTCTGTTCCACTGTGATGTGTCATTGATCTGCAGAATTTTTAGGTTGCTGACAAGATTCGTCGAGATGAACGTGTTTGTGTGATGGAAAGGACAAACTTAAGATATCTTACTGGACTTCCTCAAAAAGTTGATATTGTGACTTTGGACCTTTCTTTCATTTCTATTCTCTTGGTATGGTTTCGTTTACTTTGCACGTCAGTTTGTTTAATCTAGTAGATACCAGGAAAGTTTTTCGGTTTTGTAAGTTGAAAAAGTTAACAATTTCCCTTTGAATCTGCCATCATGATTTTCTTTTACAGATAACTACTGATCCAAAAAAAAAAAAGATTAAGAAATAATATTTTTCTTACTTTATGTTCAAACTGTTTGGCTGAAATCTGTGAACAAATATTTCGTGTTGTGTGTGTTGTACCACTGACCCGCTGTATTTTTACTCAAATTCCTTTTGTCAAGTCTTTTTCCTTTAAACGTAATAATGGAGTATGAATAATGACCAAAGACTTGATGCATCTTATTGTATTGTAGCACGCACCTCTGTGTGTTGGCTATCTTATTTTAATTCGTTAGTCTGAACAAATGTAAGTATGGTAGAAATATTATATAGTCGTAGTTTATCATAGAATAAATTTGTTCACATGTCACTAGTGTCTTGATTTTGACCATAAAGTCTTGCATTGGTCATTTTTAAGTACTTCGTTCTTTTTTGTATTCCATATGTTTTTTATTCTTATTTGCTTTTGGATAGGTCATGCCTGCTGTGGTCAATGTAATGAAGGAAACGTCAACAATTGTTACGTTGGTGAAACCTCAATTTGAATGTCGCAGATCACAAGTAAGTAGACTCTGAGTTCTTTTCCTTCTTGATTGTGCAGTTCCTTTATGACATTAGATGTTTGTTTGGTTAACGTTATTACAGTTAGTATGTCTAAATAGGGCTTGTCTAGAAAATATGATCAAGTTTATTTAAGATATTTATTCCTATATGGTTAGTGGTTCACCTATACAACTTCTCTTGGGGAATTTCAAAAGCTATTTGTTGACTAGTGCCATATTCTATCGGCATGAAATTGTTTCTTATCCAAAAAAAAGACAAGTGCCATATTCTATCTGCATATATTTCGTAATTGACACCTCACTCTTTTAGACTTTTTATTTTTTTGGAATAAGAAATCATTTCATTGCCCCTCTTTCAGTTTATTAGACGTTGTGAGTGACCCTGACCCGTGACACCTTTTCGTTGCAATCACATCTTTAAAAGTGAAGCAGTCATTAAAGTTTTAAATAAGGAGAAATGGTGACTGGGAATGTAAAAGAATATTGACCTGAAAAAGTGGTGATCTTCCTTCCCTTCAAACATTGGCTTTCTTCCACCTTTCTGGTCCTCAACACTAACTATTAGTCAACTCAACTCAAAAGAGACATTTAGTTGGTCCTTTATTTTTCTTTGAAACAAGTGTAACCACGCCCGTCCTTAGGCCAGACATCGGGAGACATCGAAGGATTAATGTCACAGCGGAGTCTCGAACCTGGGACCTTGAGGGGGGAGCATACCTTCAAAGCTCAAGTCTTCAACAACTGTGCCACCCCTTGGGGACAGTTGGTCCTTTATGCATCGGACGATCTATGGAATTGGTTGGTAATCCCTATTCACATTGAAGCAACTGATGCCAACAGAAAAGGTTTTGTATGTGTTAATCCTAGGGTCTAATATCTCAAAAGGTGGCAGGCTGCGTTACTGACCTTGACTTGTATCTATGCTATCATTTTATAATTTATCATGGAAACTAGGTATCTTATAGAAATAGATGAAATTATGAAAAATAAGAGTGATTAAATTGGTATTTACATAATAAGTTTATGCTAACCATCTATTTGAATATATGGTTTGTTGCAGGTAGGAGGTGGGGGAATCGTGAGAGATCCACAGGTTCACCAGGAGGTTATCTTTTTATTCCTTGATAATTTGATGGTTTATTCCTTTTTACCCTGTTTAGAGAGAGAATTCACTTTTAAAAACCCTTGAAATCTCAAATAAACTTAAAAAAGGAGGCTTCAAAGGTACCTTTAAGTTCTTAAAATATGCTGATTTTCAAAATGTTTTGAAGAAGTTCAGAAAACAAAGAAAATGTTAGTAAACAATGTAATCTTGAAAAAACAAAAATAACAGCCTTAAATAGTGAAAAAGGGATAATTTCGTCTACTATGATTAATTTGTTGACAGGGAATGGAACGGATATTAATTTCTTCAATTGTTGTATAATCAATGTATGTGTAGGTTCTTGAGAAGATCATAAATGGAGTGGAAAATTTTGGATTCTGCAGCAAAGGTTGGATTGAATCACCATTGAAGGGCGCTGAGGGCAATACAGAATTTTTGGTTTGTTTTACCAGAACAACAGTTTCTATTGCAAACCAAGAATGATTGTTCAACTAGTTTCTACTGTTTAATCTCTGTAATTCATTTCATACAATGATTCTTCATCTTGTTTTCACTTATTTAATATAGAGTAGTCATACTTTTAAACAAGTCTAAAAATATTCATGCA

mRNA sequence

CTTCGTTCTCTCCGACTTTCTCTCGTTTCTTCTTTTCAACACCAAAATCCAATCGCCCCATAACTTTTCGAAAAATCCAATGCTTCATTTTTGTGTATAAATTTCAAACATCACAGTATACAATTCGATAGCTAGGCGCATATTTCGCTACAAGAGCTTCGAGACTCTCCTTTGAATAAGCAGTAGAATTTACAGAATCGTGTGAAGAACTAGAATCCGATGATGTCGAAGTGCGTCCTGAATCGGAATCATTTCGCAAGAATTTTCCTCTTTTCGCCGTTATCTTGCTCGCCGATCAATTCCCTTTCTCCCAAACCCTTTTCCGTCGCCAGGTCGGGAAAGATTCAGATTCAGTCACTGAATCTGAAAAACAAGAAGAGATTGGACGAGATATGTGTAGAAAGGTACCAGCAATACAGCCGCACAATCATCCAATCCTGGATATTACAAGGTAAAGTATTGGTGGATGGAAAAGTAGTCTGTAAAGCTGGAACGCCCGTCGGCGATAAAGCTAGGGTTGAGATTATTGCTGAAGTTCCGAAATATGTATGTAGAGCAGGGTTCAAGTTGGAAGCTGCCATTGAACAGTTGGGTGTTGATGTTGATGATAAAGTTGCTCTTGATGCTGGATTATCCAGTGGAGGATTTACTGACTGTTTGCTTCAGCATGGGGCTTCATTTGTCTATGGAGTTGATGTTGGCTATGGACAGGTTGCTGACAAGATTCGTCGAGATGAACGTGTTTGTGTGATGGAAAGGACAAACTTAAGATATCTTACTGGACTTCCTCAAAAAGTTGATATTGTGACTTTGGACCTTTCTTTCATTTCTATTCTCTTGGTCATGCCTGCTGTGGTCAATGTAATGAAGGAAACGTCAACAATTGTTACGTTGGTGAAACCTCAATTTGAATGTCGCAGATCACAAGTAGGAGGTGGGGGAATCGTGAGAGATCCACAGGTTCACCAGGAGGTTCTTGAGAAGATCATAAATGGAGTGGAAAATTTTGGATTCTGCAGCAAAGGTTGGATTGAATCACCATTGAAGGGCGCTGAGGGCAATACAGAATTTTTGGTTTGTTTTACCAGAACAACAGTTTCTATTGCAAACCAAGAATGATTGTTCAACTAGTTTCTACTGTTTAATCTCTGTAATTCATTTCATACAATGATTCTTCATCTTGTTTTCACTTATTTAATATAGAGTAGTCATACTTTTAAACAAGTCTAAAAATATTCATGCA

Coding sequence (CDS)

ATGATGTCGAAGTGCGTCCTGAATCGGAATCATTTCGCAAGAATTTTCCTCTTTTCGCCGTTATCTTGCTCGCCGATCAATTCCCTTTCTCCCAAACCCTTTTCCGTCGCCAGGTCGGGAAAGATTCAGATTCAGTCACTGAATCTGAAAAACAAGAAGAGATTGGACGAGATATGTGTAGAAAGGTACCAGCAATACAGCCGCACAATCATCCAATCCTGGATATTACAAGGTAAAGTATTGGTGGATGGAAAAGTAGTCTGTAAAGCTGGAACGCCCGTCGGCGATAAAGCTAGGGTTGAGATTATTGCTGAAGTTCCGAAATATGTATGTAGAGCAGGGTTCAAGTTGGAAGCTGCCATTGAACAGTTGGGTGTTGATGTTGATGATAAAGTTGCTCTTGATGCTGGATTATCCAGTGGAGGATTTACTGACTGTTTGCTTCAGCATGGGGCTTCATTTGTCTATGGAGTTGATGTTGGCTATGGACAGGTTGCTGACAAGATTCGTCGAGATGAACGTGTTTGTGTGATGGAAAGGACAAACTTAAGATATCTTACTGGACTTCCTCAAAAAGTTGATATTGTGACTTTGGACCTTTCTTTCATTTCTATTCTCTTGGTCATGCCTGCTGTGGTCAATGTAATGAAGGAAACGTCAACAATTGTTACGTTGGTGAAACCTCAATTTGAATGTCGCAGATCACAAGTAGGAGGTGGGGGAATCGTGAGAGATCCACAGGTTCACCAGGAGGTTCTTGAGAAGATCATAAATGGAGTGGAAAATTTTGGATTCTGCAGCAAAGGTTGGATTGAATCACCATTGAAGGGCGCTGAGGGCAATACAGAATTTTTGGTTTGTTTTACCAGAACAACAGTTTCTATTGCAAACCAAGAATGA

Protein sequence

MMSKCVLNRNHFARIFLFSPLSCSPINSLSPKPFSVARSGKIQIQSLNLKNKKRLDEICVERYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRAGFKLEAAIEQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERTNLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGGIVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCFTRTTVSIANQE

Homology

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BLAST of Sed0009827 vs. NCBI nr
Match: XP_038899562.1 (putative rRNA methyltransferase YqxC [Benincasa hispida])

HSP 1 Score: 533.9 bits (1374), Expect = 9.0e-148
Identity = 271/298 (90.94%), Postives = 281/298 (94.30%), Query Frame = 0


Query: 2   MSKCVLNRNHFARIFLFSPLSCSPINSLSPKPFSVARSGKIQIQSLNLKNKKRLDEICVE 61
           MSKC+L+RN+ ARIFL SPLS SPI S SPK FSVA+SGK  I SLNLK KKRLDE+CVE
Sbjct: 1   MSKCILSRNNCARIFLLSPLSSSPIQSASPKAFSVAKSGK--ILSLNLKKKKRLDEVCVE 60

Query: 62  RYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRAGFKLEAAI 121
           RYQQYSRT+IQSWILQGKVLVDGKV+ KAGTPVGDKA+VEIIAEVPKYVCRAG KLEAAI
Sbjct: 61  RYQQYSRTMIQSWILQGKVLVDGKVISKAGTPVGDKAKVEIIAEVPKYVCRAGLKLEAAI 120

Query: 122 EQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 181
           EQLGVDVD KVALDAGLS+GGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT
Sbjct: 121 EQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 180

Query: 182 NLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 241
           NLRYL GLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG
Sbjct: 181 NLRYLAGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 240

Query: 242 IVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCFTRTTVSIANQE 300
           IVRDPQVHQEVLEKII GVENFGFCSKGWIESPLKGAEGNTEFLVCF RTTVS +NQE
Sbjct: 241 IVRDPQVHQEVLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVCFDRTTVSTSNQE 296

[Close]

BLAST of Sed0009827 vs. NCBI nr
Match: XP_023513431.1 (uncharacterized protein LOC111778052 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 529.6 bits (1363), Expect = 1.7e-146
Identity = 269/298 (90.27%), Postives = 282/298 (94.63%), Query Frame = 0


Query: 2   MSKCVLNRNHFARIFLFSPLSCSPINSLSPKPFSVARSGKIQIQSLNLKNKKRLDEICVE 61
           MSKC+L+RN+FARIFL SP +C  I+S SPK FSVA+ GK  IQSLNLK KKRLDE+CVE
Sbjct: 1   MSKCLLSRNNFARIFLVSPPTCCRIHSASPKAFSVAKPGK--IQSLNLKKKKRLDEMCVE 60

Query: 62  RYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRAGFKLEAAI 121
           RYQQYSRTIIQSWILQGKVLVDGKVV KAGTPVGDKA+VEIIAEVPKYVCRAGFKLEAAI
Sbjct: 61  RYQQYSRTIIQSWILQGKVLVDGKVVSKAGTPVGDKAKVEIIAEVPKYVCRAGFKLEAAI 120

Query: 122 EQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 181
           EQLGVDVD KVALDAGLS+GGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT
Sbjct: 121 EQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 180

Query: 182 NLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 241
           NLRYL GLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGG G
Sbjct: 181 NLRYLAGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGKG 240

Query: 242 IVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCFTRTTVSIANQE 300
           IVRDPQVHQEVL+KII GVE+FGFCSKGWIESPLKGAEGNTEFLVCFTRTT+S ANQ+
Sbjct: 241 IVRDPQVHQEVLDKIIKGVESFGFCSKGWIESPLKGAEGNTEFLVCFTRTTLSAANQD 296

[Close]

BLAST of Sed0009827 vs. NCBI nr
Match: XP_023004131.1 (uncharacterized protein LOC111497556 [Cucurbita maxima])

HSP 1 Score: 529.3 bits (1362), Expect = 2.2e-146
Identity = 268/298 (89.93%), Postives = 283/298 (94.97%), Query Frame = 0


Query: 2   MSKCVLNRNHFARIFLFSPLSCSPINSLSPKPFSVARSGKIQIQSLNLKNKKRLDEICVE 61
           MSKC+L+RN+FARIFL SP +C  I+S SPK FSVA+SGK  IQSLNLK KKRLDE+CVE
Sbjct: 1   MSKCLLSRNNFARIFLVSPPNCCRIHSASPKAFSVAKSGK--IQSLNLKKKKRLDEMCVE 60

Query: 62  RYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRAGFKLEAAI 121
           RYQQYSRTIIQSWILQGKVLVDGKVV KAGTPVGDKA+VEIIAEVPKYVCRAGFKLEAAI
Sbjct: 61  RYQQYSRTIIQSWILQGKVLVDGKVVSKAGTPVGDKAKVEIIAEVPKYVCRAGFKLEAAI 120

Query: 122 EQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 181
           EQLGVDVD KVALDAGLS+GGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT
Sbjct: 121 EQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 180

Query: 182 NLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 241
           NLR+L G+PQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGG G
Sbjct: 181 NLRHLAGVPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGKG 240

Query: 242 IVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCFTRTTVSIANQE 300
           +VRDPQVHQEVLEKII GVE+FGFCSKGWIESPLKGAEGNTEFLVCFTRTT+S ANQ+
Sbjct: 241 VVRDPQVHQEVLEKIIKGVESFGFCSKGWIESPLKGAEGNTEFLVCFTRTTLSAANQD 296

[Close]

BLAST of Sed0009827 vs. NCBI nr
Match: XP_022960528.1 (uncharacterized protein LOC111461240 isoform X1 [Cucurbita moschata])

HSP 1 Score: 528.1 bits (1359), Expect = 5.0e-146
Identity = 271/299 (90.64%), Postives = 283/299 (94.65%), Query Frame = 0


Query: 2   MSKCVLNRNHFARIFLFSPLSCSPINSLSPKPFSVARSGKIQIQSLNLKNKKRLDEICVE 61
           MSKC+L+RN+FARIFL SP +C  I+S SPK FSVA+SGK  IQSLNLK KKRLDE+CVE
Sbjct: 1   MSKCLLSRNNFARIFLVSPPTCCRIHSASPKAFSVAKSGK--IQSLNLKKKKRLDEMCVE 60

Query: 62  RYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRAGFKLEAAI 121
           RYQQYSRTIIQSWILQGKVLVDGKVV KAGTPVGDKA+VEIIAEVPKYVCRAGFKLEAAI
Sbjct: 61  RYQQYSRTIIQSWILQGKVLVDGKVVSKAGTPVGDKAKVEIIAEVPKYVCRAGFKLEAAI 120

Query: 122 EQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 181
           EQLGVDVD KVALDAGLS+GGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT
Sbjct: 121 EQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 180

Query: 182 NLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 241
           NLRYL GLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGG G
Sbjct: 181 NLRYLAGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGKG 240

Query: 242 IVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCFTR-TTVSIANQE 300
           IVRDPQVHQEVLEKII GVE+FGFCSKGWIESPLKGAEGNTEFLVCFTR TT+S ANQ+
Sbjct: 241 IVRDPQVHQEVLEKIIKGVESFGFCSKGWIESPLKGAEGNTEFLVCFTRTTTLSAANQD 297

[Close]

BLAST of Sed0009827 vs. NCBI nr
Match: KAG7025446.1 (yqxC [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 525.8 bits (1353), Expect = 2.5e-145
Identity = 269/299 (89.97%), Postives = 282/299 (94.31%), Query Frame = 0


Query: 2   MSKCVLNRNHFARIFLFSPLSCSPINSLSPKPFSVARSGKIQIQSLNLKNKKRLDEICVE 61
           MSKC+L+RN+FARIFL SP +C  I+S SPK FS A+SGK  IQSLNLK KKRLDE+CVE
Sbjct: 1   MSKCLLSRNNFARIFLVSPPTCCRIHSASPKAFSFAKSGK--IQSLNLKKKKRLDEMCVE 60

Query: 62  RYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRAGFKLEAAI 121
           RYQQYSRTIIQSWILQGKVLVDGKVV KAGTPVGDKA+VEIIAEVPKYVCRAGFKLEAAI
Sbjct: 61  RYQQYSRTIIQSWILQGKVLVDGKVVSKAGTPVGDKAKVEIIAEVPKYVCRAGFKLEAAI 120

Query: 122 EQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 181
           EQLGVDVD KVALDAGLS+GGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT
Sbjct: 121 EQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 180

Query: 182 NLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 241
           NLRYL GLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGG G
Sbjct: 181 NLRYLAGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGKG 240

Query: 242 IVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCFTR-TTVSIANQE 300
           +VRDPQVHQEVLEKII GVE+FGFCSKGWIESPLKGAEGNTEFLVCFTR TT+S ANQ+
Sbjct: 241 VVRDPQVHQEVLEKIIKGVESFGFCSKGWIESPLKGAEGNTEFLVCFTRTTTLSAANQD 297

[Close]

BLAST of Sed0009827 vs. ExPASy Swiss-Prot
Match: P19672 (Putative rRNA methyltransferase YqxC OS=Bacillus subtilis (strain 168) OX=224308 GN=yqxC PE=3 SV=3)

HSP 1 Score: 182.6 bits (462), Expect = 6.7e-45
Identity = 104/241 (43.15%), Postives = 146/241 (60.58%), Query Frame = 0


Query: 52  KKRLDEICVERYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVC 111
           K+RLD + VER    +R   +  I+ G V  +   + K G  +     + +     +YV 
Sbjct: 5   KERLDVLLVERGLAETREKAKRAIMAGIVYSNENRLDKPGEKIDRDLPLTVKGNPLRYVS 64

Query: 112 RAGFKLEAAIEQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRR 171
           R G KLE A+++  V V DK+ +D G S+GGFTDC LQ+GA   Y VDVGY Q+A K+R+
Sbjct: 65  RGGLKLEKALKEFPVSVKDKIMIDIGSSTGGFTDCALQNGAKQSYAVDVGYNQLAWKLRQ 124

Query: 172 DERVCVMERTNLRYLT------GLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTL 231
           DERV VMERTN RY T      G+P   +  T+D+SFIS+ L++P +  ++   S  + L
Sbjct: 125 DERVVVMERTNFRYATPADFTKGMP---EFATIDVSFISLRLILPVLRTLLVPGSDCMAL 184

Query: 232 VKPQFECRRSQVGGGGIVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFL 287
           VKPQFE  R  VG  GIVRDP+VH +VL+++I+     G+  KG   SP+ G +GN EFL
Sbjct: 185 VKPQFEAGRESVGKKGIVRDPKVHADVLKRMISFSAAEGYICKGLSFSPITGGDGNIEFL 242

[Close]

BLAST of Sed0009827 vs. ExPASy Swiss-Prot
Match: P9WJ62 (16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=tlyA PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.5e-39
Identity = 97/241 (40.25%), Postives = 132/241 (54.77%), Query Frame = 0


Query: 49  LKNKKRLDEICVERYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPK 108
           +  + R+D   V R    SR      I  GKV +DG    K  T V D   + ++ +  +
Sbjct: 1   MARRARVDAELVRRGLARSRQQAAELIGAGKVRIDGLPAVKPATAVSDTTALTVVTDSER 60

Query: 109 -YVCRAGFKLEAAIEQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVAD 168
            +V R   KL  A+E   + V  +  LDAG S+GGFT+ LL  GA+ V   DVGYGQ+A 
Sbjct: 61  AWVSRGAHKLVGALEAFAIAVAGRRCLDAGASTGGFTEVLLDRGAAHVVAADVGYGQLAW 120

Query: 169 KIRRDERVCVMERTNLRYLT--GLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTL 228
            +R D RV V+ERTN R LT   +  +VD+V  DLSFIS+  V+PA+V      + IV L
Sbjct: 121 SLRNDPRVVVLERTNARGLTPEAIGGRVDLVVADLSFISLATVLPALVGCASRDADIVPL 180

Query: 229 VKPQFECRRSQVGGGGIVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFL 287
           VKPQFE  + QVG GG+V DPQ+    +  +    +  G+ S G   SPL G  GN E+ 
Sbjct: 181 VKPQFEVGKGQVGPGGVVHDPQLRARSVLAVARRAQELGWHSVGVKASPLPGPSGNVEYF 240

[Close]

BLAST of Sed0009827 vs. ExPASy Swiss-Prot
Match: P9WJ63 (16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=tlyA PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.5e-39
Identity = 97/241 (40.25%), Postives = 132/241 (54.77%), Query Frame = 0


Query: 49  LKNKKRLDEICVERYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPK 108
           +  + R+D   V R    SR      I  GKV +DG    K  T V D   + ++ +  +
Sbjct: 1   MARRARVDAELVRRGLARSRQQAAELIGAGKVRIDGLPAVKPATAVSDTTALTVVTDSER 60

Query: 109 -YVCRAGFKLEAAIEQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVAD 168
            +V R   KL  A+E   + V  +  LDAG S+GGFT+ LL  GA+ V   DVGYGQ+A 
Sbjct: 61  AWVSRGAHKLVGALEAFAIAVAGRRCLDAGASTGGFTEVLLDRGAAHVVAADVGYGQLAW 120

Query: 169 KIRRDERVCVMERTNLRYLT--GLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTL 228
            +R D RV V+ERTN R LT   +  +VD+V  DLSFIS+  V+PA+V      + IV L
Sbjct: 121 SLRNDPRVVVLERTNARGLTPEAIGGRVDLVVADLSFISLATVLPALVGCASRDADIVPL 180

Query: 229 VKPQFECRRSQVGGGGIVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFL 287
           VKPQFE  + QVG GG+V DPQ+    +  +    +  G+ S G   SPL G  GN E+ 
Sbjct: 181 VKPQFEVGKGQVGPGGVVHDPQLRARSVLAVARRAQELGWHSVGVKASPLPGPSGNVEYF 240

[Close]

BLAST of Sed0009827 vs. ExPASy Swiss-Prot
Match: Q06803 (Hemolysin A OS=Brachyspira hyodysenteriae OX=159 GN=tlyA PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.2e-39
Identity = 93/238 (39.08%), Postives = 133/238 (55.88%), Query Frame = 0


Query: 54  RLDEICVERYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRA 113
           RLDE         SR+  Q  IL G V V+G  V      + D   +E++  + KYV RA
Sbjct: 2   RLDEYVHSEGYTESRSKAQDIILAGCVFVNGVKVTSKAHKIKDTDNIEVVQNI-KYVSRA 61

Query: 114 GFKLEAAIEQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDE 173
           G KLE A  + G+ V++K+ LD G S+GGFTDCLL+HGA  VY +DVG+ Q+  K+R D 
Sbjct: 62  GEKLEKAFVEFGISVENKICLDIGASTGGFTDCLLKHGAKKVYALDVGHNQLVYKLRNDN 121

Query: 174 RVCVMERTNLRYLTG---LPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQF 233
           RV  +E  N + +       +   ++  D+SFISI  + P +   +      VTL+KPQF
Sbjct: 122 RVVSIEDFNAKDINKEMFNDEIPSVIVSDVSFISITKIAPIIFKELNNLEFWVTLIKPQF 181

Query: 234 ECRRSQVGGGGIVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCF 289
           E  R  V  GGI+RD  + +++L   I+ + + GF       SP+KGA+GN E+L  F
Sbjct: 182 EAERGDVSKGGIIRDDILREKILNNAISKIIDCGFKEVNRTISPIKGAKGNIEYLAHF 238

[Close]

BLAST of Sed0009827 vs. ExPASy TrEMBL
Match: A0A6J1KR87 (uncharacterized protein LOC111497556 OS=Cucurbita maxima OX=3661 GN=LOC111497556 PE=4 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 1.1e-146
Identity = 268/298 (89.93%), Postives = 283/298 (94.97%), Query Frame = 0


Query: 2   MSKCVLNRNHFARIFLFSPLSCSPINSLSPKPFSVARSGKIQIQSLNLKNKKRLDEICVE 61
           MSKC+L+RN+FARIFL SP +C  I+S SPK FSVA+SGK  IQSLNLK KKRLDE+CVE
Sbjct: 1   MSKCLLSRNNFARIFLVSPPNCCRIHSASPKAFSVAKSGK--IQSLNLKKKKRLDEMCVE 60

Query: 62  RYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRAGFKLEAAI 121
           RYQQYSRTIIQSWILQGKVLVDGKVV KAGTPVGDKA+VEIIAEVPKYVCRAGFKLEAAI
Sbjct: 61  RYQQYSRTIIQSWILQGKVLVDGKVVSKAGTPVGDKAKVEIIAEVPKYVCRAGFKLEAAI 120

Query: 122 EQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 181
           EQLGVDVD KVALDAGLS+GGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT
Sbjct: 121 EQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 180

Query: 182 NLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 241
           NLR+L G+PQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGG G
Sbjct: 181 NLRHLAGVPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGKG 240

Query: 242 IVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCFTRTTVSIANQE 300
           +VRDPQVHQEVLEKII GVE+FGFCSKGWIESPLKGAEGNTEFLVCFTRTT+S ANQ+
Sbjct: 241 VVRDPQVHQEVLEKIIKGVESFGFCSKGWIESPLKGAEGNTEFLVCFTRTTLSAANQD 296

[Close]

BLAST of Sed0009827 vs. ExPASy TrEMBL
Match: A0A6J1H982 (uncharacterized protein LOC111461240 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461240 PE=4 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.4e-146
Identity = 271/299 (90.64%), Postives = 283/299 (94.65%), Query Frame = 0


Query: 2   MSKCVLNRNHFARIFLFSPLSCSPINSLSPKPFSVARSGKIQIQSLNLKNKKRLDEICVE 61
           MSKC+L+RN+FARIFL SP +C  I+S SPK FSVA+SGK  IQSLNLK KKRLDE+CVE
Sbjct: 1   MSKCLLSRNNFARIFLVSPPTCCRIHSASPKAFSVAKSGK--IQSLNLKKKKRLDEMCVE 60

Query: 62  RYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRAGFKLEAAI 121
           RYQQYSRTIIQSWILQGKVLVDGKVV KAGTPVGDKA+VEIIAEVPKYVCRAGFKLEAAI
Sbjct: 61  RYQQYSRTIIQSWILQGKVLVDGKVVSKAGTPVGDKAKVEIIAEVPKYVCRAGFKLEAAI 120

Query: 122 EQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 181
           EQLGVDVD KVALDAGLS+GGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT
Sbjct: 121 EQLGVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 180

Query: 182 NLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 241
           NLRYL GLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGG G
Sbjct: 181 NLRYLAGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGKG 240

Query: 242 IVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCFTR-TTVSIANQE 300
           IVRDPQVHQEVLEKII GVE+FGFCSKGWIESPLKGAEGNTEFLVCFTR TT+S ANQ+
Sbjct: 241 IVRDPQVHQEVLEKIIKGVESFGFCSKGWIESPLKGAEGNTEFLVCFTRTTTLSAANQD 297

[Close]

BLAST of Sed0009827 vs. ExPASy TrEMBL
Match: A0A0A0KA33 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G368230 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.0e-145
Identity = 266/298 (89.26%), Postives = 280/298 (93.96%), Query Frame = 0


Query: 2   MSKCVLNRNHFARIFLFSPLSCSPINSLSPKPFSVARSGKIQIQSLNLKNKKRLDEICVE 61
           M KC+L+RN+ ARIFLFSPLS SPI+S SPK FSVA+SGK  IQSL LK K+RLDE+CVE
Sbjct: 1   MFKCLLSRNNCARIFLFSPLSSSPIHSPSPKAFSVAKSGK--IQSLTLKKKRRLDEVCVE 60

Query: 62  RYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRAGFKLEAAI 121
           RYQQ+SRT+IQSWILQGKVLVDGKV+ KAGTPV DKA+VEIIAEVPKYVCRAG KLEAAI
Sbjct: 61  RYQQFSRTMIQSWILQGKVLVDGKVISKAGTPVADKAKVEIIAEVPKYVCRAGLKLEAAI 120

Query: 122 EQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 181
           EQL VDVD KVALDAGLS+GGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT
Sbjct: 121 EQLDVDVDGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 180

Query: 182 NLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 241
           NLRYL GLPQKVDIVTLDLSFISILLVMPAV+NVMKETSTIVTLVKPQFECRRSQVGGGG
Sbjct: 181 NLRYLAGLPQKVDIVTLDLSFISILLVMPAVINVMKETSTIVTLVKPQFECRRSQVGGGG 240

Query: 242 IVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCFTRTTVSIANQE 300
           IVRDPQVHQEVLEKII GVENFGFCSKGWIESPLKGAEGNTEFLVCF RTTVS +NQE
Sbjct: 241 IVRDPQVHQEVLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVCFDRTTVSTSNQE 296

[Close]

BLAST of Sed0009827 vs. ExPASy TrEMBL
Match: A0A5D3BCA3 (Putative rRNA methyltransferase YqxC isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00050 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 3.8e-144
Identity = 265/298 (88.93%), Postives = 279/298 (93.62%), Query Frame = 0


Query: 2   MSKCVLNRNHFARIFLFSPLSCSPINSLSPKPFSVARSGKIQIQSLNLKNKKRLDEICVE 61
           MSKC+L+RN+ ARI LFSP S SPI+S SPK FSVA+SGK  IQSL LK K+RLDE+CVE
Sbjct: 1   MSKCLLSRNNCARILLFSPPSTSPIHSPSPKAFSVAKSGK--IQSLTLKKKRRLDEVCVE 60

Query: 62  RYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRAGFKLEAAI 121
           RYQQ+SRT+IQSWILQGKVLVDGKV+ KAGTPV DKA+VEIIAEVPKYVCRAG KLEAAI
Sbjct: 61  RYQQFSRTMIQSWILQGKVLVDGKVISKAGTPVADKAKVEIIAEVPKYVCRAGLKLEAAI 120

Query: 122 EQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 181
           EQL VDV+ KVALDAGLS+GGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT
Sbjct: 121 EQLDVDVNGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 180

Query: 182 NLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 241
           NLRYL GLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG
Sbjct: 181 NLRYLAGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 240

Query: 242 IVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCFTRTTVSIANQE 300
           IVRDPQVHQEVLEKII GVENFGFCSKGWIESPLKGAEGNTEFLVCF RTTVS +NQE
Sbjct: 241 IVRDPQVHQEVLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVCFDRTTVSTSNQE 296

[Close]

BLAST of Sed0009827 vs. ExPASy TrEMBL
Match: A0A1S3C7N4 (putative rRNA methyltransferase YqxC isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497628 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 3.8e-144
Identity = 265/298 (88.93%), Postives = 279/298 (93.62%), Query Frame = 0


Query: 2   MSKCVLNRNHFARIFLFSPLSCSPINSLSPKPFSVARSGKIQIQSLNLKNKKRLDEICVE 61
           MSKC+L+RN+ ARI LFSP S SPI+S SPK FSVA+SGK  IQSL LK K+RLDE+CVE
Sbjct: 1   MSKCLLSRNNCARILLFSPPSTSPIHSPSPKAFSVAKSGK--IQSLTLKKKRRLDEVCVE 60

Query: 62  RYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPKYVCRAGFKLEAAI 121
           RYQQ+SRT+IQSWILQGKVLVDGKV+ KAGTPV DKA+VEIIAEVPKYVCRAG KLEAAI
Sbjct: 61  RYQQFSRTMIQSWILQGKVLVDGKVISKAGTPVADKAKVEIIAEVPKYVCRAGLKLEAAI 120

Query: 122 EQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 181
           EQL VDV+ KVALDAGLS+GGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT
Sbjct: 121 EQLDVDVNGKVALDAGLSTGGFTDCLLQHGASFVYGVDVGYGQVADKIRRDERVCVMERT 180

Query: 182 NLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 241
           NLRYL GLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG
Sbjct: 181 NLRYLAGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKPQFECRRSQVGGGG 240

Query: 242 IVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCFTRTTVSIANQE 300
           IVRDPQVHQEVLEKII GVENFGFCSKGWIESPLKGAEGNTEFLVCF RTTVS +NQE
Sbjct: 241 IVRDPQVHQEVLEKIIKGVENFGFCSKGWIESPLKGAEGNTEFLVCFDRTTVSTSNQE 296

[Close]

BLAST of Sed0009827 vs. TAIR 10
Match: AT3G25470.1 (bacterial hemolysin-related )

HSP 1 Score: 375.2 bits (962), Expect = 5.0e-104
Identity = 186/251 (74.10%), Postives = 216/251 (86.06%), Query Frame = 0


Query: 50  KNKK-RLDEICVERYQQYSRTIIQSWILQGKVLVDGKVVCKAGTPVGDKARVEIIAEVPK 109
           KNKK RLDE CVER+ +YSRT+IQSWI+QGKVLVDG+ V KAG PV   A ++I AEVPK
Sbjct: 51  KNKKQRLDEACVERFNEYSRTLIQSWIMQGKVLVDGRRVIKAGMPVSTTAAIKITAEVPK 110

Query: 110 YVCRAGFKLEAAIEQLGVDVDDKVALDAGLSSGGFTDCLLQHGASFVYGVDVGYGQVADK 169
           +VCR G KLEAA+E+L VDV +KV LDAGLS+GGFTDCLL++GA+ VYGVDVGYGQVADK
Sbjct: 111 FVCRGGLKLEAALEKLDVDVSEKVVLDAGLSTGGFTDCLLRYGAAHVYGVDVGYGQVADK 170

Query: 170 IRRDERVCVMERTNLRYLTGLPQKVDIVTLDLSFISILLVMPAVVNVMKETSTIVTLVKP 229
           IR D++V V+ERTNLRYL GLPQKVD+VTLDLSFISIL VMPA++NVMKE +T+VTLVKP
Sbjct: 171 IRNDKKVTVIERTNLRYLPGLPQKVDVVTLDLSFISILKVMPAIMNVMKEDATLVTLVKP 230

Query: 230 QFECRRSQVGGGGIVRDPQVHQEVLEKIINGVENFGFCSKGWIESPLKGAEGNTEFLVCF 289
           QFE RR QVG GGIVRDP+VHQEVLEKIINGVE +GF +KG+IESP+KGA+GN EFL CF
Sbjct: 231 QFEARRQQVGKGGIVRDPEVHQEVLEKIINGVERYGFTNKGFIESPIKGADGNIEFLACF 290

Query: 290 TRTTVSIANQE 300
            R TV    +E
Sbjct: 291 NRGTVKPEAEE 301

The following BLAST results are available for this feature:

BLAST of Sed0009827 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899562.1	9.0e-148	90.94	putative rRNA methyltransferase YqxC [Benincasa hispida]	[more]
XP_023513431.1	1.7e-146	90.27	uncharacterized protein LOC111778052 [Cucurbita pepo subsp. pepo]	[more]
XP_023004131.1	2.2e-146	89.93	uncharacterized protein LOC111497556 [Cucurbita maxima]	[more]
XP_022960528.1	5.0e-146	90.64	uncharacterized protein LOC111461240 isoform X1 [Cucurbita moschata]	[more]
KAG7025446.1	2.5e-145	89.97	yqxC [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Sed0009827 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19672	6.7e-45	43.15	Putative rRNA methyltransferase YqxC OS=Bacillus subtilis (strain 168) OX=224308...	[more]
P9WJ62	2.5e-39	40.25	16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA OS=Mycobacterium tuberculosi...	[more]
P9WJ63	2.5e-39	40.25	16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA OS=Mycobacterium tuberculosi...	[more]
Q06803	3.2e-39	39.08	Hemolysin A OS=Brachyspira hyodysenteriae OX=159 GN=tlyA PE=2 SV=1	[more]

BLAST of Sed0009827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KR87	1.1e-146	89.93	uncharacterized protein LOC111497556 OS=Cucurbita maxima OX=3661 GN=LOC111497556...	[more]
A0A6J1H982	2.4e-146	90.64	uncharacterized protein LOC111461240 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0KA33	2.0e-145	89.26	S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G368...	[more]
A0A5D3BCA3	3.8e-144	88.93	Putative rRNA methyltransferase YqxC isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C7N4	3.8e-144	88.93	putative rRNA methyltransferase YqxC isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Sed0009827 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25470.1	5.0e-104	74.10	bacterial hemolysin-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 53..118 e-value: 2.7E-8 score: 43.5
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 54..97 e-value: 1.7E-8 score: 34.1
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 53..102 e-value: 2.43971E-8 score: 48.0146
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 104..299 e-value: 1.7E-75 score: 254.8
None	No IPR available	PANTHER	PTHR32319	BACTERIAL HEMOLYSIN-LIKE PROTEIN	coord: 50..294
None	No IPR available	PROSITE	PS50889	S4	coord: 53..113 score: 12.214573
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 49..105
IPR002877	Ribosomal RNA methyltransferase FtsJ domain	PFAM	PF01728	FtsJ	coord: 109..288 e-value: 8.7E-19 score: 68.3
IPR004538	Haemolysin A /rRNA methyltransferase TlyA	PIRSF	PIRSF005578	TlyA	coord: 48..299 e-value: 1.5E-98 score: 326.8
IPR004538	Haemolysin A /rRNA methyltransferase TlyA	TIGRFAM	TIGR00478	TIGR00478	coord: 54..283 e-value: 3.0E-66 score: 221.0
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 47..103 e-value: 2.5E-15 score: 57.7
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 109..289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009827.1	Sed0009827.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003723	RNA binding