Sed0009794 (gene) Chayote v1

Overview


Name	Sed0009794
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP-dependent Clp protease adapter protein ClpS
Location	LG06: 43078719 .. 43082326 (+)
RNA-Seq Expression	Sed0009794
Synteny	Sed0009794

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTCTAACAATCAAAAGAAATATTTCGAATCCGAATCGATTTGCTGTTTCTGATTTACGAGAGAAGAATTCATGGAGATTGCGATTTATGGAAAATTAGTTCCCTCACCCAACCATGTATTCAACTCCAAACCAGGTACCAGTTTTAATCACTTTTTTTTTTTCTTCATTATTAATCATAAAATCGTCTCTGTTTTTGTATTTTTTTTTTTTTTTTTTACTGATTTTGATCCGCCATTACTGATTCCTCGAGAAACCCCACATATATCATCTTTTCGTTTTATTTCCTAAGTGGGTTTGGCTTCAATTCTGGTTTTAATATTGTAATCCCAATTAAAATTGATATATGAACAAGTGTATTAGTTTTTACTAATATATTTTATGATCTTAATTGGTTGTGCCCTGCTGGTATGTTTGTTTGTTTGGAATAATTTGATAGACCAGCAATGGTAAGGCATGTACCTTAAAACCAAAAAGTGCAATATAATTTTTTTGTGGAAAAGGATTTTCTCTGTGCAGTGTATATATATATATATATTAGGGGTGCACAAAAAACCAGTAAATCACAACAACTTGGAGTGCCCAACCTAAATTATAAGAATTGGGTTGGGTTATAACTAAGAATATATTGTATATATTATGGTAGATTTTTAGCATATTATATATATATATATTATGTATGTATATATATATATATTATGTGTGTATGTAATATAAATTAATAAGTTAGATTTTTAGCATACTTGTAAGCCTTCTAAAAAAATATTATGCACTAATAAGATTGGTAATAAGTTGAAGTACAGTATCATCTATCTTTTTTAACATATTTATGAACTTATGAACTAAATTTTAGAGAGAAAAATGAAAATAATATAACCCGAAAATCCAACCCAACTCCCGGGGTTGGGTTGCGCTTATGCATAGGGTTGAACGAGTTGGCGAATTGACCCACCCAAAAAGTTGGATTGGTCCAAAAAATTCATTCAACTCTATCCAACCCGGACCATATACATCCCTAATATATATATATATATATATATATTATTTTTATTTTTATTTTTATTTTTATTTTTATTTTTTTTTGGTGCAATATTTTTCATTGTTCAAGAATCTTCTGTTCTTTGGCATCTTCCTTGTGCTAAATTTATAAAACAATAGGTCGCCTTTATTTTATCCTAGCATATGGTATCTCACTTCATTTTCCCATCTTACGGTTATTTTCAATCATTTTTTTACTTTGCTTTATTAGCTTTTCCTTTTTATTTTGTTTATTTTGTTTTTTTTTTTTTTTTTTTTTTTTGCTTATGGCTCAGTTCTCAATCACGTTGGAAGTGTTGAGGATCCACGTTGAAAATGTGAGGAAACCGCCTAGTATTTATATGAGCTACTCATCTCATTTCCCATTGAATTTTAGATGGAGCTTCATACTATCTTAAATGGTATCAGAGCCTATTAAATCAATGGATATTCGGGCCATTAAAACTGAAATTGAGTTTCAATCATAGATTGATAAATCCAAAGATGCAAGATGAGAAGGTACGTTGAGGATCTCACATTAGAAATGTGGGAAAATCTCCTAACATTTATAAGATAGATGAACTTCTCCTCTCATTGTCAATTGGTTTTGAGATAGAATCTCAAACGATCTAACAAGAAGCTCCATTGTCTTTTGCTATGAATGAACCAGTTTACTTTCTATTCTTTTGAGGATTAAGATTACATTTATTGTTTTATTGTTTCCATTGCTTTATTTGCTTTGCTATATTTATATAATTAATATTATTCTCATTTTCCGAACTGCAGCATTATGACTGGATTAGCAATGAATAATATGAGCTTCTTATAAAAGTTTCATTTCAGGGGACAGAAGTTCTCTGTGTAAAGGACAGAAGTTCTCGGTTGTTAAATCAGCCACAACAGCAGGAATAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCTACTCCTGGAAGAGAATCTGAGTTTGATTTGAGGTACTAAACATTTGACAAGTATGGTTATGTACTGAAAAGACTAGTATATACTGAACTAGAAAATAGGACAATGAAAGAATAAAGCATACCAGGTAAAGCCCCGAAAGAGATGGAAAGATTTTTCGGTGTAGGGTCATCCGAAGACCTACGATTAGATATTTTTTCGCTATCTTTACGATTTGATTTCTAATTCAGGACTACTACTCTGACACAATGTGTCTCTTTATGAATTACTAACCTTACATGTATGAATTACTTTGTGTCGCCAAGGCAATAACTTGGATGACTTTAGAGACGGGGTCATCTTATTAACTATGACATGTTGAAATTTATATGAAACGTAGCATTCATTTTTGGAGTTGATCTTTGTTCTTATACCTTTAGTTTAATATACTGACTTTTGTATTCTGATTACTATATGAATGGCATTAAAAGGATTGCAGTTGAAGTAGAGGAGGAAAAAGGAGTGGTATGAGCCTGAATTGCAATGATGGAAAATCACTGATTTTTCTTCCTTTGAACGTACAAATGAAACCGAGTGGCTAACTCCAATCCTTACAATGACCTGTTACATGCATAAAGTCCCAAAACAAGTACAAAATATGGATATTGACTCGAGTTATCGAATGTTCTTCGACACTCCGTGATGATATAGCATTAACATCAACAAGATAGCAACAAAGTAATAACAAGATAACGAAAGAATGACAAACCTGGTGTATTCGAGAGCACTGGTTCTCTCCCACTCCTCTAAGGACTAAACCTTACCAAAATAACTAGCTACCCTCCAACCCTAATCTCTTATTTATATCCACTATACCTCTCCTATGACAAGAATAACCACTGCCCATTAGCTACCTGTTCTCTCCAAAATAACTATTTTTGTCCTTCTAAAATGTGTATTGATATTTGAGGTCCTAACACTAAGTTCTTGCCTAGGCAGACTTATGGTTATTAGCTGATGATTAAGTTAGTTTTGACTGCTTCATTGTACATCTTGTTTCTGAATAAATGCGCTGATTTCAGTGTTCTCTGTTGGATAGTTCCTTTGCATAGAACAAAACATCAGATATGAACTGATCATTCTAGACCAATGAAATTGTTCAGGAGATCAAGGAAAACGACGCCACCATATCGTGTCATTCTGCATAATGACGACTTCAATAAACGGGAATACGTCGTTCAAGTCCTGATGAAAGTCATCCCCAAATTGACGGTCGACACTGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCCCTGGTGATCATTTGTGCTCAGGCCGATGCTGAAGAACACTGCATGAAGCTTAGAGGCAATGGGCTGTTAAGTTCAATTGAGCCTACAAGTGGTGGGTGCTGTTAAGCCTTTTCATCATTGGATTATACATTTATATGTATTCAAGCTAGGATGGGACTCAAAAGAAACTGGTATGTAAGTATTGAAAAACTCCTATGATATTTTGCTTGTTTTGGGAGTAGAAAAACTCTCTTTTGCTCATCTTCTTTGATTATTTTAATTGTGTTTGGAGATTTGTATAGGAAAAAACTATCCACATTGATTGACGTGATGAACTATTAACAGAGAAAATTATGTTAATG

mRNA sequence

AATCTCTAACAATCAAAAGAAATATTTCGAATCCGAATCGATTTGCTGTTTCTGATTTACGAGAGAAGAATTCATGGAGATTGCGATTTATGGAAAATTAGTTCCCTCACCCAACCATGTATTCAACTCCAAACCAGGGGACAGAAGTTCTCTGTGTAAAGGACAGAAGTTCTCGGTTGTTAAATCAGCCACAACAGCAGGAATAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCTACTCCTGGAAGAGAATCTGAGTTTGATTTGAGGAGATCAAGGAAAACGACGCCACCATATCGTGTCATTCTGCATAATGACGACTTCAATAAACGGGAATACGTCGTTCAAGTCCTGATGAAAGTCATCCCCAAATTGACGGTCGACACTGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCCCTGGTGATCATTTGTGCTCAGGCCGATGCTGAAGAACACTGCATGAAGCTTAGAGGCAATGGGCTGTTAAGTTCAATTGAGCCTACAAGTGGTGGGTGCTGTTAAGCCTTTTCATCATTGGATTATACATTTATATGTATTCAAGCTAGGATGGGACTCAAAAGAAACTGGTATGTAAGTATTGAAAAACTCCTATGATATTTTGCTTGTTTTGGGAGTAGAAAAACTCTCTTTTGCTCATCTTCTTTGATTATTTTAATTGTGTTTGGAGATTTGTATAGGAAAAAACTATCCACATTGATTGACGTGATGAACTATTAACAGAGAAAATTATGTTAATG

Coding sequence (CDS)

ATGGAGATTGCGATTTATGGAAAATTAGTTCCCTCACCCAACCATGTATTCAACTCCAAACCAGGGGACAGAAGTTCTCTGTGTAAAGGACAGAAGTTCTCGGTTGTTAAATCAGCCACAACAGCAGGAATAGGAGGAGGGTTGTTGGAGAGGCCTGTTATTGAGAAAGCTACTCCTGGAAGAGAATCTGAGTTTGATTTGAGGAGATCAAGGAAAACGACGCCACCATATCGTGTCATTCTGCATAATGACGACTTCAATAAACGGGAATACGTCGTTCAAGTCCTGATGAAAGTCATCCCCAAATTGACGGTCGACACTGCAGTTAACATCATGCAAGAAGCTCACTACAATGGCTTGTCCCTGGTGATCATTTGTGCTCAGGCCGATGCTGAAGAACACTGCATGAAGCTTAGAGGCAATGGGCTGTTAAGTTCAATTGAGCCTACAAGTGGTGGGTGCTGTTAA

Protein sequence

MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQKFSVVKSATTAGIGGGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAHYNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC

Homology

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BLAST of Sed0009794 vs. NCBI nr
Match: XP_008446565.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Cucumis melo] >KAA0034534.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa] >TYK09088.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 5.1e-70
Identity = 138/159 (86.79%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQKF----SVVKSATTAGIGGGLLERPVIEK 60
           MEIAI GKL  SPNHVFN KPGDRSS+CKG  F    SVVKSA TAG GGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAH 120
           ATPGRESEFD+RRSRK TPPYRVILHNDDFNKREYVVQVLMKVIP +T+D AVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC 156
           YNGLSLVIICAQADAEEHCM+LRGNGLLSSIEP SGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

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BLAST of Sed0009794 vs. NCBI nr
Match: XP_011655763.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus])

HSP 1 Score: 271.9 bits (694), Expect = 3.3e-69
Identity = 138/159 (86.79%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQKF----SVVKSATTAGIGGGLLERPVIEK 60
           MEIAI GKL  SPNHVFN KPGDRSS+CKG  F    SVVKSA TAG GGGLLERPVIEK
Sbjct: 1   MEIAIRGKLALSPNHVFNPKPGDRSSVCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAH 120
           ATPGRESEFDLRRSRK TPPYRVILHNDDFNKREYVVQVLMKVIP +T+D AVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC 156
           YNGLSLVIICAQADAE HCM+LRGNGLLSSIEP SGGCC
Sbjct: 121 YNGLSLVIICAQADAEGHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Sed0009794 vs. NCBI nr
Match: XP_022150471.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica charantia])

HSP 1 Score: 268.5 bits (685), Expect = 3.7e-68
Identity = 134/159 (84.28%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQKFS----VVKSATTAGIGGGLLERPVIEK 60
           MEIAI GKL  SPNHVFN +PGD++ +C+G   S    +VKSATTAG GGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPQPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAH 120
           ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIP +T+D AVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC 156
           YNGLSLVIICAQADAEEHCM+LRGNGLLSSIEP SGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

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BLAST of Sed0009794 vs. NCBI nr
Match: XP_038891525.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 267.3 bits (682), Expect = 8.2e-68
Identity = 137/159 (86.16%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKG--QKF--SVVKSATTAGIGGGLLERPVIEK 60
           MEIAI GKL  SPNHVFN KPGDRSS+CKG    F  SVVKSA TAG GGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSNFGASVVKSAPTAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAH 120
           ATPGRESEFDLR+SRK TPPYRVILHNDDFNKREYVVQVLMKVIP +T+D AVNIMQEAH
Sbjct: 61  ATPGRESEFDLRKSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC 156
            NGLSLVIICAQADAEEHCM+LRGNGLLSSIEP SGGCC
Sbjct: 121 CNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

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BLAST of Sed0009794 vs. NCBI nr
Match: XP_022968529.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-67
Identity = 138/160 (86.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKG----QKFSVVKSATTAGI-GGGLLERPVIE 60
           MEIAI GKL  SPNHVFN KPGDRSS+CKG       SVVKSATTAG  GGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEA 120
           KATPGRESEFDLRRSRKTTPPYRVILHNDDFN+REYVVQVLMKVIP +T+D AVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC 156
           H NGLSLVIICAQADAEEHCM+LRGNGLLSSIEP SGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160

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BLAST of Sed0009794 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.2e-55
Identity = 106/159 (66.67%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQ--KFSVVKSATTA---GIGGGLLERPVIE 60
           ME AI G+L  +P+ +FNSK GD+  + KG     S++ + +T+   G GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEA 120
           K TPGRESEFDLR+S+K  PPYRVILHND+FNKREYVVQVLMKVIP +TVD AVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGC 155
           H NGL++VI+CAQADAE+HCM+LRGNGLLSS+EP  GGC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

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BLAST of Sed0009794 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 0


Query: 46  GGLLERPVIEKATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTV 105
           GG+++ P     T  ++    + RS+K  P Y+V+LHND++NKREYVV+VL+KV+ ++TV
Sbjct: 61  GGVMDAP-----TTTQQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 106 DTAVNIMQEAHYNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGC 155
           D AV  MQEAH  G++LV+ C Q +AE +C  LR NGL S+IEP  GGC
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEP--GGC 162

[Close]

BLAST of Sed0009794 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 71  RKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAHYNGLSLVIICAQAD 130
           RK  P YRV+LHNDDFN  EYVV VLM+ +P LT   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 131 AEEHCMKLRGNGLLSSIEP 150
           AE +C +L+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

[Close]

BLAST of Sed0009794 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.8e-16
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 71  RKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAHYNGLSLVIICAQAD 130
           RK  P YRV+LHNDDFN  EYVV VLM+ +P LT   AV+IM EAH NG  LVI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 131 AEEHCMKLRGNGL 144
           AE +C +L+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

[Close]

BLAST of Sed0009794 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 58  TPGRESEFDL--RRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEA 117
           +PG  +  D    R RK +P Y+V+LHND  N  EYV+  L +V+P+L+   A+ +M EA
Sbjct: 9   SPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEA 68

Query: 118 HYNGLSLVIICAQADAEEHCMKLRGNGLLSSIEP 150
           H  G+ LVI+C    AE +C  L+  GL SSIEP
Sbjct: 69  HNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

[Close]

BLAST of Sed0009794 vs. ExPASy TrEMBL
Match: A0A5A7STJ9 (ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00780 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.5e-70
Identity = 138/159 (86.79%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQKF----SVVKSATTAGIGGGLLERPVIEK 60
           MEIAI GKL  SPNHVFN KPGDRSS+CKG  F    SVVKSA TAG GGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAH 120
           ATPGRESEFD+RRSRK TPPYRVILHNDDFNKREYVVQVLMKVIP +T+D AVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC 156
           YNGLSLVIICAQADAEEHCM+LRGNGLLSSIEP SGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Sed0009794 vs. ExPASy TrEMBL
Match: A0A1S3BG61 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489260 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.5e-70
Identity = 138/159 (86.79%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQKF----SVVKSATTAGIGGGLLERPVIEK 60
           MEIAI GKL  SPNHVFN KPGDRSS+CKG  F    SVVKSA TAG GGGLLERPVIEK
Sbjct: 1   MEIAICGKLAVSPNHVFNPKPGDRSSMCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAH 120
           ATPGRESEFD+RRSRK TPPYRVILHNDDFNKREYVVQVLMKVIP +T+D AVNIMQEAH
Sbjct: 61  ATPGRESEFDMRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC 156
           YNGLSLVIICAQADAEEHCM+LRGNGLLSSIEP SGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Sed0009794 vs. ExPASy TrEMBL
Match: A0A0A0KWD9 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608440 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 138/159 (86.79%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQKF----SVVKSATTAGIGGGLLERPVIEK 60
           MEIAI GKL  SPNHVFN KPGDRSS+CKG  F    SVVKSA TAG GGGLLERPVIEK
Sbjct: 1   MEIAIRGKLALSPNHVFNPKPGDRSSVCKGLCFNFGASVVKSAATAGRGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAH 120
           ATPGRESEFDLRRSRK TPPYRVILHNDDFNKREYVVQVLMKVIP +T+D AVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKMTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC 156
           YNGLSLVIICAQADAE HCM+LRGNGLLSSIEP SGGCC
Sbjct: 121 YNGLSLVIICAQADAEGHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Sed0009794 vs. ExPASy TrEMBL
Match: A0A6J1DBL1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018609 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.8e-68
Identity = 134/159 (84.28%), Postives = 143/159 (89.94%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQKFS----VVKSATTAGIGGGLLERPVIEK 60
           MEIAI GKL  SPNHVFN +PGD++ +C+G   S    +VKSATTAG GGGLLERPVIEK
Sbjct: 1   MEIAICGKLALSPNHVFNPQPGDKNCVCRGLCSSLGAAIVKSATTAGKGGGLLERPVIEK 60

Query: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEAH 120
           ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIP +T+D AVNIMQEAH
Sbjct: 61  ATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 121 YNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC 156
           YNGLSLVIICAQADAEEHCM+LRGNGLLSSIEP SGGCC
Sbjct: 121 YNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 159

[Close]

BLAST of Sed0009794 vs. ExPASy TrEMBL
Match: A0A6J1HZX0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467734 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 6.7e-68
Identity = 138/160 (86.25%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKG----QKFSVVKSATTAGI-GGGLLERPVIE 60
           MEIAI GKL  SPNHVFN KPGDRSS+CKG       SVVKSATTAG  GGGLLERPVIE
Sbjct: 1   MEIAICGKLALSPNHVFNPKPGDRSSVCKGLCSTLCASVVKSATTAGRGGGGLLERPVIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEA 120
           KATPGRESEFDLRRSRKTTPPYRVILHNDDFN+REYVVQVLMKVIP +T+D AVNIMQEA
Sbjct: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNRREYVVQVLMKVIPGMTLDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGCC 156
           H NGLSLVIICAQADAEEHCM+LRGNGLLSSIEP SGGCC
Sbjct: 121 HCNGLSLVIICAQADAEEHCMQLRGNGLLSSIEPASGGCC 160

[Close]

BLAST of Sed0009794 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 216.5 bits (550), Expect = 1.5e-56
Identity = 106/159 (66.67%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQ--KFSVVKSATTA---GIGGGLLERPVIE 60
           ME AI G+L  +P+ +FNSK GD+  + KG     S++ + +T+   G GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEA 120
           K TPGRESEFDLR+S+K  PPYRVILHND+FNKREYVVQVLMKVIP +TVD AVNIMQEA
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEA 120

Query: 121 HYNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGC 155
           H NGL++VI+CAQADAE+HCM+LRGNGLLSS+EP  GGC
Sbjct: 121 HINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of Sed0009794 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 154.5 bits (389), Expect = 7.2e-38
Identity = 83/159 (52.20%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 1   MEIAIYGKLVPSPNHVFNSKPGDRSSLCKGQ--KFSVVKSATTA---GIGGGLLERPVIE 60
           ME AI G+L  +P+ +FNSK GD+  + KG     S++ + +T+   G GGG+L++P+IE
Sbjct: 1   METAICGRLALAPSSLFNSKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIE 60

Query: 61  KATPGRESEFDLRRSRKTTPPYRVILHNDDFNKREYVVQVLMKVIPKLTVDTAVNIMQEA 120
           K TPGRESEFDLR+S+K  PPYRVILHND+FNKREYVVQVLMK                 
Sbjct: 61  KTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK----------------- 120

Query: 121 HYNGLSLVIICAQADAEEHCMKLRGNGLLSSIEPTSGGC 155
                        ADAE+HCM+LRGNGLLSS+EP  GGC
Sbjct: 121 -------------ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of Sed0009794 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446565.1	5.1e-70	86.79	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_011655763.1	3.3e-69	86.79	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]
XP_022150471.1	3.7e-68	84.28	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Momordica chara...	[more]
XP_038891525.1	8.2e-68	86.16	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 ...	[more]
XP_022968529.1	1.4e-67	86.25	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of Sed0009794 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	2.2e-55	66.67	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	1.1e-22	50.46	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	1.2e-18	59.49	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	5.8e-16	57.53	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	1.1e-14	44.68	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of Sed0009794 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STJ9	2.5e-70	86.79	ATP-dependent Clp protease adapter protein CLPS1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BG61	2.5e-70	86.79	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A0A0KWD9	1.6e-69	86.79	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608440 PE=3 S...	[more]
A0A6J1DBL1	1.8e-68	84.28	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Momordica cha...	[more]
A0A6J1HZX0	6.7e-68	86.25	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]

BLAST of Sed0009794 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	1.5e-56	66.67	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	7.2e-38	52.20	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 71..149 e-value: 1.5E-20 score: 74.8
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 71..149
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 73..140 e-value: 5.3E-19 score: 67.8
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 10..154
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 10..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009794.1	Sed0009794.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008233	peptidase activity