Sed0009745 (gene) Chayote v1

Overview
NameSed0009745
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRNA-dependent RNA polymerase
LocationLG11: 30326829 .. 30331414 (-)
RNA-Seq ExpressionSed0009745
SyntenySed0009745
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTCAGTCATCCCACTTTTACAGGTACATCTCTCATTTTTTAAATTTTTAATTGATTATTTATATTTGATATCAGTTAATTTATACTTATACTAGCATCTCTCATTCTATTCATTAAGATCAATGATATTAGTATTTGTTGATACTTTCTATAGATACAACCATATTTATATATATATTTTAATTTTACAATAATTAAGTGTGAAATTTTAAATTCGCTACTTCTTGTGGTTAGGCACACATTTATGCTATTAAACTATTGTTGTTGTTGACATCATTACAAATATAGCTCGTCTTTTCATTAGATAGACGTGATATCAATGTTTGATAAATAATCAATGTTTCAATATGTTTGTAACTTGAGAAATAGGTCAAGATAAATTATTTATAACATCTTATTATTATTTTTAATGCAATGGGAGAAATTTTAAACACATAACTTGTTAGTTCGTATTATTATTTTGATGAACATTACATTAAAAGTTGCAGTTGAAAACAAAAATGACAACGACAAACGGAAGAACAATCGAGCTTTACGGATTCCGGCGAGACACCACCGCCGACGAGGTGAAAAACTATCTAGAAAATCACACGGGCGACGGAACAATATCGACGGTGAATATTTCAAAGCCGAAAGACAAAAAAACTCGGTTCACATTCGCGACGGTCCGGTTCACGAGCAAACTGGCGGCGGAGTACGTGGTGAAGAAGGCGGAGGCGGAGGAGCGGCTCTGGTTCAGAGATTCGTATCTGAAAGCTAGAGCGGTGGCAGCGCCGATGAGACGGCGCAACGGCGTGGAGAGAATGGAGAATGTAAAAGGGTATTTTGGGAACTTGGTTTGGGAGGATAAAATGAGAGTGATTTGGAAAGGGGAAAATTGGGGTATGGAATTTGGGACTGAAGATAGGAAATTGAGCTTTCATTTGAGTCATGGGTTTGATGAGTACAAAATGGAGCTTCCATTTGAGAATATTTTGGGTTATCAGTTTTATTGCCCATTGGATCGATCTTCCAAACTTTTCCTCATCAAGGTTTGTTCCTCCTCTTTTTCTTTTTCTAAATAATGCATAGAAAATTAATTATTAAGCACAGAGTCACCATAAATTAAATATGCAATTTGGTTTGTTTCATAAAAAAAATATACAATTTGGTTTTTAATTTCTTTCAACCACCAGATTATTTACGATACTTTTTATATAACTATGAATTGATTAGAAATTAAATGAATTTATGAAGTAGAAATATTAAGATTATGTTTCGGTTAATAACTAAGGTCTCGTTTGATTGTTTTTTTGTTTGTAGTTTTTTATATTTAGTTTTAAAAATAAAAATTTGTTAACGATAAGAATCGAATTCTAATTTGTTGCAAAAAAATATTCTTAAACCACTCTTAAATTATATTGAATTTGTTTGAATTGTTGTATTGGCAGTTGCAGGGAGCTCCAAAATTTTCAAGAAAACTCCATTATCGTCTTCTTCACCAAACTCCAAGAAATCCACTGGTTTTCCTTGGATCAGAGATGTCGATTTCACTCCATCTTCATCCATCGGACAATCTTCAGCTCTGTGCTTGGAGCTTCAACCCGGAGATCACCTTCCTTCGTTCTTCCAAACACTAGTCGGATTCAAACAAATTTGTGCCCGATTGGAGCTCCAACCAGGTTCTTCTTCCTCTTCCCCTTCAGATCTGGTTCCAATCGTACAACGCCTTGATATTCCTTTCAAAATTTTGTTCAAAATCAATTCCCTAGTTCAACACGGTTATCTTCCTGGACCAGCATTGGATGATGAGTTCTTCCAGTTGGTAGATCCCAACCGATTTCGTTCTGATTACATCGAATATGCCTTAGAAAAACTGTTTAATTTGAAGGAATGTTGTTATGAACCGCATAAATGGCTCAAGGAGAAGTATCTGTCATTGTACAGCTCTAAGCAACTCCCGTGGAAACCTAGTGTTTCCGTGGATGATGGCTTGGTTTATATTCATAGGGTTCAGATTACGCCGTCGAAAGTATATTTTCGTGGTCCGGAGGCGAATCTTTCTAATAGAGTAGTGCGAAGGTTTAGCGATGATATTGATAGTTTTATTCGTGTGTCTTTTGTTGATGAGGAGTTGGATAAGATTCGTTCTAGTGATCTGGCTCCAAGATCTGCTGATAAAAGTGAAAGAACTAGGGTTTATGATAGGATATTTTCTGTTTTGAGAAATGGTATAGTCATTGGTGAGAAGAAGTTTGAGTTTCTTGCCTTTTCGGCCAGTCAACTACGGGATAATTCGTTTTGGATGTTTGCTTCGAGGGAGGGGCTTAGTGCGTCGGATATTAGAGATTGGATGGGTGACTTCAGTAACATACGAAATGTGGCTAAATATGCTGCTCGATTAGGTCAATCTTTTGGCTCATCTCGGAAGACTTTGTGCGTCGAAAAAAGTGAAATTGAAATTATTCCTGATGTAGAAGTTGTAAGGAAGGAAATCAAATATTGTTTCTCTGATGGGATTGGCAAGATATCTGAAGCAGCGGCTGAAAAAGTTGCTGAAGAGTGTGGCTTGTTATGTCATACACCATCTGCCTTTCAGATTCGATATGCTGGATTCAAAGGTGTTGTTGCTATTGACCCAACGTCGACCAAGAAACTGTCCTTAAGAGATAGTATGCTGAAGTATATGTCGCTCGATACCCAGCTTGATGTTTTGTCGTGGAGCAAGTACCATCCTTGTTATCTTAACCGTCAGGTGATCAACCTTCTATCCACTCTAGGAATTCAGGATCATGTTTTTGTGAAAAAACAAGAGGAGGCTATATATCAACTTGATTCTATTCTAAAAGATTCATCAAAAGCATTAGAAGTGTTAGAGTTGATGTCCCCAGGGGAAATGACTAATATTCTAAAGGAAATGCTTTTGCTATACAATCCACATGAAGAGCCTTTTCTAAATATGATGTTACGGACATTTCGAGCGGATAAATTGTTGGACTTGAAGAACAAATCAAGGATATTTGTGCCTAAGGGAAGGACGATGATGGGTTGCTTGGACGAGACCCGAACACTTGAATATGGGCAGGTGTTTGCTCAATGCTCTGTCCCTGGAAAAGCAAGCAAAAGTAGTTTTGTTGTTAAGGGTAAAGTGGTTGTTGCTAAAAATCCCTGCTTACACCCAGGAGATGTGCGTGTGTTTGATGCTGTCGATGTGAAAACTCTACATCACATGGTGGATTGTGTGGTTTTTCCACAGAAAGGAAAAAGGTAAGCAAACTTATTGTGTTTTAATTGTTTATGTATTCAACACATTTCACATGTCCACACTTATTGCAAATTCATGCACTTTACTTATATGGTATATTTGCATAGAGCTTGTTTTCTTAAGAATTATTGTAAGATCACTCGTCGCATTTTGTATGACTTTTTGTTGCCATCAACTGATAGTTCTAATATGTGTTGTTAGGCCTCACCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGATCTATACTTTGTTAGTTGGGATCCGGAGCTTACTTGTATTAGAACAGTGAAACCTATGAGTTACGAGCCTGCACCAACGATACAGTTGAATCACGACGTGACAATCGAGGTATGGTTTCTGGAAGGTGTTTCTTCTATTGCAAGCACACACGTCATCCCTTTTTAATTAAGATAAAACGTTTATAAGATTTAGAAGTGTTCAACAGATTCTATAGCACCGAAATTGAATTACATACGATCATTTCGATACAGGAAGTGCAGGAATATTTGGCCAACTACATGGTGAATGATGGTCTTGGAGGCATTGCAAATGCTCACACAGTCTTTGCAGATAAGAGTCCGCAAAAAGCAATGAGTAGTGAATGTATCGAACTTGCAAAATTATTCTCAATTGCTGTTGACTTCCCAAAGACTGGCGTGCCAGCAAACTTGCCAGGCTCTCTTCGTGTCAAAGAGTATCCAGATTTCATGGAAAAGCCCCACAGACCGAGTTATGTATCGAAGGGAGTTTTCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCAAACATCAACATCATCGAAACCTTCACGAGGGAAGTCGCTAGCAAGTGCTACGATCCCGACATGGAAGTTGATGGTTTTCAAAATTATTTGGGAGAAGCTTTTGATTTCAAAACCAGGTATGACTTCAAGTTGGGGAACCTAATGGGTTATTATGGTATAGAAACAGAACCTGAGTTAGTTGGTGGAAATATTTTGAGAATGGGAAAGTCTTTTGATAAAAGAAATGACATGGAACAAATTAGCATTGCCATGAAGTCATTAAGAAAGGAGGCTAGGGGGTGGTTTAATGAGAAGGGAAGTAAGTGTGCATACGACGACGACAAAGACGATAACGAAGGATTCGCAAAAGCATCGGCTTGGTACTATGTTACGTATCACCCGAATTATTGGGGTCTGTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTTCTGACAAGCTTCTTCAAATCAAAAGGGAGAAAATGTGCATGATAAATTCTTCCCCAGTGTCATCACTGATAAACAAATTTGGCAAGCTGAGTTTAAACTGA

mRNA sequence

TATTCAGTCATCCCACTTTTACAGGTACATCTCTCATTTTTTAAATTTTTAATTGATTATTTATATTTGATATCAGTTAATTTATACTTATACTAGCATCTCTCATTCTATTCATTAAGATCAATGATATTAGTATTTGTTGATACTTTCTATAGATACAACCATATTTATATATATATTTTAATTTTACAATAATTAAGTGTGAAATTTTAAATTCGCTACTTCTTGTGGTTAGGCACACATTTATGCTATTAAACTATTGTTGTTGTTGACATCATTACAAATATAGCTCGTCTTTTCATTAGATAGACGTGATATCAATGTTTGATAAATAATCAATGTTTCAATATGTTTGTAACTTGAGAAATAGGTCAAGATAAATTATTTATAACATCTTATTATTATTTTTAATGCAATGGGAGAAATTTTAAACACATAACTTGTTAGTTCGTATTATTATTTTGATGAACATTACATTAAAAGTTGCAGTTGAAAACAAAAATGACAACGACAAACGGAAGAACAATCGAGCTTTACGGATTCCGGCGAGACACCACCGCCGACGAGGTGAAAAACTATCTAGAAAATCACACGGGCGACGGAACAATATCGACGGTGAATATTTCAAAGCCGAAAGACAAAAAAACTCGGTTCACATTCGCGACGGTCCGGTTCACGAGCAAACTGGCGGCGGAGTACGTGGTGAAGAAGGCGGAGGCGGAGGAGCGGCTCTGGTTCAGAGATTCGTATCTGAAAGCTAGAGCGGTGGCAGCGCCGATGAGACGGCGCAACGGCGTGGAGAGAATGGAGAATGTAAAAGGGTATTTTGGGAACTTGGTTTGGGAGGATAAAATGAGAGTGATTTGGAAAGGGGAAAATTGGGGTATGGAATTTGGGACTGAAGATAGGAAATTGAGCTTTCATTTGAGTCATGGGTTTGATGAGTACAAAATGGAGCTTCCATTTGAGAATATTTTGGGTTATCAGTTTTATTGCCCATTGGATCGATCTTCCAAACTTTTCCTCATCAAGGTTTTTGCAGGGAGCTCCAAAATTTTCAAGAAAACTCCATTATCGTCTTCTTCACCAAACTCCAAGAAATCCACTGGTTTTCCTTGGATCAGAGATGTCGATTTCACTCCATCTTCATCCATCGGACAATCTTCAGCTCTGTGCTTGGAGCTTCAACCCGGAGATCACCTTCCTTCGTTCTTCCAAACACTAGTCGGATTCAAACAAATTTGTGCCCGATTGGAGCTCCAACCAGGTTCTTCTTCCTCTTCCCCTTCAGATCTGGTTCCAATCGTACAACGCCTTGATATTCCTTTCAAAATTTTGTTCAAAATCAATTCCCTAGTTCAACACGGTTATCTTCCTGGACCAGCATTGGATGATGAGTTCTTCCAGTTGGTAGATCCCAACCGATTTCGTTCTGATTACATCGAATATGCCTTAGAAAAACTGTTTAATTTGAAGGAATGTTGTTATGAACCGCATAAATGGCTCAAGGAGAAGTATCTGTCATTGTACAGCTCTAAGCAACTCCCGTGGAAACCTAGTGTTTCCGTGGATGATGGCTTGGTTTATATTCATAGGGTTCAGATTACGCCGTCGAAAGTATATTTTCGTGGTCCGGAGGCGAATCTTTCTAATAGAGTAGTGCGAAGGTTTAGCGATGATATTGATAGTTTTATTCGTGTGTCTTTTGTTGATGAGGAGTTGGATAAGATTCGTTCTAGTGATCTGGCTCCAAGATCTGCTGATAAAAGTGAAAGAACTAGGGTTTATGATAGGATATTTTCTGTTTTGAGAAATGGTATAGTCATTGGTGAGAAGAAGTTTGAGTTTCTTGCCTTTTCGGCCAGTCAACTACGGGATAATTCGTTTTGGATGTTTGCTTCGAGGGAGGGGCTTAGTGCGTCGGATATTAGAGATTGGATGGGTGACTTCAGTAACATACGAAATGTGGCTAAATATGCTGCTCGATTAGGTCAATCTTTTGGCTCATCTCGGAAGACTTTGTGCGTCGAAAAAAGTGAAATTGAAATTATTCCTGATGTAGAAGTTGTAAGGAAGGAAATCAAATATTGTTTCTCTGATGGGATTGGCAAGATATCTGAAGCAGCGGCTGAAAAAGTTGCTGAAGAGTGTGGCTTGTTATGTCATACACCATCTGCCTTTCAGATTCGATATGCTGGATTCAAAGGTGTTGTTGCTATTGACCCAACGTCGACCAAGAAACTGTCCTTAAGAGATAGTATGCTGAAGTATATGTCGCTCGATACCCAGCTTGATGTTTTGTCGTGGAGCAAGTACCATCCTTGTTATCTTAACCGTCAGGTGATCAACCTTCTATCCACTCTAGGAATTCAGGATCATGTTTTTGTGAAAAAACAAGAGGAGGCTATATATCAACTTGATTCTATTCTAAAAGATTCATCAAAAGCATTAGAAGTGTTAGAGTTGATGTCCCCAGGGGAAATGACTAATATTCTAAAGGAAATGCTTTTGCTATACAATCCACATGAAGAGCCTTTTCTAAATATGATGTTACGGACATTTCGAGCGGATAAATTGTTGGACTTGAAGAACAAATCAAGGATATTTGTGCCTAAGGGAAGGACGATGATGGGTTGCTTGGACGAGACCCGAACACTTGAATATGGGCAGGTGTTTGCTCAATGCTCTGTCCCTGGAAAAGCAAGCAAAAGTAGTTTTGTTGTTAAGGGTAAAGTGGTTGTTGCTAAAAATCCCTGCTTACACCCAGGAGATGTGCGTGTGTTTGATGCTGTCGATGTGAAAACTCTACATCACATGGTGGATTGTGTGGTTTTTCCACAGAAAGGAAAAAGGCCTCACCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGATCTATACTTTGTTAGTTGGGATCCGGAGCTTACTTGTATTAGAACAGTGAAACCTATGAGTTACGAGCCTGCACCAACGATACAGTTGAATCACGACGTGACAATCGAGGAAGTGCAGGAATATTTGGCCAACTACATGGTGAATGATGGTCTTGGAGGCATTGCAAATGCTCACACAGTCTTTGCAGATAAGAGTCCGCAAAAAGCAATGAGTAGTGAATGTATCGAACTTGCAAAATTATTCTCAATTGCTGTTGACTTCCCAAAGACTGGCGTGCCAGCAAACTTGCCAGGCTCTCTTCGTGTCAAAGAGTATCCAGATTTCATGGAAAAGCCCCACAGACCGAGTTATGTATCGAAGGGAGTTTTCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCAAACATCAACATCATCGAAACCTTCACGAGGGAAGTCGCTAGCAAGTGCTACGATCCCGACATGGAAGTTGATGGTTTTCAAAATTATTTGGGAGAAGCTTTTGATTTCAAAACCAGGTATGACTTCAAGTTGGGGAACCTAATGGGTTATTATGGTATAGAAACAGAACCTGAGTTAGTTGGTGGAAATATTTTGAGAATGGGAAAGTCTTTTGATAAAAGAAATGACATGGAACAAATTAGCATTGCCATGAAGTCATTAAGAAAGGAGGCTAGGGGGTGGTTTAATGAGAAGGGAAGTAAGTGTGCATACGACGACGACAAAGACGATAACGAAGGATTCGCAAAAGCATCGGCTTGGTACTATGTTACGTATCACCCGAATTATTGGGGTCTGTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTTCTGACAAGCTTCTTCAAATCAAAAGGGAGAAAATGTGCATGATAAATTCTTCCCCAGTGTCATCACTGATAAACAAATTTGGCAAGCTGAGTTTAAACTGA

Coding sequence (CDS)

ATGACAACGACAAACGGAAGAACAATCGAGCTTTACGGATTCCGGCGAGACACCACCGCCGACGAGGTGAAAAACTATCTAGAAAATCACACGGGCGACGGAACAATATCGACGGTGAATATTTCAAAGCCGAAAGACAAAAAAACTCGGTTCACATTCGCGACGGTCCGGTTCACGAGCAAACTGGCGGCGGAGTACGTGGTGAAGAAGGCGGAGGCGGAGGAGCGGCTCTGGTTCAGAGATTCGTATCTGAAAGCTAGAGCGGTGGCAGCGCCGATGAGACGGCGCAACGGCGTGGAGAGAATGGAGAATGTAAAAGGGTATTTTGGGAACTTGGTTTGGGAGGATAAAATGAGAGTGATTTGGAAAGGGGAAAATTGGGGTATGGAATTTGGGACTGAAGATAGGAAATTGAGCTTTCATTTGAGTCATGGGTTTGATGAGTACAAAATGGAGCTTCCATTTGAGAATATTTTGGGTTATCAGTTTTATTGCCCATTGGATCGATCTTCCAAACTTTTCCTCATCAAGGTTTTTGCAGGGAGCTCCAAAATTTTCAAGAAAACTCCATTATCGTCTTCTTCACCAAACTCCAAGAAATCCACTGGTTTTCCTTGGATCAGAGATGTCGATTTCACTCCATCTTCATCCATCGGACAATCTTCAGCTCTGTGCTTGGAGCTTCAACCCGGAGATCACCTTCCTTCGTTCTTCCAAACACTAGTCGGATTCAAACAAATTTGTGCCCGATTGGAGCTCCAACCAGGTTCTTCTTCCTCTTCCCCTTCAGATCTGGTTCCAATCGTACAACGCCTTGATATTCCTTTCAAAATTTTGTTCAAAATCAATTCCCTAGTTCAACACGGTTATCTTCCTGGACCAGCATTGGATGATGAGTTCTTCCAGTTGGTAGATCCCAACCGATTTCGTTCTGATTACATCGAATATGCCTTAGAAAAACTGTTTAATTTGAAGGAATGTTGTTATGAACCGCATAAATGGCTCAAGGAGAAGTATCTGTCATTGTACAGCTCTAAGCAACTCCCGTGGAAACCTAGTGTTTCCGTGGATGATGGCTTGGTTTATATTCATAGGGTTCAGATTACGCCGTCGAAAGTATATTTTCGTGGTCCGGAGGCGAATCTTTCTAATAGAGTAGTGCGAAGGTTTAGCGATGATATTGATAGTTTTATTCGTGTGTCTTTTGTTGATGAGGAGTTGGATAAGATTCGTTCTAGTGATCTGGCTCCAAGATCTGCTGATAAAAGTGAAAGAACTAGGGTTTATGATAGGATATTTTCTGTTTTGAGAAATGGTATAGTCATTGGTGAGAAGAAGTTTGAGTTTCTTGCCTTTTCGGCCAGTCAACTACGGGATAATTCGTTTTGGATGTTTGCTTCGAGGGAGGGGCTTAGTGCGTCGGATATTAGAGATTGGATGGGTGACTTCAGTAACATACGAAATGTGGCTAAATATGCTGCTCGATTAGGTCAATCTTTTGGCTCATCTCGGAAGACTTTGTGCGTCGAAAAAAGTGAAATTGAAATTATTCCTGATGTAGAAGTTGTAAGGAAGGAAATCAAATATTGTTTCTCTGATGGGATTGGCAAGATATCTGAAGCAGCGGCTGAAAAAGTTGCTGAAGAGTGTGGCTTGTTATGTCATACACCATCTGCCTTTCAGATTCGATATGCTGGATTCAAAGGTGTTGTTGCTATTGACCCAACGTCGACCAAGAAACTGTCCTTAAGAGATAGTATGCTGAAGTATATGTCGCTCGATACCCAGCTTGATGTTTTGTCGTGGAGCAAGTACCATCCTTGTTATCTTAACCGTCAGGTGATCAACCTTCTATCCACTCTAGGAATTCAGGATCATGTTTTTGTGAAAAAACAAGAGGAGGCTATATATCAACTTGATTCTATTCTAAAAGATTCATCAAAAGCATTAGAAGTGTTAGAGTTGATGTCCCCAGGGGAAATGACTAATATTCTAAAGGAAATGCTTTTGCTATACAATCCACATGAAGAGCCTTTTCTAAATATGATGTTACGGACATTTCGAGCGGATAAATTGTTGGACTTGAAGAACAAATCAAGGATATTTGTGCCTAAGGGAAGGACGATGATGGGTTGCTTGGACGAGACCCGAACACTTGAATATGGGCAGGTGTTTGCTCAATGCTCTGTCCCTGGAAAAGCAAGCAAAAGTAGTTTTGTTGTTAAGGGTAAAGTGGTTGTTGCTAAAAATCCCTGCTTACACCCAGGAGATGTGCGTGTGTTTGATGCTGTCGATGTGAAAACTCTACATCACATGGTGGATTGTGTGGTTTTTCCACAGAAAGGAAAAAGGCCTCACCCAAATGAATGTTCTGGGAGTGATTTGGATGGTGATCTATACTTTGTTAGTTGGGATCCGGAGCTTACTTGTATTAGAACAGTGAAACCTATGAGTTACGAGCCTGCACCAACGATACAGTTGAATCACGACGTGACAATCGAGGAAGTGCAGGAATATTTGGCCAACTACATGGTGAATGATGGTCTTGGAGGCATTGCAAATGCTCACACAGTCTTTGCAGATAAGAGTCCGCAAAAAGCAATGAGTAGTGAATGTATCGAACTTGCAAAATTATTCTCAATTGCTGTTGACTTCCCAAAGACTGGCGTGCCAGCAAACTTGCCAGGCTCTCTTCGTGTCAAAGAGTATCCAGATTTCATGGAAAAGCCCCACAGACCGAGTTATGTATCGAAGGGAGTTTTCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCAAACATCAACATCATCGAAACCTTCACGAGGGAAGTCGCTAGCAAGTGCTACGATCCCGACATGGAAGTTGATGGTTTTCAAAATTATTTGGGAGAAGCTTTTGATTTCAAAACCAGGTATGACTTCAAGTTGGGGAACCTAATGGGTTATTATGGTATAGAAACAGAACCTGAGTTAGTTGGTGGAAATATTTTGAGAATGGGAAAGTCTTTTGATAAAAGAAATGACATGGAACAAATTAGCATTGCCATGAAGTCATTAAGAAAGGAGGCTAGGGGGTGGTTTAATGAGAAGGGAAGTAAGTGTGCATACGACGACGACAAAGACGATAACGAAGGATTCGCAAAAGCATCGGCTTGGTACTATGTTACGTATCACCCGAATTATTGGGGTCTGTACAATGAAGGTATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTTCTGACAAGCTTCTTCAAATCAAAAGGGAGAAAATGTGCATGATAAATTCTTCCCCAGTGTCATCACTGATAAACAAATTTGGCAAGCTGAGTTTAAACTGA

Protein sequence

MTTTNGRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSKLAAEYVVKKAEAEERLWFRDSYLKARAVAAPMRRRNGVERMENVKGYFGNLVWEDKMRVIWKGENWGMEFGTEDRKLSFHLSHGFDEYKMELPFENILGYQFYCPLDRSSKLFLIKVFAGSSKIFKKTPLSSSSPNSKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDHLPSFFQTLVGFKQICARLELQPGSSSSSPSDLVPIVQRLDIPFKILFKINSLVQHGYLPGPALDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWKPSVSVDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSSDLAPRSADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGLSASDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYCFSDGIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKYMSLDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEVLELMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMGCLDETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNHDVTIEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTGVPANLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKCYDPDMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRNDMEQISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGMQRDHFLSFPWCVSDKLLQIKREKMCMINSSPVSSLINKFGKLSLN
Homology
[Close]
BLAST of Sed0009745 vs. NCBI nr
Match: XP_023524039.1 (probable RNA-dependent RNA polymerase 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1783.8 bits (4619), Expect = 0.0e+00
Identity = 879/1115 (78.83%), Postives = 988/1115 (88.61%), Query Frame = 0 

Query: 4    TNGRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSKLA 63
            T G+TIE++GF R+ +A EVK ++ENHTG+GT+S V IS+PKD+K R T+A V F SK+A
Sbjct: 3    TKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISEPKDEKARLTYARVEFRSKVA 62

Query: 64   AEYVVKKAEAEERLWFRDSYLKARAVAAPMRRRNGVERMENVKGYFGNLVWEDKMRVIWK 123
            AEYVV+KAEAEERLWF   YLKAR V     R   VERME V+   G++VW+++MRVIW+
Sbjct: 63   AEYVVEKAEAEERLWFGRWYLKARGVERGREREMRVERMEKVRVQLGSVVWKEEMRVIWR 122

Query: 124  GENWGMEFGTEDRKLSFHLSHGFDEYKMELPFENILGYQFYCPLDRSSKLFLIKVFAGSS 183
            GENW +E+G   RKL F+LS+G  +YKMEL FENILG Q  CP + SS LFLI++  G+ 
Sbjct: 123  GENWSVEYGNGMRKLWFYLSYGVIDYKMELRFENILGVQLRCPHNSSSNLFLIQL-QGAP 182

Query: 184  KIFKKTPLSSSSP-NSKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDHLPSFFQTLV 243
            +IFKK P SSSS   SK+STGF WIRDVDFTPSS IGQS ALC E+ PGD LPSFFQTLV
Sbjct: 183  RIFKKCPSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPSFFQTLV 242

Query: 244  GFKQICARLELQPGSSSSSPSDLVPIV---QRLDIPFKILFKINSLVQHGYLPGPALDDE 303
            G+K+I    +L  GS+ SS S+LVPIV   Q  DIP+KILFKIN+LVQHGYLPG ALDD+
Sbjct: 243  GYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDDK 302

Query: 304  FFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWKPSVSVDDG 363
            FF+LVDP+RFRSDYIEYALEKLF+LKECCYEP KWLK++YLS  SS QLPWK ++S+DD 
Sbjct: 303  FFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDS 362

Query: 364  LVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSSDLAPR- 423
            LVY+HRVQITP++VYFRGPEANLSNRVVRRF DDID+F+RVSFVDEELDKI SSDL+PR 
Sbjct: 363  LVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPRT 422

Query: 424  SADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGLSASDIRD 483
            S +K ERT VYDRI SVLRNGIVIG KKFEFLAFSASQLR+NSFWMFA REGL+A+DIR+
Sbjct: 423  STEKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGLNAADIRE 482

Query: 484  WMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYCFSDGIGKI 543
            WMGDF  IRNVAKYAARLGQSFGSSRKTLCVE++EIE+IPDVEV RK IKYCFSDGIGKI
Sbjct: 483  WMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFSDGIGKI 542

Query: 544  SEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKYMSLDTQLD 603
            SEA AE VAE+CGL+ HTPSAFQIRYAG+KGVVA+DPTS KKLSLR SMLKYMSLDTQLD
Sbjct: 543  SEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQLD 602

Query: 604  VLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEVLELMSP 663
            VLSWSKY PC+LNRQVINLLSTLGI+D VFV +Q++A+ QLDSIL+D SKALEVLELMSP
Sbjct: 603  VLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALEVLELMSP 662

Query: 664  GEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMGCLDETRT 723
            GEMT+ILK+MLL YNPHEEPFLNMMLRTFRADKLLDL+ KSRIFVPKGRTMMGCLDETR+
Sbjct: 663  GEMTSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRS 722

Query: 724  LEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLHHMVDCVVF 783
            LEYGQVF  CSVPG++S+S+FVVKGKVVVAKNPCLHPGDVRV DAVDVKTLHHMVDCVVF
Sbjct: 723  LEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVF 782

Query: 784  PQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNHDVTIEEVQE 843
            PQKGKRPHPNECSGSDLDGDLYFV WDPELTCIR +KPMSYEPAPTIQL+HDVTIEEVQE
Sbjct: 783  PQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIEEVQE 842

Query: 844  YLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTGVPANLPGSL 903
            Y ANYMVNDGLGGIANAHTVFADK P+KAMS+ECIELAKLFSIAVDFPKTGVPANLP SL
Sbjct: 843  YFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSL 902

Query: 904  RVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKCYDPDMEVDG 963
            RV +YPDFMEKP++ SY+S GV GKLFRGVKDVSS+IN IETFTREVA+KCYDPDMEV G
Sbjct: 903  RVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEVMG 962

Query: 964  FQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRNDMEQISIAMK 1023
            F+NYL EAFD+K+ YDFKLGNLM YYGIETEPELV GNILRMGKSFDKRNDMEQIS+AM+
Sbjct: 963  FENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMR 1022

Query: 1024 SLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGMQRDHFLSF 1083
            SLRKEARGWFNEKGSK  Y+++KD+++ +AKASAWY+VTYHPN+WG YNEGMQRDHFLSF
Sbjct: 1023 SLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSF 1082

Query: 1084 PWCVSDKLLQIKREKMCMINSSPVSSLINKFGKLS 1114
            PWCVS+KL+QIKREKM    SSPVSSLI+KFGKLS
Sbjct: 1083 PWCVSEKLIQIKREKM---ESSPVSSLIHKFGKLS 1113

[Close]
BLAST of Sed0009745 vs. NCBI nr
Match: XP_023524048.1 (probable RNA-dependent RNA polymerase 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1782.3 bits (4615), Expect = 0.0e+00
Identity = 879/1122 (78.34%), Postives = 989/1122 (88.15%), Query Frame = 0 

Query: 4    TNGRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSKLA 63
            T G+TIE++GF R+ +A EVK ++ENHTG+GT+S V IS+PKD+K R T+A V F SK+A
Sbjct: 3    TKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISEPKDEKARLTYARVEFRSKVA 62

Query: 64   AEYVVKKAEAEERLWFRDSYLKARAVAAPMRRRNGVERMENVKGYFGNLVWEDKMRVIWK 123
            AEYVV+KAEAEERLWF   YLKAR V     R   VERME V+   G++VW+++MRVIW+
Sbjct: 63   AEYVVEKAEAEERLWFGRWYLKARGVERGREREMRVERMEKVRVQLGSVVWKEEMRVIWR 122

Query: 124  GENWGMEFGTEDRKLSFHLSHGFDEYKMELPFENILGYQFYCPLDRSSKLFLIKVFAGSS 183
            GENW +E+G   RKL F+LS+G  +YKMEL FENILG Q  CP + SS LFLI++  G+ 
Sbjct: 123  GENWSVEYGNGMRKLWFYLSYGVIDYKMELRFENILGVQLRCPHNSSSNLFLIQL-QGAP 182

Query: 184  KIFKKTPLSSSSPN--------SKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDHLP 243
            +IFKK P SSSS +        SK+STGF WIRDVDFTPSS IGQS ALC E+ PGD LP
Sbjct: 183  RIFKKCPSSSSSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLP 242

Query: 244  SFFQTLVGFKQICARLELQPGSSSSSPSDLVPIV---QRLDIPFKILFKINSLVQHGYLP 303
            SFFQTLVG+K+I    +L  GS+ SS S+LVPIV   Q  DIP+KILFKIN+LVQHGYLP
Sbjct: 243  SFFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHGYLP 302

Query: 304  GPALDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWKP 363
            G ALDD+FF+LVDP+RFRSDYIEYALEKLF+LKECCYEP KWLK++YLS  SS QLPWK 
Sbjct: 303  GSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKA 362

Query: 364  SVSVDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRS 423
            ++S+DD LVY+HRVQITP++VYFRGPEANLSNRVVRRF DDID+F+RVSFVDEELDKI S
Sbjct: 363  NISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHS 422

Query: 424  SDLAPR-SADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGL 483
            SDL+PR S +K ERT VYDRI SVLRNGIVIG KKFEFLAFSASQLR+NSFWMFA REGL
Sbjct: 423  SDLSPRTSTEKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPREGL 482

Query: 484  SASDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYCF 543
            +A+DIR+WMGDF  IRNVAKYAARLGQSFGSSRKTLCVE++EIE+IPDVEV RK IKYCF
Sbjct: 483  NAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCF 542

Query: 544  SDGIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKYM 603
            SDGIGKISEA AE VAE+CGL+ HTPSAFQIRYAG+KGVVA+DPTS KKLSLR SMLKYM
Sbjct: 543  SDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYM 602

Query: 604  SLDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALE 663
            SLDTQLDVLSWSKY PC+LNRQVINLLSTLGI+D VFV +Q++A+ QLDSIL+D SKALE
Sbjct: 603  SLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSKALE 662

Query: 664  VLELMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMG 723
            VLELMSPGEMT+ILK+MLL YNPHEEPFLNMMLRTFRADKLLDL+ KSRIFVPKGRTMMG
Sbjct: 663  VLELMSPGEMTSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMG 722

Query: 724  CLDETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLHH 783
            CLDETR+LEYGQVF  CSVPG++S+S+FVVKGKVVVAKNPCLHPGDVRV DAVDVKTLHH
Sbjct: 723  CLDETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHH 782

Query: 784  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNHDV 843
            MVDCVVFPQKGKRPHPNECSGSDLDGDLYFV WDPELTCIR +KPMSYEPAPTIQL+HDV
Sbjct: 783  MVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDV 842

Query: 844  TIEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTGVP 903
            TIEEVQEY ANYMVNDGLGGIANAHTVFADK P+KAMS+ECIELAKLFSIAVDFPKTGVP
Sbjct: 843  TIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVP 902

Query: 904  ANLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKCYD 963
            ANLP SLRV +YPDFMEKP++ SY+S GV GKLFRGVKDVSS+IN IETFTREVA+KCYD
Sbjct: 903  ANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYD 962

Query: 964  PDMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRNDME 1023
            PDMEV GF+NYL EAFD+K+ YDFKLGNLM YYGIETEPELV GNILRMGKSFDKRNDME
Sbjct: 963  PDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDME 1022

Query: 1024 QISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGMQ 1083
            QIS+AM+SLRKEARGWFNEKGSK  Y+++KD+++ +AKASAWY+VTYHPN+WG YNEGMQ
Sbjct: 1023 QISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQ 1082

Query: 1084 RDHFLSFPWCVSDKLLQIKREKMCMINSSPVSSLINKFGKLS 1114
            RDHFLSFPWCVS+KL+QIKREKM    SSPVSSLI+KFGKLS
Sbjct: 1083 RDHFLSFPWCVSEKLIQIKREKM---ESSPVSSLIHKFGKLS 1120

[Close]
BLAST of Sed0009745 vs. NCBI nr
Match: KAG7032582.1 (RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1778.1 bits (4604), Expect = 0.0e+00
Identity = 881/1125 (78.31%), Postives = 991/1125 (88.09%), Query Frame = 0 

Query: 4    TNGRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSKLA 63
            T G+TIE++GF R+ +A EVK ++ENHTG+GT+S V ISKPKDKK+R TFA V F SK+A
Sbjct: 3    TKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKDKKSRLTFARVEFRSKVA 62

Query: 64   AEYVVKKAEAEERLWFRDSYLKARAVAAPMRRR-----NGVERMENVKGYFGNLVWEDKM 123
            AEYVV+KAEAEERLWF   YLKAR V     R        +ER+E V+   G+++ +D+M
Sbjct: 63   AEYVVEKAEAEERLWFGRWYLKARGVEREREREREMRVERLERLEKVRVQLGSVISKDEM 122

Query: 124  RVIWKGENWGMEFGTEDRKLSFHLSHGF--DEYKMELPFENILGYQFYCPLDRSSKLFLI 183
            RVIW+GE+W +E+G   RKL F+LS+G   D+YKMEL FENILG Q  CP + SS LFLI
Sbjct: 123  RVIWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLI 182

Query: 184  KVFAGSSKIFKKTPLSSSSPN----SKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGD 243
            ++  G+ +IFKK P SSSS +    SK+STGF WIRDVDFTPSS IGQS ALC E+ PGD
Sbjct: 183  QL-QGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGD 242

Query: 244  HLPSFFQTLVGFKQICARLELQPGSSSSSPSDLVPIV---QRLDIPFKILFKINSLVQHG 303
             LPSFFQTLVG+K+I    +L  GS+ SS S+LVPIV   Q   IP+KILFKIN+LVQHG
Sbjct: 243  QLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHG 302

Query: 304  YLPGPALDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLP 363
            YLPG ALDD+FF+LVDP RFRSDYIEYALEKLF+LKECCYEP KWLK++YLS  SS QLP
Sbjct: 303  YLPGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLP 362

Query: 364  WKPSVSVDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDK 423
            WK ++S+DD LVY+HRVQITP+KVYFRGPEANLSNRVVRRF DDID+F+RVSFVDEELDK
Sbjct: 363  WKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDK 422

Query: 424  IRSSDLAPR-SADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASR 483
            I SSDL+PR S +K ERTRVYDRI SVLRNGI+IG KKFEFLAFSASQLR+NSFWMFASR
Sbjct: 423  IHSSDLSPRTSTEKIERTRVYDRILSVLRNGILIGGKKFEFLAFSASQLRENSFWMFASR 482

Query: 484  EGLSASDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIK 543
            EGL+A+DIR+WMGDF  IRNVAKYAARLGQSFGSSRKTLCVE++EIE+IPDVEV RK IK
Sbjct: 483  EGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIK 542

Query: 544  YCFSDGIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSML 603
            YCFSDGIGKISEA AE VAE+CGL+ HTPSAFQIRYAG+KGVVA+DPTS KKLSLR SML
Sbjct: 543  YCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSML 602

Query: 604  KYMSLDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSK 663
            KYMSLDTQLDVLSWSKY PC+LNRQVINLLSTLGIQD VFVK+Q++A+ QLDSIL+D SK
Sbjct: 603  KYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSK 662

Query: 664  ALEVLELMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRT 723
            ALEVLELMSPGEMT++LK+MLL YNPHEEPFLNMMLRTFRADKLLDL+ KSRIFVP+GRT
Sbjct: 663  ALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRT 722

Query: 724  MMGCLDETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKT 783
            MMGCLDETRTLEYGQVF  CSVPG++S+S+FVVKGKVVVAKNPCLHPGDVRV DAVDVKT
Sbjct: 723  MMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKT 782

Query: 784  LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLN 843
            LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFV WDPELTCIR +KPMSYEPAPTIQL+
Sbjct: 783  LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLD 842

Query: 844  HDVTIEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKT 903
            HDVTIEEVQEY ANYMVNDGLGGIANAHTVFADK P+KAMS+ECIELAKLFSIAVDFPKT
Sbjct: 843  HDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKT 902

Query: 904  GVPANLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASK 963
            GVPANLP SLRV EYPDFMEKP++ +Y+S GV GKLFRGVKDVSS+IN IETFTREVA+K
Sbjct: 903  GVPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAAK 962

Query: 964  CYDPDMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRN 1023
            CYDPDMEV GF+NYL EAFD+K+ YDFKLGNLM YYGIETEPELV GNILRMGKSFDKRN
Sbjct: 963  CYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRN 1022

Query: 1024 DMEQISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNE 1083
            DMEQIS+AM+SLRKEARGWFNEKGSK  Y+++KD+++ +AKASAWY+VTYHPN+WG YNE
Sbjct: 1023 DMEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNE 1082

Query: 1084 GMQRDHFLSFPWCVSDKLLQIKREKMCMINSSPVSSLINKFGKLS 1114
            GMQRDHFLSFPWCVS+KL+QIKREKM    SSPVSSLI+KFGKLS
Sbjct: 1083 GMQRDHFLSFPWCVSEKLIQIKREKM---ESSPVSSLIHKFGKLS 1123

[Close]
BLAST of Sed0009745 vs. NCBI nr
Match: XP_022923210.1 (probable RNA-dependent RNA polymerase 1 [Cucurbita moschata])

HSP 1 Score: 1775.4 bits (4597), Expect = 0.0e+00
Identity = 881/1123 (78.45%), Postives = 989/1123 (88.07%), Query Frame = 0 

Query: 4    TNGRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSKLA 63
            T G+TIE++GF R+ +A EVK ++ENHTG+GT+S V ISKPK +K+R T A V F SK+A
Sbjct: 3    TKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVA 62

Query: 64   AEYVVKKAEAEERLWFRDSYLKARAVAAPMRRRNGV---ERMENVKGYFGNLVWEDKMRV 123
            AEYVV+KAEAEERLWF   YLKAR V     R   V   ER+E V+   G+++W+D+MRV
Sbjct: 63   AEYVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRV 122

Query: 124  IWKGENWGMEFGTEDRKLSFHLSHGF--DEYKMELPFENILGYQFYCPLDRSSKLFLIKV 183
            IW+GE+W +E+G   RKL F+LS+G   D+YKMEL FENILG Q  CP + SS LFLI++
Sbjct: 123  IWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQL 182

Query: 184  FAGSSKIFKKTPLSSSSPN----SKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDHL 243
              G+ +IFKK P SSSS +    SK+STGF WIRDVDFTPSS IGQS ALC E+ PGD L
Sbjct: 183  -QGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQL 242

Query: 244  PSFFQTLVGFKQICARLELQPGSSSSSPSDLVPIV---QRLDIPFKILFKINSLVQHGYL 303
            PSFFQTLVG+K+I    +L  GS+ SS S+LVPIV   Q   IP+KILFKIN+LVQHGYL
Sbjct: 243  PSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYL 302

Query: 304  PGPALDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWK 363
            PG ALDD+FF+LVDP RFRSDYIEYALEKLF+LKECCYEP KWLK++YLS  SS QLPWK
Sbjct: 303  PGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWK 362

Query: 364  PSVSVDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIR 423
             ++S+DD LVY+HRVQITP+KVYFRGPEANLSNRVVRRF DDID+F+RVSFVDEELDKI 
Sbjct: 363  ANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIY 422

Query: 424  SSDLAPR-SADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREG 483
            SSDL+PR S +K ERTRVYDRI SVLRNGIVIG KKFEFLAFSASQLR+NSFWMFASREG
Sbjct: 423  SSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREG 482

Query: 484  LSASDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYC 543
            L+A+DIR+WMGDF  IRNVAKYAARLGQSFGSSRKTLCVE++EIE+IPDVEV RK IKYC
Sbjct: 483  LNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYC 542

Query: 544  FSDGIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKY 603
            FSDGIGKISEA AE VAE+CGL+ HTPSAFQIRYAG+KGVVA+DPTS KKLSLR SMLKY
Sbjct: 543  FSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKY 602

Query: 604  MSLDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKAL 663
            MSLDTQLDVLSWSKY PC+LNRQVINLLSTLGIQD VFVK+Q++A+ QLDSIL+D SKAL
Sbjct: 603  MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKAL 662

Query: 664  EVLELMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMM 723
            EVLELMSPGEMT++LK+MLL YNPHEEPFLNMMLRTFRADKLLDL+ KSRIFVP+GRTMM
Sbjct: 663  EVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTMM 722

Query: 724  GCLDETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLH 783
            GCLDETRTLEYGQVF  CSVPG++S+S+FVVKGKVVVAKNPCLHPGDVRV DAVDVKTLH
Sbjct: 723  GCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLH 782

Query: 784  HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNHD 843
            HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFV WDPELTCIR +KPMSYEPAPTIQL+HD
Sbjct: 783  HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHD 842

Query: 844  VTIEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTGV 903
            VTIEEVQEY ANYMVNDGLGGIANAHTVFADK P+KAMS+ECIELAKLFSIAVDFPKTGV
Sbjct: 843  VTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGV 902

Query: 904  PANLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKCY 963
            PANLP SLRV EYPDFMEKP++ +Y S GV GKLFRGVKDVSS+IN IETFTREVA+KCY
Sbjct: 903  PANLPRSLRVHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCY 962

Query: 964  DPDMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRNDM 1023
            DPDMEV GF+NYL EAFD+K+ YDFKLGNLM YYGIETEPELV GNILRMGKSFDKRNDM
Sbjct: 963  DPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDM 1022

Query: 1024 EQISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGM 1083
            EQIS+AM+SLRKEARGWFNEKGSK  Y+++KD+++ +AKASAWY+VTYHPN+WG YNEGM
Sbjct: 1023 EQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGM 1082

Query: 1084 QRDHFLSFPWCVSDKLLQIKREKMCMINSSPVSSLINKFGKLS 1114
            QRDHFLSFPWCVS+KL+QIKREKM    SSPVSSLI+KFGKLS
Sbjct: 1083 QRDHFLSFPWCVSEKLIQIKREKM---ESSPVSSLIHKFGKLS 1121

[Close]
BLAST of Sed0009745 vs. NCBI nr
Match: XP_022990904.1 (probable RNA-dependent RNA polymerase 1 [Cucurbita maxima])

HSP 1 Score: 1775.0 bits (4596), Expect = 0.0e+00
Identity = 881/1119 (78.73%), Postives = 986/1119 (88.11%), Query Frame = 0 

Query: 4    TNGRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSKLA 63
            TNG+TIE++GFRR+ +A EVK ++ENHTG+GT+S V ISKPKD K R TFA V F SK+A
Sbjct: 3    TNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVA 62

Query: 64   AEYVVKKAEAEERLWFRDSYLKARAVAAPMRRRNGVERMENVKGYFGNLVWEDKMRVIWK 123
            AEYVV+KAEAEE LWF   YLKAR V   MR    VERME V+   G+++ +++MRVIW+
Sbjct: 63   AEYVVEKAEAEEGLWFGRWYLKARGVEREMR----VERMEKVRVQLGSVISKEEMRVIWR 122

Query: 124  GENWGMEFGTEDRKLSFHLSHGF--DEYKMELPFENILGYQFYCPLDRSSKLFLIKVFAG 183
            GE W +E+G   RKL F+LS+G   D+YKMEL FENILG Q  CP + SS LFLI++  G
Sbjct: 123  GEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQL-QG 182

Query: 184  SSKIFKKTPLSSSSPN---SKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDHLPSFF 243
            + +IFKK P SSSS +   SK+STGF WIRDVDFTPSS IGQS +LCLE+ PGD LPSFF
Sbjct: 183  APRIFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSFF 242

Query: 244  QTLVGFKQICARLELQPGSSSSSPSDLVPIV---QRLDIPFKILFKINSLVQHGYLPGPA 303
            QTLVG+K+I    +L  GS+ SS S+LVPIV   Q  DIP+KILFKIN+LVQHGYLPG A
Sbjct: 243  QTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSA 302

Query: 304  LDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWKPSVS 363
            LDD+FF+LVDP+RFRSDYIEYALEKLF+LKECCYEP KWLK++YLS  SS QLPWK ++S
Sbjct: 303  LDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANIS 362

Query: 364  VDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSSDL 423
            +DD LVY+HRVQITP+KVYFRGPEANLSNRVVRRF DDID+F+RVSFVDEELDKI SSDL
Sbjct: 363  LDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDL 422

Query: 424  APR-SADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGLSAS 483
            +PR S +K ERTRVYDRI SVLRNGIVIG KKFEFLAFSASQLR+NSFWMFASREGL+A+
Sbjct: 423  SPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAA 482

Query: 484  DIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYCFSDG 543
            DIR+WMGDF  IRNVAKYAARLGQSFGSSRKTLCVE++EIE+IPD EV RK IKYCFSDG
Sbjct: 483  DIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDG 542

Query: 544  IGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKYMSLD 603
            IGKISEA AE VAE+CGL+ HTPSAFQIRYAG+KGVVA+DPTS KKLSLR SMLKYMSLD
Sbjct: 543  IGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLD 602

Query: 604  TQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEVLE 663
            TQLDVLSWSKY PC+LNRQVINLLSTLGI+D VFVK+Q++A+ QLDSIL+D SKALEVLE
Sbjct: 603  TQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLE 662

Query: 664  LMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMGCLD 723
            LMSPGEMT++LK+MLL YNPHEEPFLNMMLRTFRADKLLDL+ KSRIFVPKGRTMMGCLD
Sbjct: 663  LMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLD 722

Query: 724  ETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLHHMVD 783
            ETRTLEYGQVF  CSVPG++S+S+FVVKGKVVVAKNPCLHPGDVRV DAVDVKTLHHMVD
Sbjct: 723  ETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVD 782

Query: 784  CVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNHDVTIE 843
            CVVFPQKGKRPHPNECSGSDLDGDLYFV WDPELTCIR +KPMSYEPAPTIQL+HDVT+E
Sbjct: 783  CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLE 842

Query: 844  EVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTGVPANL 903
            EVQEY ANYMVNDGLGGIANAHTVFAD  P+KAMS+ECIELAKLFSIAVDFPKTGVPANL
Sbjct: 843  EVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANL 902

Query: 904  PGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKCYDPDM 963
            P SLRV EYPDFMEKP++ +Y+S GV GKLFRGVKDVSS+IN IETFTREVA KCYDPDM
Sbjct: 903  PRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDM 962

Query: 964  EVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRNDMEQIS 1023
            EV GF+NYL EAFD+K  YDFKLGNLM YYGIETEPELV GNILRMGKSFDKRNDMEQIS
Sbjct: 963  EVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQIS 1022

Query: 1024 IAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGMQRDH 1083
            +AM+SLRKEARGWFNEK SK  Y+++K ++  +AKASAWY+VTYHPN+WG YNEGMQRDH
Sbjct: 1023 LAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDH 1082

Query: 1084 FLSFPWCVSDKLLQIKREKMCMINSSPVSSLINKFGKLS 1114
            FLSFPWCVSDKL+QIKREKM    SSPVSSLI+KFGKLS
Sbjct: 1083 FLSFPWCVSDKLIQIKREKM---ESSPVSSLIHKFGKLS 1113

[Close]
BLAST of Sed0009745 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1165.6 bits (3014), Expect = 0.0e+00
Identity = 610/1102 (55.35%), Postives = 782/1102 (70.96%), Query Frame = 0 

Query: 6    GRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSKLAAE 65
            G+TI+++GF    +A+EVK +LE  TG GT+  + + +PK    R  +A V+FTS+    
Sbjct: 2    GKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPR-VYAIVQFTSERHTR 61

Query: 66   YVVKKAEAEERLWFRDSYLKARAVAAPM--RRRNGVERMENVKGYFGNLVWEDKMRVIWK 125
             ++    A ERL++  SYLKA  V   +  + R  +  +  +K +FG  V   K   +W 
Sbjct: 62   LII--TAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 121

Query: 126  GENWGMEFGTEDRKLSFHLSHGFDEYKMELPFENILGYQFYCPLDRSSKLFLIKVFAGSS 185
             ++  + FG   RKL F  S    +Y++EL +ENI     + P  RSSK  +I+V  G+ 
Sbjct: 122  AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVI-GAP 181

Query: 186  KIFKKTP-----LSSSSPNSKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDHLPSFF 245
            KIF+K       L          +   WIR  DFT SS IGQS+A CLEL    ++P F 
Sbjct: 182  KIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFR 241

Query: 246  QTLVGF-KQICARLELQPGSS-SSSPSDLVPIVQ---RLDIPFKILFKINSLVQHGYLPG 305
            +    + +   +   ++ GSS SS+ + LVP+V       +PF+ILFK+N+LVQ+  L G
Sbjct: 242  ENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSG 301

Query: 306  PALDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWKPS 365
            PALD +F++L++  ++    I++ LEKLF+L ECCYEP  WL+++Y    S  +LP  P+
Sbjct: 302  PALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPT 361

Query: 366  VSVDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSS 425
            +S+DDGLVY++RVQ+TP++VYF GPE N+SNRV+R +S  I++F+RVSFVDE+L+K+RS 
Sbjct: 362  ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 421

Query: 426  DLAPRSADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGLSA 485
            DL+PRS+ +  RT++YDRI+SVLR+GIVIG+KKFEFLAFS+SQLR+NS WMFA  + ++A
Sbjct: 422  DLSPRSSTQ-RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITA 481

Query: 486  SDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYCFSD 545
            + IR WMGDF +IRNVAKYAARLGQSF SSR+TL V   EIE+IPDVE++    +Y FSD
Sbjct: 482  AHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSD 541

Query: 546  GIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKYMSL 605
            GIGKIS   A KVA +CGL   +PSAFQIRY G+KGVVA+DP S+KKLSLR SM K+ S 
Sbjct: 542  GIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESE 601

Query: 606  DTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEVL 665
            +T+LDVL+WSKY PCY+NRQ+I LLSTLG+ D VF KKQ E + +LD+IL    +A E L
Sbjct: 602  NTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEAL 661

Query: 666  ELMSPGEMTNILKEMLLL-YNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMGC 725
             LM+PGE TNILK ++L  Y P  EPFL+MML+ FRA KLL+L+ K+RIF+  GR+MMGC
Sbjct: 662  GLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGC 721

Query: 726  LDETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLHHM 785
            LDETRTLEYGQV  Q S P +  +  F++ G VVVAKNPCLHPGDVRV  AV+V  L+HM
Sbjct: 722  LDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHM 781

Query: 786  VDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNHDVT 845
            VDCVVFPQKG RPHPNECSGSDLDGD+YFV WD EL   RT +PM Y P PT  L+HDVT
Sbjct: 782  VDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVT 841

Query: 846  IEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTGVPA 905
            IEEV+EY ANY+VND LG IANAHT FADK P KA S  CIELAK FS AVDFPKTGV A
Sbjct: 842  IEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAA 901

Query: 906  NLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKCYDP 965
             +P  L VKEYPDFMEKP +P+Y SK V GKLFR VK+ +  +  I++FT +VASK YD 
Sbjct: 902  VIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDK 961

Query: 966  DMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRNDMEQ 1025
            DMEVDGF+ Y+ EAF  K  YDFKLGNLM YYGI+TE E++ G I+RM KSF KR D E 
Sbjct: 962  DMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAES 1021

Query: 1026 ISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGMQR 1085
            I  A+++LRKE    FN          ++++NE  AKASAWY+VTYH +YWGLYNEG+ R
Sbjct: 1022 IGRAVRALRKETLSLFNA--------SEEEENES-AKASAWYHVTYHSSYWGLYNEGLNR 1081

Query: 1086 DHFLSFPWCVSDKLLQIKREKM 1095
            DHFLSF WCV DKL++IK+  +
Sbjct: 1082 DHFLSFAWCVYDKLVRIKKTNL 1088

[Close]
BLAST of Sed0009745 vs. ExPASy Swiss-Prot
Match: Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 896.7 bits (2316), Expect = 2.6e-259
Identity = 451/734 (61.44%), Postives = 558/734 (76.02%), Query Frame = 0 

Query: 371  SKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSSDLAPRSAD--KSERTRV 430
            S VYF GPE N+SNRVVR FS DI++F+R+SFVDE+ +K+R++DL+PRSA    + RT +
Sbjct: 7    STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 66

Query: 431  YDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGLSASDIRDWMGDFSNIRN 490
            Y R+ SVL +GI IG K FEFLAFS+SQLRDNS WMFASR+GL+ASDIR WMGDF NIRN
Sbjct: 67   YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126

Query: 491  VAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYCFSDGIGKISEAAAEKVAE 550
            VAKYAARLGQSF SS +TL V+K E+E I D   ++   ++ FSDGIGKIS A A +VA 
Sbjct: 127  VAKYAARLGQSFSSSTETLKVQKYEVEEISD---IKNGTQHVFSDGIGKISSAFANEVAM 186

Query: 551  ECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKYMSLDTQLDVLSWSKYHPC 610
            +C L    PSAFQIRY G+KGVVA+DPTS  KLSLR SMLK+ S +  +DVL++SKY P 
Sbjct: 187  KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 246

Query: 611  YLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEVLELMSPGEMTNILKEM 670
            +LNRQ+I LLSTLG++D VF +KQEEA+ QL+ ++ D   A+E +ELM  GE+TN +KE+
Sbjct: 247  FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 306

Query: 671  LLL-YNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMGCLDETRTLEYGQVFAQ 730
            LL  Y P +EP+L+M+L+TFRA KLL+LK KSRI +PKGR MMGCLDETRTL+YGQVF +
Sbjct: 307  LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 366

Query: 731  CSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLHHMVDCVVFPQKGKRPHP 790
             +  G      F V GKVV+AKNPCLHPGD+R+  AVDV  LHHM +CVVFPQ+G RPHP
Sbjct: 367  -ATSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHP 426

Query: 791  NECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNHDVTIEEVQEYLANYMVND 850
            NECSGSDLDGD+YFVSWDP L   R V PM Y PAPT  L+HDVTIEEV+EY  NY+VN+
Sbjct: 427  NECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNE 486

Query: 851  GLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTGVPANLPGSLRVKEYPDFM 910
             LG IANAH VFADK   KA SS CIELAKLFSIAVDFPKTGVPA +P  L VKEYPDFM
Sbjct: 487  SLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFM 546

Query: 911  EKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKCYDPDMEVDGFQNYLGEAF 970
            EK  + +Y SKGV GKL+R +K  + +   I+ FTREVA + YD DM VDG+++Y+ EA 
Sbjct: 547  EKLDKVTYESKGVIGKLYREIKKHTPH---IKHFTREVARRSYDTDMIVDGYEDYITEAM 606

Query: 971  DFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRNDMEQISIAMKSLRKEARGW 1030
              K  YDFKLGNLM +YGI++E E++ G IL+M K+F K++D + I +A++SLRKEAR  
Sbjct: 607  ALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSR 666

Query: 1031 FNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGMQRDHFLSFPWCVSDKLL 1090
            F+E       D+    +   AKASAWY+VTYHP +WG YNEG +R HF+SFPWC+ +KLL
Sbjct: 667  FSEMSLD---DNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLL 726

Query: 1091 QIKREKMCMINSSP 1102
            +IK+ +  +    P
Sbjct: 727  RIKQRRKFVRKMQP 730

[Close]
BLAST of Sed0009745 vs. ExPASy Swiss-Prot
Match: O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)

HSP 1 Score: 745.3 bits (1923), Expect = 9.7e-214
Identity = 441/1139 (38.72%), Postives = 667/1139 (58.56%), Query Frame = 0 

Query: 2    TTTNGRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSK 61
            TTTN  T+++    +   ADE+  +LE H G+ T+  + I   +D      FA V+FT+ 
Sbjct: 5    TTTNRSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTT- 64

Query: 62   LAAEYVVKKAEAEERLWFRDSYLKAR-----AVAAPMRRRNGVERMENVKGYFGNLVWED 121
            L  +   +   ++ +L F+   L+        +  P+  R  ++ +    G+  +   E 
Sbjct: 65   LEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPES--DEK 124

Query: 122  KMRVIWKGENWGMEFGTEDRKLSFHLSHGFDEYKMELPFENILGYQFYCPLDRSSKL--F 181
            +   + K +       TE R++ F +    D YK+E+ FE+I+     C    +S++  F
Sbjct: 125  RFCALEKWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAF 184

Query: 182  LIKVFAGSSKIFKKTPL-------SSSSPNSKKSTGFPWIRDVDFTPSSSIGQSSALCLE 241
            L+K+  G  K+FK+  +       S      K+   F WIR  DF+ S SIG S+  CLE
Sbjct: 185  LLKLKYG-PKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLE 244

Query: 242  LQPGDHLPSFFQTLVGFKQICARLELQPGSSSSSPSDLVPIVQR----LDIPFKILFKIN 301
            +  G  +   F  L  +++    L    G + +S + +VP++      L+ P++ILF++N
Sbjct: 245  VHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLN 304

Query: 302  SLVQHGYLP-GPALDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSL 361
            +LV    +    A D E  +++      +  +   L+KL      CY+P  ++K +  S+
Sbjct: 305  ALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSV 364

Query: 362  YSSKQLPWKPSVS----VDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFI 421
               K++   P+ +     +  ++   R  +TPSK+Y  GPE   +N VV+ F++ +  F+
Sbjct: 365  V--KKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFM 424

Query: 422  RVSFVDEELDKIRSSDLAPRSAD----KSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSA 481
            RV+FV+E+  K+ ++ L+  S +    K  RT +Y+R+ S+L  GI +G K+FEFLAFSA
Sbjct: 425  RVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSA 484

Query: 482  SQLRDNSFWMFASREGLSASDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEI 541
            SQLR NS WMFAS E + A DIR+WMG F  IR+++K AAR+GQ F +SR+TL V   ++
Sbjct: 485  SQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDV 544

Query: 542  EIIPDVEVVRKEIKYCFSDGIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAID 601
            E IPD+EV      YCFSDGIGKIS A A++VA++CG L H PSAFQIRY G+KGV+A+D
Sbjct: 545  EQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCG-LSHVPSAFQIRYGGYKGVIAVD 604

Query: 602  PTSTKKLSLRDSMLKYMSLDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEE 661
             +S +KLSLRDSMLK+ S +  L+V  W++  PC+LNR++I LLSTLGI+D +F   Q  
Sbjct: 605  RSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAV 664

Query: 662  AIYQLDSILKDSSKALEVLELMSPGEMTNILKEMLLL-YNPHEEPFLNMMLRTFRADKLL 721
             +  L ++L+D   AL VL+ +S     N+L +MLL  Y P  EP+L+MMLR     +L 
Sbjct: 665  HLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLS 724

Query: 722  DLKNKSRIFVPKGRTMMGCLDETRTLEYGQVFAQCSVP------------GKASKSSFVV 781
            +LK++ RI VPKGR ++GC+DE   LEYGQV+ + ++              K  + + VV
Sbjct: 725  ELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVV 784

Query: 782  KGKVVVAKNPCLHPGDVRVFDAVDVKTLHH--MVDCVVFPQKGKRPHPNECSGSDLDGDL 841
             GKVVV KNPCLHPGD+RV DA+          +DC++FPQKG+RPHPNECSG DLDGD 
Sbjct: 785  IGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQ 844

Query: 842  YFVSWDPELTCIRTVKPMSYEPAPTIQLNHDVTIEEVQEYLANYMVNDGLGGIANAHTVF 901
            +FVSWD ++       PM Y  +    ++HDVT+EE+ ++  +YM++D LG I+ AH V 
Sbjct: 845  FFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVH 904

Query: 902  ADKSPQKAMSSECIELAKLFSIAVDFPKTGVPANLPGSLRVKEYPDFMEKPHRPSYVSKG 961
            AD+ P+KA S +C+ELA L S AVDF KTG PA +P +L+ +E+PDF+E+  +P+Y+S+ 
Sbjct: 905  ADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISES 964

Query: 962  VFGKLFRGVKDVSSNINIIETFTREVASKCYDPDMEVDGFQNYLGEAFDFKTRYDFKLGN 1021
            VFGKL+R VK   S++   +       +  YD  +E  GF++++  A   +  Y  KL +
Sbjct: 965  VFGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTS 1024

Query: 1022 LMGYYGIETEPELVGGNILRMGKSFDKRND------MEQISIAMKSLRKEARGWFNEKGS 1081
            LM YYG   E E++ G IL+  + +  R++       ++I++++K L KEA GWF +   
Sbjct: 1025 LMIYYGAANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK--- 1084

Query: 1082 KCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGMQRDHFLSFPWCVSDKLLQIKRE 1093
             C     +D+ +    ASAWYYVTY+PN+        ++  FLSFPW V D LL IK E
Sbjct: 1085 SC-----EDEQQKKKLASAWYYVTYNPNHRD------EKLTFLSFPWIVGDVLLDIKAE 1116

[Close]
BLAST of Sed0009745 vs. ExPASy Swiss-Prot
Match: Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 706.1 bits (1821), Expect = 6.5e-202
Identity = 404/999 (40.44%), Postives = 582/999 (58.26%), Query Frame = 0 

Query: 136  RKLSFHLSHGFDEYKMELPFENI---LGYQFYCPLDRSSKLFLIKVFAGSSKIFKKTPLS 195
            R++  +L H    YK+E+ FE++   LG    C LD    + L   +A        T +S
Sbjct: 142  RRVDLYLEHDSQRYKLEVLFEDMKDCLG----CTLDGMGAILLQLNYAPRI----HTAIS 201

Query: 196  SSSPNS----------KKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDHLPSFFQTLV 255
              + NS          K+   F W+R +DFTP+ S G+ S L L+L     +    ++L 
Sbjct: 202  GPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSL- 261

Query: 256  GFKQICARLELQPGSSSSSPSDLVPIV---QRLDIPFKILFKINSLVQHGYLPGPALDDE 315
             F      L +       + S++VP+V   +   +P+++LF++NSL+  G +    ++ +
Sbjct: 262  PFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNAD 321

Query: 316  FFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQ--LPWKPSVSVD 375
             F+ +       D      EK+  L+  CY P ++++++  S+  S    L  +     +
Sbjct: 322  LFKAL--QELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGEGEGE 381

Query: 376  DGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSSDLAP 435
              L+  +RV ITPSK++  GPE  ++N VV+  S     F+RV+FVDE+  K+ S+ ++ 
Sbjct: 382  RKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNAISA 441

Query: 436  RSA----DKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGLSA 495
            R       K  +T +Y RI S+L+ G  IG K FEFLAFSASQLR NS WMFAS   L+A
Sbjct: 442  RIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNASLNA 501

Query: 496  SDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYCFSD 555
              IR WMG F NIR+V+K AAR+GQ F SSR+T  V + ++E+IPD+E+     KY FSD
Sbjct: 502  GGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYIFSD 561

Query: 556  GIGKISEAAAEKVAEECGL-LCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKYMS 615
            GIGKIS   A++VA   GL   + PSAFQIRY G+KGV+AIDP S+  LSLR SM K+ S
Sbjct: 562  GIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKKFES 621

Query: 616  LDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEV 675
                L++ SWSK  PCY+NR++I+LLSTLGI+D +FV  Q++ + + + +L +   AL V
Sbjct: 622  ESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVALSV 681

Query: 676  LELMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMGC 735
            L  +   E    +K +L  Y P  EP+L+M+L+  + ++L D++ + +I VPKGR ++GC
Sbjct: 682  LGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVLIGC 741

Query: 736  LDETRTLEYGQVFAQCSVPGKASKSS------------FVVKGKVVVAKNPCLHPGDVRV 795
            LDET  LEYGQV+ + +   K  K S              V GKV + KNPCLHPGD+RV
Sbjct: 742  LDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGDIRV 801

Query: 796  FDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYE 855
             +A+    L  MVDC+VFPQ+G+RPHPNECSG DLDGDLYF++WD +L   +   PM Y 
Sbjct: 802  LEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDTPMDYT 861

Query: 856  PAPTIQLNHDVTIEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFS 915
                  ++H VT+EE+Q++  +YM+ND LG I+ AH + AD+SP KA S EC++LA L S
Sbjct: 862  ATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQLATLHS 921

Query: 916  IAVDFPKTGVPANLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFR---GVKDVSSNINI 975
            +AVDF KTG PA +P +LR +EYPDFME+  +P Y+S GV GKL+R   G  + S +   
Sbjct: 922  MAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKSGDSGA 981

Query: 976  IETFTREVASKCYDPDMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNI 1035
            + + + +  S  YDPD+EV G   +L  A ++   Y+ KL  LM YY  E E E++ GNI
Sbjct: 982  LSSSSAQ-PSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEILTGNI 1041

Query: 1036 LRMGKSFDKRND------MEQISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKAS 1091
             R    + KR++       ++I  A+ +L +EARGW             + + +    AS
Sbjct: 1042 -RNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLL---------SSRKEEDASRMAS 1101

[Close]
BLAST of Sed0009745 vs. ExPASy Swiss-Prot
Match: Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)

HSP 1 Score: 571.2 bits (1471), Expect = 2.5e-161
Identity = 400/1081 (37.00%), Postives = 570/1081 (52.73%), Query Frame = 0 

Query: 94   RRRNGVE-RMENVKGYFGNLVWEDKMRVIWKGENWGMEFGTE----DRKLSFHLSHGFD- 153
            RRR  V  ++  +    G LV  D   V W+ E  G++F  +      K  F  S  F  
Sbjct: 123  RRRTTVPYKLAGITLEIGTLVSRDDFFVSWRAE--GVDFLVDPFDNTCKFCFRKSTAFSF 182

Query: 154  -----------EYKMELPFENILGYQFYCPLDRSSKLFLIKVFAGSSKIFKKT---PLSS 213
                       +YK+EL   +I   + Y  L       LI   A S +++ +T    +  
Sbjct: 183  KDAVMHAVINCDYKLELLVRDIQTVRQYKTL---HGFVLILQLASSPRVWYRTADDDIYD 242

Query: 214  SSPNSKKSTGFPWIRDVDFTPSSSIGQSSALCLELQP------GDHLPSFFQTLVGFKQI 273
            + P        PWIR  DFT   +IG+  +  + + P         L  F    V  +++
Sbjct: 243  TVPGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERV 302

Query: 274  --CARLELQPGSSSSSPSDLVPIVQRLDIPFKILFKINSLVQHGYLPGPALDDEFFQLVD 333
                R+  +P            I  +  I F+I+F +NS++  G      L + FF L+ 
Sbjct: 303  RWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLL- 362

Query: 334  PNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWKPSVSVDDGLVYIHR 393
                  D    +L+ L   K   ++ +K LK     +  + +L      S D  +  I R
Sbjct: 363  -RNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSED--ISEIRR 422

Query: 394  VQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSSDL----AP---- 453
            + ITP++ Y   PE  LSNRV+RR+    + F+RV+F+DE +  I S+ L    AP    
Sbjct: 423  LVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKD 482

Query: 454  -RSADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGLSASDI 513
              S+  S++T V+ R+ S+L +G  +  +K+ FLAFSA+QLRD S W FA       SDI
Sbjct: 483  LTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDI 542

Query: 514  RDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEI-IPDVEVVRKEIKYCFSDGI 573
            + WMG F + +NVAK AAR+G  F S+  T+ V   E++  +PD+E       Y FSDGI
Sbjct: 543  KTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGI 602

Query: 574  GKISEAAAEKVAEECGLLCH-TPSAFQIRYAGFKGVVAIDPTSTK--KLSLRDSMLKYMS 633
            G I+   A++V E+  L  H +P A+QIRYAGFKGVVA  P+ +   +L+LRDSM K+ S
Sbjct: 603  GTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFS 662

Query: 634  LDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEV 693
              T L++ SW+++ P +LNRQ+I LLS LG+ D +F   QE  +Y+L+ IL D+  A EV
Sbjct: 663  KHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEV 722

Query: 694  LELMSPGEMTNILKEMLLL-YNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMG 753
            L   S  E  N    ML   + P  EP L  ML + R  +L  L+ KSRIFV  GR +MG
Sbjct: 723  L-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMG 782

Query: 754  CLDETRTLEYGQVFAQCSVPG------------KASKSSF-VVKGKVVVAKNPCLHPGDV 813
            CLDE   LE+GQ F Q S P             K +K+   VVKG V +AKNPCLHPGDV
Sbjct: 783  CLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDV 842

Query: 814  RVFDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPEL--TCIRTVKP 873
            R+ +AVDV  LHHM DC++FPQKG RPH NE SGSDLDGDLYFV+WD +L     ++   
Sbjct: 843  RILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPA 902

Query: 874  MSYEPAPTIQLNHDVTIEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELA 933
            M Y+ A    L   V  +++ ++ A  + N+ LG I NAH V AD+S   AM  EC+ LA
Sbjct: 903  MHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLA 962

Query: 934  KLFSIAVDFPKTGVPANLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDV-SSNI 993
            +L + AVDFPKTG   ++P  L+ K YPDFM K    +Y S  + G+L+R VK+V   + 
Sbjct: 963  ELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDA 1022

Query: 994  NIIETFTREVASKCYDPDMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGG 1053
                  + + ++  YD  +E+ GF++ + EA+  K  YD +L  L+G Y ++ E E+V G
Sbjct: 1023 EASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTG 1082

Query: 1054 NILRMGKSFDKRND--MEQISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGF-AKASA 1106
            +I  M K   K+     E++  +  SL+KE R  F E         +++ N  +  KASA
Sbjct: 1083 HIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASA 1142

[Close]
BLAST of Sed0009745 vs. ExPASy TrEMBL
Match: A0A6J1EB47 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111430971 PE=3 SV=1)

HSP 1 Score: 1775.4 bits (4597), Expect = 0.0e+00
Identity = 881/1123 (78.45%), Postives = 989/1123 (88.07%), Query Frame = 0 

Query: 4    TNGRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSKLA 63
            T G+TIE++GF R+ +A EVK ++ENHTG+GT+S V ISKPK +K+R T A V F SK+A
Sbjct: 3    TKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSKVA 62

Query: 64   AEYVVKKAEAEERLWFRDSYLKARAVAAPMRRRNGV---ERMENVKGYFGNLVWEDKMRV 123
            AEYVV+KAEAEERLWF   YLKAR V     R   V   ER+E V+   G+++W+D+MRV
Sbjct: 63   AEYVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEMRV 122

Query: 124  IWKGENWGMEFGTEDRKLSFHLSHGF--DEYKMELPFENILGYQFYCPLDRSSKLFLIKV 183
            IW+GE+W +E+G   RKL F+LS+G   D+YKMEL FENILG Q  CP + SS LFLI++
Sbjct: 123  IWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQL 182

Query: 184  FAGSSKIFKKTPLSSSSPN----SKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDHL 243
              G+ +IFKK P SSSS +    SK+STGF WIRDVDFTPSS IGQS ALC E+ PGD L
Sbjct: 183  -QGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQL 242

Query: 244  PSFFQTLVGFKQICARLELQPGSSSSSPSDLVPIV---QRLDIPFKILFKINSLVQHGYL 303
            PSFFQTLVG+K+I    +L  GS+ SS S+LVPIV   Q   IP+KILFKIN+LVQHGYL
Sbjct: 243  PSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYL 302

Query: 304  PGPALDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWK 363
            PG ALDD+FF+LVDP RFRSDYIEYALEKLF+LKECCYEP KWLK++YLS  SS QLPWK
Sbjct: 303  PGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWK 362

Query: 364  PSVSVDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIR 423
             ++S+DD LVY+HRVQITP+KVYFRGPEANLSNRVVRRF DDID+F+RVSFVDEELDKI 
Sbjct: 363  ANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIY 422

Query: 424  SSDLAPR-SADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREG 483
            SSDL+PR S +K ERTRVYDRI SVLRNGIVIG KKFEFLAFSASQLR+NSFWMFASREG
Sbjct: 423  SSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREG 482

Query: 484  LSASDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYC 543
            L+A+DIR+WMGDF  IRNVAKYAARLGQSFGSSRKTLCVE++EIE+IPDVEV RK IKYC
Sbjct: 483  LNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYC 542

Query: 544  FSDGIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKY 603
            FSDGIGKISEA AE VAE+CGL+ HTPSAFQIRYAG+KGVVA+DPTS KKLSLR SMLKY
Sbjct: 543  FSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKY 602

Query: 604  MSLDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKAL 663
            MSLDTQLDVLSWSKY PC+LNRQVINLLSTLGIQD VFVK+Q++A+ QLDSIL+D SKAL
Sbjct: 603  MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKAL 662

Query: 664  EVLELMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMM 723
            EVLELMSPGEMT++LK+MLL YNPHEEPFLNMMLRTFRADKLLDL+ KSRIFVP+GRTMM
Sbjct: 663  EVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTMM 722

Query: 724  GCLDETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLH 783
            GCLDETRTLEYGQVF  CSVPG++S+S+FVVKGKVVVAKNPCLHPGDVRV DAVDVKTLH
Sbjct: 723  GCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLH 782

Query: 784  HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNHD 843
            HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFV WDPELTCIR +KPMSYEPAPTIQL+HD
Sbjct: 783  HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHD 842

Query: 844  VTIEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTGV 903
            VTIEEVQEY ANYMVNDGLGGIANAHTVFADK P+KAMS+ECIELAKLFSIAVDFPKTGV
Sbjct: 843  VTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGV 902

Query: 904  PANLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKCY 963
            PANLP SLRV EYPDFMEKP++ +Y S GV GKLFRGVKDVSS+IN IETFTREVA+KCY
Sbjct: 903  PANLPRSLRVHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCY 962

Query: 964  DPDMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRNDM 1023
            DPDMEV GF+NYL EAFD+K+ YDFKLGNLM YYGIETEPELV GNILRMGKSFDKRNDM
Sbjct: 963  DPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDM 1022

Query: 1024 EQISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGM 1083
            EQIS+AM+SLRKEARGWFNEKGSK  Y+++KD+++ +AKASAWY+VTYHPN+WG YNEGM
Sbjct: 1023 EQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGM 1082

Query: 1084 QRDHFLSFPWCVSDKLLQIKREKMCMINSSPVSSLINKFGKLS 1114
            QRDHFLSFPWCVS+KL+QIKREKM    SSPVSSLI+KFGKLS
Sbjct: 1083 QRDHFLSFPWCVSEKLIQIKREKM---ESSPVSSLIHKFGKLS 1121

[Close]
BLAST of Sed0009745 vs. ExPASy TrEMBL
Match: A0A6J1JTB1 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111487656 PE=3 SV=1)

HSP 1 Score: 1775.0 bits (4596), Expect = 0.0e+00
Identity = 881/1119 (78.73%), Postives = 986/1119 (88.11%), Query Frame = 0 

Query: 4    TNGRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSKLA 63
            TNG+TIE++GFRR+ +A EVK ++ENHTG+GT+S V ISKPKD K R TFA V F SK+A
Sbjct: 3    TNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVA 62

Query: 64   AEYVVKKAEAEERLWFRDSYLKARAVAAPMRRRNGVERMENVKGYFGNLVWEDKMRVIWK 123
            AEYVV+KAEAEE LWF   YLKAR V   MR    VERME V+   G+++ +++MRVIW+
Sbjct: 63   AEYVVEKAEAEEGLWFGRWYLKARGVEREMR----VERMEKVRVQLGSVISKEEMRVIWR 122

Query: 124  GENWGMEFGTEDRKLSFHLSHGF--DEYKMELPFENILGYQFYCPLDRSSKLFLIKVFAG 183
            GE W +E+G   RKL F+LS+G   D+YKMEL FENILG Q  CP + SS LFLI++  G
Sbjct: 123  GEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQL-QG 182

Query: 184  SSKIFKKTPLSSSSPN---SKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDHLPSFF 243
            + +IFKK P SSSS +   SK+STGF WIRDVDFTPSS IGQS +LCLE+ PGD LPSFF
Sbjct: 183  APRIFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSFF 242

Query: 244  QTLVGFKQICARLELQPGSSSSSPSDLVPIV---QRLDIPFKILFKINSLVQHGYLPGPA 303
            QTLVG+K+I    +L  GS+ SS S+LVPIV   Q  DIP+KILFKIN+LVQHGYLPG A
Sbjct: 243  QTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSA 302

Query: 304  LDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWKPSVS 363
            LDD+FF+LVDP+RFRSDYIEYALEKLF+LKECCYEP KWLK++YLS  SS QLPWK ++S
Sbjct: 303  LDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANIS 362

Query: 364  VDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSSDL 423
            +DD LVY+HRVQITP+KVYFRGPEANLSNRVVRRF DDID+F+RVSFVDEELDKI SSDL
Sbjct: 363  LDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDL 422

Query: 424  APR-SADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGLSAS 483
            +PR S +K ERTRVYDRI SVLRNGIVIG KKFEFLAFSASQLR+NSFWMFASREGL+A+
Sbjct: 423  SPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAA 482

Query: 484  DIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYCFSDG 543
            DIR+WMGDF  IRNVAKYAARLGQSFGSSRKTLCVE++EIE+IPD EV RK IKYCFSDG
Sbjct: 483  DIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDG 542

Query: 544  IGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKYMSLD 603
            IGKISEA AE VAE+CGL+ HTPSAFQIRYAG+KGVVA+DPTS KKLSLR SMLKYMSLD
Sbjct: 543  IGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLD 602

Query: 604  TQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEVLE 663
            TQLDVLSWSKY PC+LNRQVINLLSTLGI+D VFVK+Q++A+ QLDSIL+D SKALEVLE
Sbjct: 603  TQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLE 662

Query: 664  LMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMGCLD 723
            LMSPGEMT++LK+MLL YNPHEEPFLNMMLRTFRADKLLDL+ KSRIFVPKGRTMMGCLD
Sbjct: 663  LMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLD 722

Query: 724  ETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLHHMVD 783
            ETRTLEYGQVF  CSVPG++S+S+FVVKGKVVVAKNPCLHPGDVRV DAVDVKTLHHMVD
Sbjct: 723  ETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVD 782

Query: 784  CVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNHDVTIE 843
            CVVFPQKGKRPHPNECSGSDLDGDLYFV WDPELTCIR +KPMSYEPAPTIQL+HDVT+E
Sbjct: 783  CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLE 842

Query: 844  EVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTGVPANL 903
            EVQEY ANYMVNDGLGGIANAHTVFAD  P+KAMS+ECIELAKLFSIAVDFPKTGVPANL
Sbjct: 843  EVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANL 902

Query: 904  PGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKCYDPDM 963
            P SLRV EYPDFMEKP++ +Y+S GV GKLFRGVKDVSS+IN IETFTREVA KCYDPDM
Sbjct: 903  PRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDM 962

Query: 964  EVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRNDMEQIS 1023
            EV GF+NYL EAFD+K  YDFKLGNLM YYGIETEPELV GNILRMGKSFDKRNDMEQIS
Sbjct: 963  EVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQIS 1022

Query: 1024 IAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGMQRDH 1083
            +AM+SLRKEARGWFNEK SK  Y+++K ++  +AKASAWY+VTYHPN+WG YNEGMQRDH
Sbjct: 1023 LAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDH 1082

Query: 1084 FLSFPWCVSDKLLQIKREKMCMINSSPVSSLINKFGKLS 1114
            FLSFPWCVSDKL+QIKREKM    SSPVSSLI+KFGKLS
Sbjct: 1083 FLSFPWCVSDKLIQIKREKM---ESSPVSSLIHKFGKLS 1113

[Close]
BLAST of Sed0009745 vs. ExPASy TrEMBL
Match: A0A6J1FF44 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444909 PE=3 SV=1)

HSP 1 Score: 1731.5 bits (4483), Expect = 0.0e+00
Identity = 855/1113 (76.82%), Postives = 968/1113 (86.97%), Query Frame = 0 

Query: 1    MTTTN--GRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRF 60
            M TTN  G+TIE+YGF    TADEVK ++ENHTGDGT+ TV ISK  D+K RFTFATV+F
Sbjct: 1    MATTNDMGKTIEIYGFPTQVTADEVKEFIENHTGDGTVLTVRISKLNDEKARFTFATVQF 60

Query: 61   TSKLAAEYVVKKAEAEERLWFRDSYLKARAVAAPM----RRRNGVERMENVKGYFGNLVW 120
            TSKL  EYVV +A AE+RLWF  SYLKAR V   +    R    +ERMENV   +G+LV 
Sbjct: 61   TSKLGGEYVVAQAAAEKRLWFGSSYLKARKVEREIKTAARVHGELERMENVNVQWGSLVS 120

Query: 121  EDKMRVIWKGENWGMEFGTEDRKLSFHLSHGFDEYKMELPFENILGYQFYCPLDRSSKLF 180
            +++M+VIWKG  W +E+G   RKL F+LS+   EYKMEL FENILG Q  C +DR SKLF
Sbjct: 121  KEEMKVIWKGGKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGVQLRCSVDRGSKLF 180

Query: 181  LIKVFAGSSKIFKKTPLSSSSP-NSKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDH 240
            LI++  G+ +IFKK PLSSSS  +S++STGF WIRDVDFTPSS IGQS ALCLEL  GD 
Sbjct: 181  LIQL-QGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQ 240

Query: 241  LPSFFQTLVGFKQICARLELQPGSSSSSPSDLVPIV---QRLDIPFKILFKINSLVQHGY 300
            LPSFFQTLVG+K+  A   LQ GSS SS S+LVPI+   Q  DIP+KILFKIN+L+QHGY
Sbjct: 241  LPSFFQTLVGYKESYAPFILQTGSSLSSISNLVPIITPPQGFDIPYKILFKINALLQHGY 300

Query: 301  LPGPALDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPW 360
            LPGPALD+EFF+LVD +RFR DY+EYAL+KLF+ KECCYEP KWLK++YLS YSSKQLPW
Sbjct: 301  LPGPALDNEFFRLVDSSRFRPDYVEYALDKLFHFKECCYEPQKWLKQQYLSFYSSKQLPW 360

Query: 361  KPSVSVDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKI 420
            KP++S+DDGLVY+HRVQITP+KVYFRGPEANLSNRVVR F DD+D+F+RVSFVDEELDK+
Sbjct: 361  KPNISLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKL 420

Query: 421  RSSDLAPR-SADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASRE 480
             S DL+PR SA+   RTRVYDR+ SVLRNGIVIG+KKFEFLAFSASQLR+NS WMFASR+
Sbjct: 421  HSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRK 480

Query: 481  GLSASDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKY 540
            GLSA+DIR+WMGD   IRNVAKYAARLGQSFGSSR+TLCVE+ EIE+I DVEV   +I Y
Sbjct: 481  GLSAADIREWMGDLRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITY 540

Query: 541  CFSDGIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLK 600
            CFSDGIGKIS   AEKVAE+CGL+ HTPSAFQIRYAG+KGVVAIDPTSTKKLSLR SMLK
Sbjct: 541  CFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLK 600

Query: 601  YMSLDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKA 660
            Y SLDTQ+DVLSWSKY PC+LNRQVINLLSTLGI+D VFVKKQ+EAI QLDSIL+D S+A
Sbjct: 601  YTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRA 660

Query: 661  LEVLELMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTM 720
            LEVLELMSPGEMT+ILKE+LLLY P+EEPFLNMMLRTFRA KLLDL+ KSRIFVPKGRTM
Sbjct: 661  LEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTM 720

Query: 721  MGCLDETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTL 780
            MGCLDETRTLEYGQVF  CS+PG++S+S+FVVKGKVVVAKNPCLHPGDVR+ DAVDVK L
Sbjct: 721  MGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKAL 780

Query: 781  HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNH 840
            HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFV WDPELT I+ VKPMSYEPAPT+QL+H
Sbjct: 781  HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMQLDH 840

Query: 841  DVTIEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTG 900
            DVTIEEVQ YL  YMVNDGLGGIANAHTVFADK P+KAM++ECI+LAKLFSIAVDFPKTG
Sbjct: 841  DVTIEEVQGYLVKYMVNDGLGGIANAHTVFADKKPKKAMAAECIKLAKLFSIAVDFPKTG 900

Query: 901  VPANLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKC 960
            VPAN P +LRV+EYPDFMEKP +P+YVS GV GKLFRGVKDVSS++N +E F+REVA+KC
Sbjct: 901  VPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKC 960

Query: 961  YDPDMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRND 1020
            YDPDMEVDGF++YL EAF+FK RYDFKLGNLM YYGI+TEPEL+ GNILRM KSFDKRND
Sbjct: 961  YDPDMEVDGFEDYLSEAFEFKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRND 1020

Query: 1021 MEQISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEG 1080
            MEQIS+AMKSLRKEAR WFNEKGSK AYD+D + NE +AKASAWY VTYHP+YWG YNEG
Sbjct: 1021 MEQISLAMKSLRKEARSWFNEKGSKSAYDEDDNKNEEYAKASAWYRVTYHPDYWGRYNEG 1080

Query: 1081 MQRDHFLSFPWCVSDKLLQIKREKMCMINSSPV 1103
            MQRDHFLSFPWCVSDKL+QIKREK C++N SPV
Sbjct: 1081 MQRDHFLSFPWCVSDKLIQIKREKTCLVNFSPV 1112

[Close]
BLAST of Sed0009745 vs. ExPASy TrEMBL
Match: A0A6J1K1Q3 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489826 PE=3 SV=1)

HSP 1 Score: 1723.0 bits (4461), Expect = 0.0e+00
Identity = 855/1118 (76.48%), Postives = 971/1118 (86.85%), Query Frame = 0 

Query: 1    MTTTN--GRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRF 60
            M TTN  G+ IE+YGF  + TADEVK ++ENHTGDGT+ TV ISKP D+K RFTFATVRF
Sbjct: 1    MATTNDMGKMIEIYGFPAEVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRF 60

Query: 61   TSKLAAEYVVKKAEAEERLWFRDSYLKARAV---------AAPMRRRNGVERMENVKGYF 120
            TSKL  EYVV +A AE+RLWF  SYLKAR V         AA  R   G+ERMENV   +
Sbjct: 61   TSKLGGEYVVAQAAAEKRLWFGSSYLKARKVEREIRTATAAAAARVHGGLERMENVNVQW 120

Query: 121  GNLVWEDKMRVIWKGENWGMEFGTEDRKLSFHLSHGFDEYKMELPFENILGYQFYCPLDR 180
            G+LV ++KM+VIWK   W +E+G   RKL F+LS+   EYKMEL FENILG Q  C  DR
Sbjct: 121  GSLVSKEKMKVIWKEGKWSVEYGIGARKLGFYLSYEGVEYKMELCFENILGVQLRCSGDR 180

Query: 181  SSKLFLIKVFAGSSKIFKKTPLSSSSP-NSKKSTGFPWIRDVDFTPSSSIGQSSALCLEL 240
             S+LFLI++  G+ +IFKKTP SSSS  +S++STGF WIRDVDFTPSS IGQS ALCLEL
Sbjct: 181  GSELFLIQL-QGAPRIFKKTPSSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLEL 240

Query: 241  QPGDHLPSFFQTLVGFKQICARLELQPGSSSSSPSDLVPIV---QRLDIPFKILFKINSL 300
             PGD LPSFF+TLVG+K+  A   L PGSS SS S+LVPI+   Q  DI +KILFKIN+L
Sbjct: 241  SPGDQLPSFFRTLVGYKESYAPFILHPGSSLSSISNLVPIITPPQGFDISYKILFKINAL 300

Query: 301  VQHGYLPGPALDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSS 360
            +QHGYLPGPALD+EFF+LVD +RFR +YIEYALEKLF+ KECCYEP KWLK++YLS YSS
Sbjct: 301  LQHGYLPGPALDNEFFRLVDSSRFRPEYIEYALEKLFHFKECCYEPQKWLKQQYLSFYSS 360

Query: 361  KQLPWKPSVSVDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDE 420
            KQLP KP+VS+DDGLVY+HRVQITP+KVYFRGPEANLSNRVVR F DD+D+F+RVSFVDE
Sbjct: 361  KQLPCKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDE 420

Query: 421  ELDKIRSSDLAPR-SADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWM 480
            ELDK+ S DL+PR SA+   RTRVYDR+ SVLRNGIVIG+KKFEFLAFSASQLR+NS WM
Sbjct: 421  ELDKLHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWM 480

Query: 481  FASREGLSASDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVR 540
            FASR+GLSA+DIR+WMGDF  IRNVAKYAARLGQSFGSSR+TLCVE+ EIE+IPDVEV  
Sbjct: 481  FASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVIPDVEVET 540

Query: 541  KEIKYCFSDGIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLR 600
             +I YCFSDGIGKIS   AEKVAE+CGL+ HTPSAFQIRYAG+KGVVAIDPTSTKKLSLR
Sbjct: 541  NKITYCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLR 600

Query: 601  DSMLKYMSLDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILK 660
             SMLKY SLDTQ+DVLSWSKY PC+LNRQVINLLSTLGI+D VFVKKQ+EAI QLDSIL+
Sbjct: 601  KSMLKYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILE 660

Query: 661  DSSKALEVLELMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVP 720
            D S+ALEVLELMSPGEMT+ILKE+LLLY P+EEPFLNMMLRTFRA KLLDL+ KSRIFVP
Sbjct: 661  DPSRALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVP 720

Query: 721  KGRTMMGCLDETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAV 780
            KGRTMMGCLDETRTLEYGQVF  CS+PG++S+S+FVVKGKVVVAKNPCLHPGDVR+ DAV
Sbjct: 721  KGRTMMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAV 780

Query: 781  DVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPT 840
            DVK LHHMV+CVVFPQKG+RPHPNECSGSDLDGDLYFV WDPELT I+ VKPMSYEPAPT
Sbjct: 781  DVKALHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPT 840

Query: 841  IQLNHDVTIEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVD 900
            ++L+HDVTIEEVQEYLA YMVNDGLGGIANAHTVFADK P+KAM++ECI+LAKLFSIAVD
Sbjct: 841  MRLDHDVTIEEVQEYLAKYMVNDGLGGIANAHTVFADKKPKKAMTAECIKLAKLFSIAVD 900

Query: 901  FPKTGVPANLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTRE 960
            FPKTGVPAN P +LRV+EYPDFMEKP +P+YVS GV GKLFRGVKDVSS++N IE F+RE
Sbjct: 901  FPKTGVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTIEIFSRE 960

Query: 961  VASKCYDPDMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSF 1020
            VA+KCYDPDMEVDGF++YL EAF++K RYDFKLGNLM YYGI+TEPEL+ GNILRM KSF
Sbjct: 961  VATKCYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSF 1020

Query: 1021 DKRNDMEQISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWG 1080
            DKRND+EQIS+A+KSLRKEAR WFNEKGSK A D+D D +E +AKASAWY VTYHP+YWG
Sbjct: 1021 DKRNDLEQISLAIKSLRKEARSWFNEKGSKSACDED-DKDEEYAKASAWYRVTYHPDYWG 1080

Query: 1081 LYNEGMQRDHFLSFPWCVSDKLLQIKREKMCMINSSPV 1103
             YNEGMQRDHFLSFPWCVSDKL+QIKREK C++N SP+
Sbjct: 1081 RYNEGMQRDHFLSFPWCVSDKLIQIKREKTCLVNLSPI 1116

[Close]
BLAST of Sed0009745 vs. ExPASy TrEMBL
Match: A0A0A0KRH3 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=1)

HSP 1 Score: 1700.6 bits (4403), Expect = 0.0e+00
Identity = 843/1116 (75.54%), Postives = 955/1116 (85.57%), Query Frame = 0 

Query: 6    GRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSKLAAE 65
            G+TIE+YGFR   TADEVK +LENHTGDGT+STV ISKPKD+K RFT  TV F SKLAAE
Sbjct: 2    GKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAE 61

Query: 66   YVVKKAEAEER-LWFRDSYLKARAV--AAPMRRRNGV---ERMENVKGYFGNLVWEDKMR 125
            Y+V K+  EER LWF  SYLKAR +  A   +   GV   ERME+VKG+ G+++   KMR
Sbjct: 62   YIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKMR 121

Query: 126  VIWKGENWGMEFGTEDRKLSFHLSHGFDEYKMELPFENILGYQFYCPLDRSSKLFLIKVF 185
            VIW+GE W +EFG   RKL F+LS+  DEYKMEL FENIL  +F CPL+  SK FLI++ 
Sbjct: 122  VIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL- 181

Query: 186  AGSSKIFKKTPLSSSSP-NSKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDHLPSFF 245
             G+ +IF+KTP SSSSP  S KST F WIRDVDFTPSS IGQS  +CL+L P  HLP FF
Sbjct: 182  QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 241

Query: 246  QTLVGFKQICARLELQPGSSSSSPSDLVPIV---QRLDIPFKILFKINSLVQHGYLPGPA 305
            QTLVG+K   A   L  GSS  S S+LVPI+   Q  DI +KILFKIN+L+QHGYL GP 
Sbjct: 242  QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 301

Query: 306  LDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWKPSVS 365
            LDDEFF+LVD +RF SDYI++ALEKLFNLKECCY+P KWLK++YLS Y+S QLPWK ++S
Sbjct: 302  LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 361

Query: 366  VDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSSDL 425
            +DDGLVY+HRVQITP KVYF GPEANLSNRVVRRF  DID+F+RVSFVDEELDK+ S DL
Sbjct: 362  LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 421

Query: 426  APRSA--DKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGLSA 485
            APRS+  + S+RTRVYDR+ SVL+NGIVIG KKFEFLAFSASQLR+NSFWMFASREGLSA
Sbjct: 422  APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 481

Query: 486  SDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYCFSD 545
            +DIR+WMGDF +IRNVAKYAARLGQSFGSSRKTLCVE+ EIE+IPDVEV RK I YCFSD
Sbjct: 482  ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 541

Query: 546  GIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKYMSL 605
            GIGKIS+  A+KVAE+CGL+ HTPSAFQIRYAG+KGVVAIDPTS KKLSLR+SMLKYMSL
Sbjct: 542  GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 601

Query: 606  DTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEVL 665
            DTQLDVLSWSKY PC+LNRQVINLLSTLGI D VFVKKQ+EAI QLDSIL+D S+ALEVL
Sbjct: 602  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 661

Query: 666  ELMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMGCL 725
            ELMSPGEMT+ILKE+L  Y P+EEPFLNMMLRTFRA+KLLDLK KSRIFVP+GRTM+GCL
Sbjct: 662  ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 721

Query: 726  DETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLHHMV 785
            DETRTLEYGQVF  CSVP ++S+ +FVVKGK+VVAKNPCLHPGDVRV DAVDVK LHHMV
Sbjct: 722  DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 781

Query: 786  DCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNHDVTI 845
            DCVVFPQKGKRPHPNECSGSDLDGDLYF  WD ELTCI+ VKPM+YEPAPTIQLNHDVTI
Sbjct: 782  DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 841

Query: 846  EEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTGVPAN 905
            EE+QEY ANYMVNDG+G IANAHTVFADK+ +KAMS ECI+LAKLFSIAVDFPKTGVPAN
Sbjct: 842  EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 901

Query: 906  LPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKCYDPD 965
            LP +LRV EYPDFM+KP++P+YVS GV GKLFRGVKDVSS++N  E FTREVA+K YDPD
Sbjct: 902  LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 961

Query: 966  MEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRNDMEQI 1025
            MEVDGF+ YL EAFD+KT+YDFKLGNLM YYGI+TEPELV GN+L+M KSFDKRND+EQI
Sbjct: 962  MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1021

Query: 1026 SIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGMQRD 1085
            + AMKSLRKE R WFNE  SK  YDD +D+   +AKASAWYYVTYHP+YWG YNEGMQRD
Sbjct: 1022 TFAMKSLRKEVRSWFNENESKFTYDDIEDE---YAKASAWYYVTYHPDYWGCYNEGMQRD 1081

Query: 1086 HFLSFPWCVSDKLLQIKREKMCMINSSPVSSLINKF 1110
            HFLSFPWCV+DKL+QIKR+KM + NS PVSSL + F
Sbjct: 1082 HFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNF 1113

[Close]
BLAST of Sed0009745 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 1165.6 bits (3014), Expect = 0.0e+00
Identity = 610/1102 (55.35%), Postives = 782/1102 (70.96%), Query Frame = 0 

Query: 6    GRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSKLAAE 65
            G+TI+++GF    +A+EVK +LE  TG GT+  + + +PK    R  +A V+FTS+    
Sbjct: 2    GKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPR-VYAIVQFTSERHTR 61

Query: 66   YVVKKAEAEERLWFRDSYLKARAVAAPM--RRRNGVERMENVKGYFGNLVWEDKMRVIWK 125
             ++    A ERL++  SYLKA  V   +  + R  +  +  +K +FG  V   K   +W 
Sbjct: 62   LII--TAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 121

Query: 126  GENWGMEFGTEDRKLSFHLSHGFDEYKMELPFENILGYQFYCPLDRSSKLFLIKVFAGSS 185
             ++  + FG   RKL F  S    +Y++EL +ENI     + P  RSSK  +I+V  G+ 
Sbjct: 122  AQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVI-GAP 181

Query: 186  KIFKKTP-----LSSSSPNSKKSTGFPWIRDVDFTPSSSIGQSSALCLELQPGDHLPSFF 245
            KIF+K       L          +   WIR  DFT SS IGQS+A CLEL    ++P F 
Sbjct: 182  KIFEKEDQPINLLFGIMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFR 241

Query: 246  QTLVGF-KQICARLELQPGSS-SSSPSDLVPIVQ---RLDIPFKILFKINSLVQHGYLPG 305
            +    + +   +   ++ GSS SS+ + LVP+V       +PF+ILFK+N+LVQ+  L G
Sbjct: 242  ENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSG 301

Query: 306  PALDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWKPS 365
            PALD +F++L++  ++    I++ LEKLF+L ECCYEP  WL+++Y    S  +LP  P+
Sbjct: 302  PALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPT 361

Query: 366  VSVDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSS 425
            +S+DDGLVY++RVQ+TP++VYF GPE N+SNRV+R +S  I++F+RVSFVDE+L+K+RS 
Sbjct: 362  ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 421

Query: 426  DLAPRSADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGLSA 485
            DL+PRS+ +  RT++YDRI+SVLR+GIVIG+KKFEFLAFS+SQLR+NS WMFA  + ++A
Sbjct: 422  DLSPRSSTQ-RRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITA 481

Query: 486  SDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEIIPDVEVVRKEIKYCFSD 545
            + IR WMGDF +IRNVAKYAARLGQSF SSR+TL V   EIE+IPDVE++    +Y FSD
Sbjct: 482  AHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSD 541

Query: 546  GIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAIDPTSTKKLSLRDSMLKYMSL 605
            GIGKIS   A KVA +CGL   +PSAFQIRY G+KGVVA+DP S+KKLSLR SM K+ S 
Sbjct: 542  GIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESE 601

Query: 606  DTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEVL 665
            +T+LDVL+WSKY PCY+NRQ+I LLSTLG+ D VF KKQ E + +LD+IL    +A E L
Sbjct: 602  NTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEAL 661

Query: 666  ELMSPGEMTNILKEMLLL-YNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMGC 725
             LM+PGE TNILK ++L  Y P  EPFL+MML+ FRA KLL+L+ K+RIF+  GR+MMGC
Sbjct: 662  GLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGC 721

Query: 726  LDETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLHHM 785
            LDETRTLEYGQV  Q S P +  +  F++ G VVVAKNPCLHPGDVRV  AV+V  L+HM
Sbjct: 722  LDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNVPALNHM 781

Query: 786  VDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKPMSYEPAPTIQLNHDVT 845
            VDCVVFPQKG RPHPNECSGSDLDGD+YFV WD EL   RT +PM Y P PT  L+HDVT
Sbjct: 782  VDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDHDVT 841

Query: 846  IEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELAKLFSIAVDFPKTGVPA 905
            IEEV+EY ANY+VND LG IANAHT FADK P KA S  CIELAK FS AVDFPKTGV A
Sbjct: 842  IEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAA 901

Query: 906  NLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDVSSNINIIETFTREVASKCYDP 965
             +P  L VKEYPDFMEKP +P+Y SK V GKLFR VK+ +  +  I++FT +VASK YD 
Sbjct: 902  VIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKSYDK 961

Query: 966  DMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGGNILRMGKSFDKRNDMEQ 1025
            DMEVDGF+ Y+ EAF  K  YDFKLGNLM YYGI+TE E++ G I+RM KSF KR D E 
Sbjct: 962  DMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAES 1021

Query: 1026 ISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGMQR 1085
            I  A+++LRKE    FN          ++++NE  AKASAWY+VTYH +YWGLYNEG+ R
Sbjct: 1022 IGRAVRALRKETLSLFNA--------SEEEENES-AKASAWYHVTYHSSYWGLYNEGLNR 1081

Query: 1086 DHFLSFPWCVSDKLLQIKREKM 1095
            DHFLSF WCV DKL++IK+  +
Sbjct: 1082 DHFLSFAWCVYDKLVRIKKTNL 1088

[Close]
BLAST of Sed0009745 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 745.3 bits (1923), Expect = 6.9e-215
Identity = 441/1139 (38.72%), Postives = 667/1139 (58.56%), Query Frame = 0 

Query: 2    TTTNGRTIELYGFRRDTTADEVKNYLENHTGDGTISTVNISKPKDKKTRFTFATVRFTSK 61
            TTTN  T+++    +   ADE+  +LE H G+ T+  + I   +D      FA V+FT+ 
Sbjct: 5    TTTNRSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTT- 64

Query: 62   LAAEYVVKKAEAEERLWFRDSYLKAR-----AVAAPMRRRNGVERMENVKGYFGNLVWED 121
            L  +   +   ++ +L F+   L+        +  P+  R  ++ +    G+  +   E 
Sbjct: 65   LEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPES--DEK 124

Query: 122  KMRVIWKGENWGMEFGTEDRKLSFHLSHGFDEYKMELPFENILGYQFYCPLDRSSKL--F 181
            +   + K +       TE R++ F +    D YK+E+ FE+I+     C    +S++  F
Sbjct: 125  RFCALEKWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAF 184

Query: 182  LIKVFAGSSKIFKKTPL-------SSSSPNSKKSTGFPWIRDVDFTPSSSIGQSSALCLE 241
            L+K+  G  K+FK+  +       S      K+   F WIR  DF+ S SIG S+  CLE
Sbjct: 185  LLKLKYG-PKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLE 244

Query: 242  LQPGDHLPSFFQTLVGFKQICARLELQPGSSSSSPSDLVPIVQR----LDIPFKILFKIN 301
            +  G  +   F  L  +++    L    G + +S + +VP++      L+ P++ILF++N
Sbjct: 245  VHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLN 304

Query: 302  SLVQHGYLP-GPALDDEFFQLVDPNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSL 361
            +LV    +    A D E  +++      +  +   L+KL      CY+P  ++K +  S+
Sbjct: 305  ALVHAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSV 364

Query: 362  YSSKQLPWKPSVS----VDDGLVYIHRVQITPSKVYFRGPEANLSNRVVRRFSDDIDSFI 421
               K++   P+ +     +  ++   R  +TPSK+Y  GPE   +N VV+ F++ +  F+
Sbjct: 365  V--KKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFM 424

Query: 422  RVSFVDEELDKIRSSDLAPRSAD----KSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSA 481
            RV+FV+E+  K+ ++ L+  S +    K  RT +Y+R+ S+L  GI +G K+FEFLAFSA
Sbjct: 425  RVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSA 484

Query: 482  SQLRDNSFWMFASREGLSASDIRDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEI 541
            SQLR NS WMFAS E + A DIR+WMG F  IR+++K AAR+GQ F +SR+TL V   ++
Sbjct: 485  SQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDV 544

Query: 542  EIIPDVEVVRKEIKYCFSDGIGKISEAAAEKVAEECGLLCHTPSAFQIRYAGFKGVVAID 601
            E IPD+EV      YCFSDGIGKIS A A++VA++CG L H PSAFQIRY G+KGV+A+D
Sbjct: 545  EQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCG-LSHVPSAFQIRYGGYKGVIAVD 604

Query: 602  PTSTKKLSLRDSMLKYMSLDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEE 661
             +S +KLSLRDSMLK+ S +  L+V  W++  PC+LNR++I LLSTLGI+D +F   Q  
Sbjct: 605  RSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAV 664

Query: 662  AIYQLDSILKDSSKALEVLELMSPGEMTNILKEMLLL-YNPHEEPFLNMMLRTFRADKLL 721
             +  L ++L+D   AL VL+ +S     N+L +MLL  Y P  EP+L+MMLR     +L 
Sbjct: 665  HLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLS 724

Query: 722  DLKNKSRIFVPKGRTMMGCLDETRTLEYGQVFAQCSVP------------GKASKSSFVV 781
            +LK++ RI VPKGR ++GC+DE   LEYGQV+ + ++              K  + + VV
Sbjct: 725  ELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVV 784

Query: 782  KGKVVVAKNPCLHPGDVRVFDAVDVKTLHH--MVDCVVFPQKGKRPHPNECSGSDLDGDL 841
             GKVVV KNPCLHPGD+RV DA+          +DC++FPQKG+RPHPNECSG DLDGD 
Sbjct: 785  IGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQ 844

Query: 842  YFVSWDPELTCIRTVKPMSYEPAPTIQLNHDVTIEEVQEYLANYMVNDGLGGIANAHTVF 901
            +FVSWD ++       PM Y  +    ++HDVT+EE+ ++  +YM++D LG I+ AH V 
Sbjct: 845  FFVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVH 904

Query: 902  ADKSPQKAMSSECIELAKLFSIAVDFPKTGVPANLPGSLRVKEYPDFMEKPHRPSYVSKG 961
            AD+ P+KA S +C+ELA L S AVDF KTG PA +P +L+ +E+PDF+E+  +P+Y+S+ 
Sbjct: 905  ADRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISES 964

Query: 962  VFGKLFRGVKDVSSNINIIETFTREVASKCYDPDMEVDGFQNYLGEAFDFKTRYDFKLGN 1021
            VFGKL+R VK   S++   +       +  YD  +E  GF++++  A   +  Y  KL +
Sbjct: 965  VFGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTS 1024

Query: 1022 LMGYYGIETEPELVGGNILRMGKSFDKRND------MEQISIAMKSLRKEARGWFNEKGS 1081
            LM YYG   E E++ G IL+  + +  R++       ++I++++K L KEA GWF +   
Sbjct: 1025 LMIYYGAANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK--- 1084

Query: 1082 KCAYDDDKDDNEGFAKASAWYYVTYHPNYWGLYNEGMQRDHFLSFPWCVSDKLLQIKRE 1093
             C     +D+ +    ASAWYYVTY+PN+        ++  FLSFPW V D LL IK E
Sbjct: 1085 SC-----EDEQQKKKLASAWYYVTYNPNHRD------EKLTFLSFPWIVGDVLLDIKAE 1116

[Close]
BLAST of Sed0009745 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 )

HSP 1 Score: 571.2 bits (1471), Expect = 1.8e-162
Identity = 400/1081 (37.00%), Postives = 570/1081 (52.73%), Query Frame = 0 

Query: 94   RRRNGVE-RMENVKGYFGNLVWEDKMRVIWKGENWGMEFGTE----DRKLSFHLSHGFD- 153
            RRR  V  ++  +    G LV  D   V W+ E  G++F  +      K  F  S  F  
Sbjct: 123  RRRTTVPYKLAGITLEIGTLVSRDDFFVSWRAE--GVDFLVDPFDNTCKFCFRKSTAFSF 182

Query: 154  -----------EYKMELPFENILGYQFYCPLDRSSKLFLIKVFAGSSKIFKKT---PLSS 213
                       +YK+EL   +I   + Y  L       LI   A S +++ +T    +  
Sbjct: 183  KDAVMHAVINCDYKLELLVRDIQTVRQYKTL---HGFVLILQLASSPRVWYRTADDDIYD 242

Query: 214  SSPNSKKSTGFPWIRDVDFTPSSSIGQSSALCLELQP------GDHLPSFFQTLVGFKQI 273
            + P        PWIR  DFT   +IG+  +  + + P         L  F    V  +++
Sbjct: 243  TVPGDLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERV 302

Query: 274  --CARLELQPGSSSSSPSDLVPIVQRLDIPFKILFKINSLVQHGYLPGPALDDEFFQLVD 333
                R+  +P            I  +  I F+I+F +NS++  G      L + FF L+ 
Sbjct: 303  RWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDLL- 362

Query: 334  PNRFRSDYIEYALEKLFNLKECCYEPHKWLKEKYLSLYSSKQLPWKPSVSVDDGLVYIHR 393
                  D    +L+ L   K   ++ +K LK     +  + +L      S D  +  I R
Sbjct: 363  -RNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSED--ISEIRR 422

Query: 394  VQITPSKVYFRGPEANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSSDL----AP---- 453
            + ITP++ Y   PE  LSNRV+RR+    + F+RV+F+DE +  I S+ L    AP    
Sbjct: 423  LVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKD 482

Query: 454  -RSADKSERTRVYDRIFSVLRNGIVIGEKKFEFLAFSASQLRDNSFWMFASREGLSASDI 513
              S+  S++T V+ R+ S+L +G  +  +K+ FLAFSA+QLRD S W FA       SDI
Sbjct: 483  LTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDI 542

Query: 514  RDWMGDFSNIRNVAKYAARLGQSFGSSRKTLCVEKSEIEI-IPDVEVVRKEIKYCFSDGI 573
            + WMG F + +NVAK AAR+G  F S+  T+ V   E++  +PD+E       Y FSDGI
Sbjct: 543  KTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGI 602

Query: 574  GKISEAAAEKVAEECGLLCH-TPSAFQIRYAGFKGVVAIDPTSTK--KLSLRDSMLKYMS 633
            G I+   A++V E+  L  H +P A+QIRYAGFKGVVA  P+ +   +L+LRDSM K+ S
Sbjct: 603  GTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFS 662

Query: 634  LDTQLDVLSWSKYHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEV 693
              T L++ SW+++ P +LNRQ+I LLS LG+ D +F   QE  +Y+L+ IL D+  A EV
Sbjct: 663  KHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEV 722

Query: 694  LELMSPGEMTNILKEMLLL-YNPHEEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMG 753
            L   S  E  N    ML   + P  EP L  ML + R  +L  L+ KSRIFV  GR +MG
Sbjct: 723  L-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMG 782

Query: 754  CLDETRTLEYGQVFAQCSVPG------------KASKSSF-VVKGKVVVAKNPCLHPGDV 813
            CLDE   LE+GQ F Q S P             K +K+   VVKG V +AKNPCLHPGDV
Sbjct: 783  CLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDV 842

Query: 814  RVFDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPEL--TCIRTVKP 873
            R+ +AVDV  LHHM DC++FPQKG RPH NE SGSDLDGDLYFV+WD +L     ++   
Sbjct: 843  RILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPA 902

Query: 874  MSYEPAPTIQLNHDVTIEEVQEYLANYMVNDGLGGIANAHTVFADKSPQKAMSSECIELA 933
            M Y+ A    L   V  +++ ++ A  + N+ LG I NAH V AD+S   AM  EC+ LA
Sbjct: 903  MHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLA 962

Query: 934  KLFSIAVDFPKTGVPANLPGSLRVKEYPDFMEKPHRPSYVSKGVFGKLFRGVKDV-SSNI 993
            +L + AVDFPKTG   ++P  L+ K YPDFM K    +Y S  + G+L+R VK+V   + 
Sbjct: 963  ELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDA 1022

Query: 994  NIIETFTREVASKCYDPDMEVDGFQNYLGEAFDFKTRYDFKLGNLMGYYGIETEPELVGG 1053
                  + + ++  YD  +E+ GF++ + EA+  K  YD +L  L+G Y ++ E E+V G
Sbjct: 1023 EASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTG 1082

Query: 1054 NILRMGKSFDKRND--MEQISIAMKSLRKEARGWFNEKGSKCAYDDDKDDNEGF-AKASA 1106
            +I  M K   K+     E++  +  SL+KE R  F E         +++ N  +  KASA
Sbjct: 1083 HIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASA 1142

[Close]
BLAST of Sed0009745 vs. TAIR 10
Match: AT2G19930.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 124.4 bits (311), Expect = 5.7e-28
Identity = 183/727 (25.17%), Postives = 300/727 (41.27%), Query Frame = 0 

Query: 329 YEPHKW--LKEKYLSLYSSKQLPWKPSVSVDDGLVYIHRVQITPSKVY-------FRGPE 388
           YE   W  L   Y      + L W      D G  + ++  + P+  Y        +GP 
Sbjct: 174 YEAAVWDRLGRHYCPQKDRRMLQW------DSGKTHYYQCNVAPNGSYTFKVLSALQGPL 233

Query: 389 ANLSNRVVRRFSDDIDSFIRVSFVDEELDKIRSSDLAPRSADKSERTRVYDRIFS---VL 448
              +   + +   D D+ + V F D                 KS  T   D  F+   + 
Sbjct: 234 LEHTGTHLHKVLGD-DNVLTVKFAD---------------VQKSSSTYSIDHYFTYKGIA 293

Query: 449 RNGIVIGEKKFEFLAF------------SASQLR-------DNSFWMFASREGLSASDIR 508
           +NGI+IG ++++F  F            S  +++         +F+   +   L+   I 
Sbjct: 294 KNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIY 353

Query: 509 DWMGDFSNIR---NVAKYAARLGQSFGSSRKTLCVEKSEI--EIIPDV--------EVVR 568
           +    F ++     +A Y AR      S  KTL V+ + I  + I D+        +V+ 
Sbjct: 354 EARMHFMHVHRAPTLANYMARFSLIL-SKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLD 413

Query: 569 KEIKYCF-SDGIGKISEAAA---------------EKVAEECGLLCHTPSAFQIRYAGF- 628
           K  K C  SDG G ISE  A               E + E C         F++ Y G+ 
Sbjct: 414 KNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYA 473

Query: 629 -KGVVAID-PTSTKKLSLRDSMLKY--------MSLDTQLDVLSWSK-YHPCYLNRQVIN 688
            KG   ++     + + +R SM+K          S    L+V++ S       L++ ++ 
Sbjct: 474 VKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVA 533

Query: 689 LLSTLGIQDHVFVKKQEEAIYQLDSILKDSSKALEVLELMSPGEMTN-ILKEMLLLYNPH 748
           LLS  GI +  F+      + +  SI  +   AL     ++ GEM +    +M+L+  P 
Sbjct: 534 LLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNA--ALNYGEMDDQNAAQMILVGIPL 593

Query: 749 EEPFLNMMLRTFRADKLLDLKNKSRIFVPKGRTMMGCLDETRTLEYGQVFAQCSVPGKAS 808
           +EP L   L      +  DLK   ++ V +   +MG +D T  L+  +V   C +     
Sbjct: 594 DEPHLKNYLSILLKTEKNDLK-AGKLPVTESYYLMGTVDPTGALKEDEV---CVI----- 653

Query: 809 KSSFVVKGKVVVAKNPCLHPGDVRVFDAVDVKTLHHMVD----CVVFPQKGKRPHPNECS 868
             S  + G+V+V +NP LH GD+ +  A  VK L   V      V FPQKG R   +E +
Sbjct: 654 LESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIA 713

Query: 869 GSDLDGDLYFVSWDPELTCIRTVKP----MSYEP--------APTIQLNHDVTIEEVQEY 928
           G D DGD+YF+S +PEL  +   KP    +S  P        AP+ QL+ +   EE+ E 
Sbjct: 714 GGDFDGDMYFISRNPEL--LENFKPSEPWVSLTPPSKSNSGRAPS-QLSPEELEEELFEM 773

Query: 929 L--ANYMVNDGLGGIANAHTVFA--------DKSPQKA-MSSECIELAKLFSIAVDFPKT 949
              A +  ++ +G  A++             D++ +KA M  + +EL  ++  A+D PK 
Sbjct: 774 FLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKK 833

[Close]
BLAST of Sed0009745 vs. TAIR 10
Match: AT2G19910.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 107.8 bits (268), Expect = 5.6e-23
Identity = 104/399 (26.07%), Postives = 175/399 (43.86%), Query Frame = 0 

Query: 585 DSMLKYMSLDTQLDVLSWSK-YHPCYLNRQVINLLSTLGIQDHVFVKKQEEAIYQLDSIL 644
           D  L  +S    L+V++ S       L+R ++ LLS  G+ +  F+      + +  +I 
Sbjct: 491 DRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIF 550

Query: 645 KDSSKALEVLELMSPGEMTNILKEMLLLYNPHEEPFLNMMLRTFRADKLLDLKNKSRIFV 704
                A +        + T    +M+L+  P +EP+L   L      +   LK   R  +
Sbjct: 551 YSERAAFKAAINYGDDQYT---ADMILVGIPLDEPYLKDRLSYLLKTERNALK-AGRFPI 610

Query: 705 PKGRTMMGCLDETRTLEYGQVFAQCSVPGKASKSSFVVKGKVVVAKNPCLHPGDVRVFDA 764
            +   +MG +D T  L+  ++   C +       S  + G V+V +NP LH GD+ V  A
Sbjct: 611 DESYYIMGTVDPTGELKENEI---CVI-----LHSGQISGDVLVYRNPGLHFGDIHVLKA 670

Query: 765 VDVKTLHHMVD----CVVFPQKGKRPHPNECSGSDLDGDLYFVSWDPELTCIRTVKP--- 824
             VK L   V      V FPQKG R   +E +G D DGD+YF+S +P+L  +   KP   
Sbjct: 671 TYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKL--LEHFKPSEP 730

Query: 825 --MSYEPAPTI--QLNHDVTIEEVQEYL------ANYMVNDGLG-------GIANAHTVF 884
              S +P+     +   +++ EE++E L      A +   D +G       GI +     
Sbjct: 731 WVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTL 790

Query: 885 ADKSPQK--AMSSECIELAKLFSIAVDFPKTGVPANLPGSLRVKEYPDFMEKPHRPSYVS 944
            D+S ++        ++L  ++  A+D PK G   +LP  L +K +P +ME+  +  + S
Sbjct: 791 GDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRS 850

Query: 945 KGVFGKLFRGVKDVSSNINIIETFTREVASKCYDPDMEV 957
             + G +F    D   + N  E    E++   Y  D  V
Sbjct: 851 TSILGLIF----DTVDSHNAEEPPPSEISKLWYFEDEPV 871

The following BLAST results are available for this feature:
BLAST of Sed0009745 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023524039.10.0e+0078.83probable RNA-dependent RNA polymerase 1 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023524048.10.0e+0078.34probable RNA-dependent RNA polymerase 1 isoform X2 [Cucurbita pepo subsp. pepo][more]
KAG7032582.10.0e+0078.31RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. argyrospe... [more]
XP_022923210.10.0e+0078.45probable RNA-dependent RNA polymerase 1 [Cucurbita moschata][more]
XP_022990904.10.0e+0078.73probable RNA-dependent RNA polymerase 1 [Cucurbita maxima][more]
BLAST of Sed0009745 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LQV20.0e+0055.35RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1[more]
Q0DXS32.6e-25961.44Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947... [more]
O825049.7e-21438.72RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1[more]
Q7XM316.5e-20240.44Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947... [more]
Q9SG022.5e-16137.00RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1[more]
BLAST of Sed0009745 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EB470.0e+0078.45RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111430971 PE=3 ... [more]
A0A6J1JTB10.0e+0078.73RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111487656 PE=3 SV... [more]
A0A6J1FF440.0e+0076.82RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444909 PE=3 ... [more]
A0A6J1K1Q30.0e+0076.48RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489826 PE=3 SV... [more]
A0A0A0KRH30.0e+0075.54RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=... [more]
BLAST of Sed0009745 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G14790.10.0e+0055.35RNA-dependent RNA polymerase 1 [more]
AT4G11130.16.9e-21538.72RNA-dependent RNA polymerase 2 [more]
AT3G49500.11.8e-16237.00RNA-dependent RNA polymerase 6 [more]
AT2G19930.15.7e-2825.17RNA-dependent RNA polymerase family protein [more]
AT2G19910.15.6e-2326.07RNA-dependent RNA polymerase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePFAMPF05183RdRPcoord: 368..928
e-value: 5.8E-183
score: 609.7
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePANTHERPTHR23079RNA-DEPENDENT RNA POLYMERASEcoord: 7..1112
NoneNo IPR availablePANTHERPTHR23079:SF38RNA-DEPENDENT RNA POLYMERASEcoord: 7..1112
NoneNo IPR availableCDDcd00590RRM_SFcoord: 17..70
e-value: 8.91395E-4
score: 36.8993

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009745.1Sed0009745.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0001172 transcription, RNA-templated
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003723 RNA binding
molecular_function GO:0003968 RNA-directed 5'-3' RNA polymerase activity