Sed0009708 (gene) Chayote v1

Overview


Name	Sed0009708
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Coatomer subunit zeta
Location	LG08: 38946013 .. 38950074 (+)
RNA-Seq Expression	Sed0009708
Synteny	Sed0009708

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAACGAGGTAGAAGTTTAATTATGAAAAAGTAAGGGCCTCAATTTATATTTCAGTTAACTTCGGGGACTGGCCGGAGTAGACGCGAAGTATTTGAACAGAGTCGTCTGTTTTCGATTTTCGTTCTCATTTACGCGAGAGAGATCCGGCGGCGTTCCAATTCCTGAAGAATTATTCACCGGAAAATTTTGTTCACAAACACATGGTCAGTTTCCTTCTTCATTTTGATCTAATCACATCTTCGTTTCATTTTTTTGTTGCGTAGACGTATGATTTTTGCTTTTAGATATGTATCGTAGTAACAATCTGTGAATTTTTGGGATGAAAATTGATGTTAGGATTACGGAGTTTTGTTCTAGTTAGACAATTATGTTCTACGATTTTGGAAGTAGATCTGACTTCTGAGCTGATTTTAACAATGTGTTTGTAGGCACAGATCGATCTATGAACTTGCTAAGTCGATTCGGATTTAGTTTTTGCGTGTATGGATCTGGTTAATTTCGTCGCAAGATTTGAATTGTCTGTGCATTACTTTCTTCGTATCCAGTTGATTTTAAACTAATCTCACATTATTAGTCTCAATATAATTTGGTGAAAATGTTTGAAGTAGTTGGGAAGATTTTGATTAATTTAGCGTAAGAAACATGTCCCCGAGGGGCAGCCCAATGGTTGAGGCTACGGACTCCAAAGTATGCTTCCTTGAGAGATCCCTATTTCGAGACTGTTGAGGAACGCTTAAACTAGAATACTGTCCGATGTATTCTGTTGTATTCTGGTGCCACAACTTAGAAACGGGCCAGTGGTGCCCCAATAGGAGAGCCAAGCTCCGATTTCTTGGTTTTCAGAATGCTTCACAGTCCTCAAATTCTGATGTAGCTTATTGCTAGTTTTTGGATTTTGCTTCGTGGATTAGGTTTTCATATTTCTCAGGCAATATAGTTATAGCAACAATTCTTTAGGAAAAATTCATCTGGTTTGTAACTGCATACAAAGGCTATTACCCCCCCTCAATCCTAACATGTTTGCTTTATTGTATGAAGGATTCTTGCCCCTCCATTAAAAACATTCTTCTTTTGGATTCTGATGGGAAGCGCGTAGCTGTCAAATATTATACAGATGACTGGCCTGCAAATGGTGCAAAGGAAGCTTTTGAAAAATCTGTTTTCACCAAAACTCAGAAAACAAATGCTCGCACAGAGGGTAGTTACTTTTTATTGCATTAGTTTTAACTGTTTTTTTTTTTGGAGATTTATCGCTAAACACGTGAGCTCTTCCTATATTTAACTCAATTTCAATGCCACTTTAATTGCAAATGTATGTGGGGTGTTTTTTATTAAGGGATCACGAGTTCAAATTGTTGCACCTCTAAATGTCGATGAAATTCAATAAAGAAGAAAGCTTCAGAATCTTTCTTTAGTCAAATTATTCAATGGTTTTATCATAATCATCTTTTTAATTGCATTTTGTTGACTACTAGTAGCATGGGTTAGAAATATGTCTACTTTGAAAGTTTATTTTGTTCTCTGCATTCTGTAAGAGCATCTACCAGTCTACGCCATTTTGTAAAGTACGGCAATTTGTTTTTTTATGCCTTATATTGTTGGCGAAGTTCTTCCCTACATTTTAACTTGATATTTACTTGTAACATGCAGCGGAGATAGCAATGTTCGAGAATAATATAGTGGTGTACAAGTTTGTTCAAGACCTCCACTTTTTTGTCACGGGTGGAGAAGACGAAAATGAGCTCACCTTAGCATCCGTTCTTCAGGGATTTTTTGATGCTGTGGGCCTTCTTCTTAGGTTTGACACTTTTTTATCCTTCTGCACTGGCCCAATACTATTGTTCTTGAACATAGTGTTCTTAGTTCTTTGTTCTTGTACTACAGGGGTAATGTCGAAAAGAAAGAGGCACTTGAGAACTTGGACCTCATTTTACTATGTCTTGATGAAATTATTGACGGAGGGTATGTCTCATATGCTTCTTTCCTTATTACATTTATTCTGTGTTTTTCAATTGTGTTACTTGTTTAATTTCTTGTTTTGTTCAGTCTTTTATATTTTGATTGTGTTATTTTTTTTATTTACTAATCATTTTAAATCGACAGCCATGCAGATTCTTGTTAGACTAATTATGCACGGAAAATTGAAGTATGAACTGTTAAGATAATTATGTCAGAAGAATCTAAGGTAGTAATATTAAAGAAGTAATAGTTTCATAAATATACATGGAAGCAATTTGTTGATGAATGAGGAATATGCTCAGTTAAAAAAAAAAAGGAATATGCTTTCATTATAGTTGCAAAACTGCTATAAATAGTCTAAACGATTGTTACATGTTGAAGTACTGGTTAATTTTGACTTGGTGGATTGTTGCTGGATAAGGGATCTGGCTCTCACGTCTTTATTTTGATTATATCACTAGGTAATTTCTTACATGAGTTGATGGTGAACTTTTTTTTATTATAATAATAATGCTAGTGGAAATGATGTTATGTAATGTAACACGTAGTATAAATCCCAAGAAACCAGAAATTTTGGAATTTGAATGGTATAAATGTGTATGTTTATACTTGATTCGTTGAAAGTTAAAGTTTGTGGCTGAACTAGCGATTGTTGTTTGAGTAGTTTTAAGTAGTCTATGTTCGACTCAACTAGTCTTATTTTTTGGAGAACCAAAAGTTATTGTGTAGTGTAAGTCAGGTGGGAGTATTGGACCATTAGTAACCATCAAGGGTTGGTCTAGTGGTCAAGAGGCATTTGATGAACAAGTAGGCAGAAGCGATGGGTTCAATAGCCACTTACAATTTAATTTCCTACCAATTTTCTTGATAACCAAATGTAGTAAGGCCAGACAATTGTTTCGTGAATTTAGTCAAAGTGCTCATTAGGTGGCCCTATCCTCATCGATATTAAAAAAAAAATCTTAAGCGTTGGAAATTGGAACCAACTTAGCTGACCAAACGGCTCTTCTTTTGTAGGTTATAGCCTGATAGTTTCCCGTCATTTATAAATGTAGCAGATCATGAATTACGCAAAACTTTCTTTCTGTTTTAGTAGCACTCATGCCCCATTGTCCCTTGCAAAATTAATACAGTAACATCCACGTTATTATATAGCTGATTGAAGCTGGAGCTGAGCATCTAGACTAAATCATCTTGGGTTATAGCTATCCATATCCTTTGCGGGAACAGAGTTGGATCCAATTACCAACAAGAGCATAGCTTTAGTGGCATGATGTATAATCTAGTAACCAAGAGGTTACGAGCCCAATTCATTTGAAAACATGATAACTTTGACACCAGATGCCTGTCTTGGGTCAAAGTTGAACAGATAAACTTTACCAAGGGTTGTTTTACTCATGAGATAATAAACTTACCAATAGTAGGTTAAGAAAGTGATCCATAGAGAGTTTTGTTAACCATTCGTGTGCGTATTTTTCAGCATTATTCTCGAGACGGATGCAAACGTCATTGCTGGGAAGGTCGCAAGTCACAGTATTGACAGTGGTGCTCCTTTGTCTGAGCAGGTACAATATTTCAGTTCCATTTTCTTTTCCCTTTTCTCTCTTTTACTTTCCAGTTATCATCTTGAAAGGGGTTTTCTTTTCTCTTTTTCTTGCAGACAATAAGTCAAGCATTGGCCACAGCTCGGGAACATCTAGCAAGATCACTTCTTAAATAATATGTTTCCTGATAAAAGTGAGTGGCTAGGACAATCCCCACCCCCACCCCCACCAAACTTAGTATTACTCTTGCCCAAACACGCTGAATTACCAAGTTTTGATGCATATGATCGCACCCAAGAATCCGATCGAGTTAACTTGGTGTTTTGGTTAAAGATATTATTAATGTTGAATTATCAATAACCTCACTCAAGCTCTGCCTTATGTCTGTTATTTGAACAGATGTTTGTGCAGTGTGGGACTGGAGTTAAATGTCATTATATGTCGAGTTATCAGATTTTCTGAAACTATGTTTTCTTTTTTAGACTTATGGGTTATGTTGTTCTTGGCTAAATGAACTTCAAACAGGTTTTTTAATTTTGTATTCATAGAATGGCT

mRNA sequence

AAAAAAACGAGGTAGAAGTTTAATTATGAAAAAGTAAGGGCCTCAATTTATATTTCAGTTAACTTCGGGGACTGGCCGGAGTAGACGCGAAGTATTTGAACAGAGTCGTCTGTTTTCGATTTTCGTTCTCATTTACGCGAGAGAGATCCGGCGGCGTTCCAATTCCTGAAGAATTATTCACCGGAAAATTTTGTTCACAAACACATGGATTCTTGCCCCTCCATTAAAAACATTCTTCTTTTGGATTCTGATGGGAAGCGCGTAGCTGTCAAATATTATACAGATGACTGGCCTGCAAATGGTGCAAAGGAAGCTTTTGAAAAATCTGTTTTCACCAAAACTCAGAAAACAAATGCTCGCACAGAGGCGGAGATAGCAATGTTCGAGAATAATATAGTGGTGTACAAGTTTGTTCAAGACCTCCACTTTTTTGTCACGGGTGGAGAAGACGAAAATGAGCTCACCTTAGCATCCGTTCTTCAGGGATTTTTTGATGCTGTGGGCCTTCTTCTTAGGGGTAATGTCGAAAAGAAAGAGGCACTTGAGAACTTGGACCTCATTTTACTATGTCTTGATGAAATTATTGACGGAGGCATTATTCTCGAGACGGATGCAAACGTCATTGCTGGGAAGGTCGCAAGTCACAGTATTGACAGTGGTGCTCCTTTGTCTGAGCAGACAATAAGTCAAGCATTGGCCACAGCTCGGGAACATCTAGCAAGATCACTTCTTAAATAATATGTTTCCTGATAAAAGTGAGTGGCTAGGACAATCCCCACCCCCACCCCCACCAAACTTAGTATTACTCTTGCCCAAACACGCTGAATTACCAAGTTTTGATGCATATGATCGCACCCAAGAATCCGATCGAGTTAACTTGGTGTTTTGGTTAAAGATATTATTAATGTTGAATTATCAATAACCTCACTCAAGCTCTGCCTTATGTCTGTTATTTGAACAGATGTTTGTGCAGTGTGGGACTGGAGTTAAATGTCATTATATGTCGAGTTATCAGATTTTCTGAAACTATGTTTTCTTTTTTAGACTTATGGGTTATGTTGTTCTTGGCTAAATGAACTTCAAACAGGTTTTTTAATTTTGTATTCATAGAATGGCT

Coding sequence (CDS)

ATGGATTCTTGCCCCTCCATTAAAAACATTCTTCTTTTGGATTCTGATGGGAAGCGCGTAGCTGTCAAATATTATACAGATGACTGGCCTGCAAATGGTGCAAAGGAAGCTTTTGAAAAATCTGTTTTCACCAAAACTCAGAAAACAAATGCTCGCACAGAGGCGGAGATAGCAATGTTCGAGAATAATATAGTGGTGTACAAGTTTGTTCAAGACCTCCACTTTTTTGTCACGGGTGGAGAAGACGAAAATGAGCTCACCTTAGCATCCGTTCTTCAGGGATTTTTTGATGCTGTGGGCCTTCTTCTTAGGGGTAATGTCGAAAAGAAAGAGGCACTTGAGAACTTGGACCTCATTTTACTATGTCTTGATGAAATTATTGACGGAGGCATTATTCTCGAGACGGATGCAAACGTCATTGCTGGGAAGGTCGCAAGTCACAGTATTGACAGTGGTGCTCCTTTGTCTGAGCAGACAATAAGTCAAGCATTGGCCACAGCTCGGGAACATCTAGCAAGATCACTTCTTAAATAA

Protein sequence

MDSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMFENNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLILLCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK

Homology

[Close]

BLAST of Sed0009708 vs. NCBI nr
Match: XP_023542943.1 (coatomer subunit zeta-1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 331.3 bits (848), Expect = 5.3e-87
Identity = 170/177 (96.05%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDS+GKRVAVKYY+DDWP N AKEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENNIVVYKFVQDLHFFVTGGEDENEL LASVLQGFFDAVGLLLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0009708 vs. NCBI nr
Match: XP_022954697.1 (coatomer subunit zeta-2-like isoform X2 [Cucurbita moschata] >XP_022994906.1 coatomer subunit zeta-2-like isoform X2 [Cucurbita maxima] >KAG6573351.1 Coatomer subunit zeta-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012515.1 Coatomer subunit zeta-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329.7 bits (844), Expect = 1.5e-86
Identity = 169/177 (95.48%), Postives = 173/177 (97.74%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDS+GKRVAVKYY+DDWP N  KEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENNIVVYKFVQDLHFFVTGGEDENEL LASVLQGFFDAVGLLLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0009708 vs. NCBI nr
Match: XP_022139792.1 (coatomer subunit zeta-1-like [Momordica charantia])

HSP 1 Score: 329.3 bits (843), Expect = 2.0e-86
Identity = 168/177 (94.92%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDS+GKRVAVKYY+DDWP N AKEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENNIVVYKFVQDLHFFVTGGEDENEL LASVLQGFFDAVG+LLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSID+GAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDTGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0009708 vs. NCBI nr
Match: XP_023542942.1 (coatomer subunit zeta-2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 329.3 bits (843), Expect = 2.0e-86
Identity = 169/176 (96.02%), Postives = 173/176 (98.30%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           +SCPSIKNILLLDS+GKRVAVKYY+DDWP N AKEAFEK+VFTKTQKTNARTEAEIAMFE
Sbjct: 3   ESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMFE 62

Query: 62  NNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           NNIVVYKFVQDLHFFVTGGEDENEL LASVLQGFFDAVGLLLRGNVEKKEALENLDLILL
Sbjct: 63  NNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 122

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 123 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178

[Close]

BLAST of Sed0009708 vs. NCBI nr
Match: XP_022954696.1 (coatomer subunit zeta-2-like isoform X1 [Cucurbita moschata] >XP_022994905.1 coatomer subunit zeta-2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 327.8 bits (839), Expect = 5.8e-86
Identity = 168/176 (95.45%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           +SCPSIKNILLLDS+GKRVAVKYY+DDWP N  KEAFEK+VFTKTQKTNARTEAEIAMFE
Sbjct: 3   ESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMFE 62

Query: 62  NNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           NNIVVYKFVQDLHFFVTGGEDENEL LASVLQGFFDAVGLLLRGNVEKKEALENLDLILL
Sbjct: 63  NNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 122

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 123 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178

[Close]

BLAST of Sed0009708 vs. ExPASy Swiss-Prot
Match: Q6Z844 (Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.4e-74
Identity = 139/176 (78.98%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           +SCPS+KNILLLDS+GKRVAVKY++DDW +N +K AFEKSVFTKT KTNAR+EAEI +F+
Sbjct: 7   ESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFD 66

Query: 62  NNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
             IVVYKFVQDLHFFVT G+DENEL +A+VLQGF D+VGLLLRG+VEK+ ALENLDLILL
Sbjct: 67  GYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILL 126

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           C+DEI+DGGIILETDAN IAGKVA++++D  AP SEQTISQALATAREHLARSLLK
Sbjct: 127 CIDEIVDGGIILETDANTIAGKVATNAVDGSAPFSEQTISQALATAREHLARSLLK 182

[Close]

BLAST of Sed0009708 vs. ExPASy Swiss-Prot
Match: Q940S5 (Coatomer subunit zeta-1 OS=Arabidopsis thaliana OX=3702 GN=At1g60970 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.6e-73
Identity = 140/177 (79.10%), Postives = 154/177 (87.01%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+  P +KNILLLDS+GKRVAVKYY+DDWP N A+EAFEKSVFTKTQKTNARTE E+   
Sbjct: 1   MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query: 61  ENNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENNIVVYKFVQDLHFFVTGGE+ENEL LASVL+G FDAV LLLR NV+K+EAL+NLDLI 
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           L  DEIIDGGI+LETDANVIAGK   +S D  APLSEQTISQALATAREHL RSL+K
Sbjct: 121 LSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177

[Close]

BLAST of Sed0009708 vs. ExPASy Swiss-Prot
Match: Q84LG4 (Coatomer subunit zeta-2 OS=Arabidopsis thaliana OX=3702 GN=At3g09800 PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 8.5e-72
Identity = 135/175 (77.14%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           DSCP +KNILLLDS+GKRVAVKYY+DDWP N AK +FEK VF+KT KTNARTEAEI + +
Sbjct: 4   DSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63

Query: 62  NNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           +NI+VYKF QDLHFFVTGGE+ENEL LASVLQGFFDAV LLLR NVEK EALENLDLI L
Sbjct: 64  SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFL 123

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G++LETD NVIAGKVA  S ++   LSEQT++QALATAREHLARSLL
Sbjct: 124 CLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178

[Close]

BLAST of Sed0009708 vs. ExPASy Swiss-Prot
Match: Q8H1F4 (Coatomer subunit zeta-3 OS=Arabidopsis thaliana OX=3702 GN=At4g08520 PE=2 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.9e-71
Identity = 136/175 (77.71%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           DSCP +KNILLLDS+GKRVAVKYY+DDW  N +K AFEK VF+KT KTNARTEAEI + E
Sbjct: 6   DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query: 62  NNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           +NIVVYKF QDLHFFVTGGE+ENEL L+SVLQGFFDAV LLLR NVEK EALENLDLI L
Sbjct: 66  SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 125

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G++LETDANVIAGKVA  S ++   LSEQT++QALATAREHLARSLL
Sbjct: 126 CLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180

[Close]

BLAST of Sed0009708 vs. ExPASy Swiss-Prot
Match: Q9MAX5 (Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.1e-68
Identity = 130/176 (73.86%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPS+KNILLLDS+GKRVAVKYYTDDWP   AK AFEKSVF KTQK  A  EAEI MF
Sbjct: 1   MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMF 60

Query: 61  ENNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           + +IVVYKF+QDLHFFVTGGE+ENEL LASVLQGF DAV ++LR NV+K+ ALENLDLIL
Sbjct: 61  DGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLL 177
           LCLDEI+DGGI+LET+ +VIA KV++H I+    L+EQTI QAL TAREHL +SLL
Sbjct: 121 LCLDEIVDGGIVLETEGSVIAEKVSAHGIEGATSLAEQTIVQALTTAREHLTKSLL 176

[Close]

BLAST of Sed0009708 vs. ExPASy TrEMBL
Match: A0A6J1K0K6 (Coatomer subunit zeta OS=Cucurbita maxima OX=3661 GN=LOC111490490 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.4e-87
Identity = 169/177 (95.48%), Postives = 173/177 (97.74%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDS+GKRVAVKYY+DDWP N  KEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENNIVVYKFVQDLHFFVTGGEDENEL LASVLQGFFDAVGLLLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0009708 vs. ExPASy TrEMBL
Match: A0A6J1GRN0 (Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111456877 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.4e-87
Identity = 169/177 (95.48%), Postives = 173/177 (97.74%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDS+GKRVAVKYY+DDWP N  KEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENNIVVYKFVQDLHFFVTGGEDENEL LASVLQGFFDAVGLLLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0009708 vs. ExPASy TrEMBL
Match: A0A6J1CEY0 (Coatomer subunit zeta OS=Momordica charantia OX=3673 GN=LOC111010622 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 9.7e-87
Identity = 168/177 (94.92%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDS+GKRVAVKYY+DDWP N AKEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENNIVVYKFVQDLHFFVTGGEDENEL LASVLQGFFDAVG+LLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSID+GAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDTGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0009708 vs. ExPASy TrEMBL
Match: A0A6J1K2M3 (Coatomer subunit zeta OS=Cucurbita maxima OX=3661 GN=LOC111490490 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.8e-86
Identity = 168/176 (95.45%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           +SCPSIKNILLLDS+GKRVAVKYY+DDWP N  KEAFEK+VFTKTQKTNARTEAEIAMFE
Sbjct: 3   ESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMFE 62

Query: 62  NNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           NNIVVYKFVQDLHFFVTGGEDENEL LASVLQGFFDAVGLLLRGNVEKKEALENLDLILL
Sbjct: 63  NNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 122

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 123 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178

[Close]

BLAST of Sed0009708 vs. ExPASy TrEMBL
Match: A0A6J1GRL4 (Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111456877 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 2.8e-86
Identity = 168/176 (95.45%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           +SCPSIKNILLLDS+GKRVAVKYY+DDWP N  KEAFEK+VFTKTQKTNARTEAEIAMFE
Sbjct: 3   ESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMFE 62

Query: 62  NNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           NNIVVYKFVQDLHFFVTGGEDENEL LASVLQGFFDAVGLLLRGNVEKKEALENLDLILL
Sbjct: 63  NNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 122

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 123 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178

[Close]

BLAST of Sed0009708 vs. TAIR 10
Match: AT1G60970.1 (SNARE-like superfamily protein )

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-74
Identity = 140/177 (79.10%), Postives = 154/177 (87.01%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+  P +KNILLLDS+GKRVAVKYY+DDWP N A+EAFEKSVFTKTQKTNARTE E+   
Sbjct: 1   MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query: 61  ENNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENNIVVYKFVQDLHFFVTGGE+ENEL LASVL+G FDAV LLLR NV+K+EAL+NLDLI 
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           L  DEIIDGGI+LETDANVIAGK   +S D  APLSEQTISQALATAREHL RSL+K
Sbjct: 121 LSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177

[Close]

BLAST of Sed0009708 vs. TAIR 10
Match: AT4G08520.1 (SNARE-like superfamily protein )

HSP 1 Score: 270.0 bits (689), Expect = 1.3e-72
Identity = 136/175 (77.71%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           DSCP +KNILLLDS+GKRVAVKYY+DDW  N +K AFEK VF+KT KTNARTEAEI + E
Sbjct: 6   DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query: 62  NNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           +NIVVYKF QDLHFFVTGGE+ENEL L+SVLQGFFDAV LLLR NVEK EALENLDLI L
Sbjct: 66  SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 125

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G++LETDANVIAGKVA  S ++   LSEQT++QALATAREHLARSLL
Sbjct: 126 CLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180

[Close]

BLAST of Sed0009708 vs. TAIR 10
Match: AT3G09800.1 (SNARE-like superfamily protein )

HSP 1 Score: 268.9 bits (686), Expect = 3.0e-72
Identity = 134/175 (76.57%), Postives = 152/175 (86.86%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSDGKRVAVKYYTDDWPANGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           DSCP +K ILLLDS+GKRVAVKYY+DDWP N AK +FEK VF+KT KTNARTEAEI + +
Sbjct: 4   DSCPLVKKILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63

Query: 62  NNIVVYKFVQDLHFFVTGGEDENELTLASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           +NI+VYKF QDLHFFVTGGE+ENEL LASVLQGFFDAV LLLR NVEK EALENLDLI L
Sbjct: 64  SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFL 123

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G++LETD NVIAGKVA  S ++   LSEQT++QALATAREHLARSLL
Sbjct: 124 CLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178

The following BLAST results are available for this feature:

BLAST of Sed0009708 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542943.1	5.3e-87	96.05	coatomer subunit zeta-1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022954697.1	1.5e-86	95.48	coatomer subunit zeta-2-like isoform X2 [Cucurbita moschata] >XP_022994906.1 coa...	[more]
XP_022139792.1	2.0e-86	94.92	coatomer subunit zeta-1-like [Momordica charantia]	[more]
XP_023542942.1	2.0e-86	96.02	coatomer subunit zeta-2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022954696.1	5.8e-86	95.45	coatomer subunit zeta-2-like isoform X1 [Cucurbita moschata] >XP_022994905.1 coa...	[more]

BLAST of Sed0009708 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6Z844	2.4e-74	78.98	Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ2 PE=2 S...	[more]
Q940S5	2.6e-73	79.10	Coatomer subunit zeta-1 OS=Arabidopsis thaliana OX=3702 GN=At1g60970 PE=2 SV=1	[more]
Q84LG4	8.5e-72	77.14	Coatomer subunit zeta-2 OS=Arabidopsis thaliana OX=3702 GN=At3g09800 PE=2 SV=1	[more]
Q8H1F4	1.9e-71	77.71	Coatomer subunit zeta-3 OS=Arabidopsis thaliana OX=3702 GN=At4g08520 PE=2 SV=1	[more]
Q9MAX5	1.1e-68	73.86	Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ1 PE=2 S...	[more]

BLAST of Sed0009708 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K0K6	7.4e-87	95.48	Coatomer subunit zeta OS=Cucurbita maxima OX=3661 GN=LOC111490490 PE=3 SV=1	[more]
A0A6J1GRN0	7.4e-87	95.48	Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111456877 PE=3 SV=1	[more]
A0A6J1CEY0	9.7e-87	94.92	Coatomer subunit zeta OS=Momordica charantia OX=3673 GN=LOC111010622 PE=3 SV=1	[more]
A0A6J1K2M3	2.8e-86	95.45	Coatomer subunit zeta OS=Cucurbita maxima OX=3661 GN=LOC111490490 PE=3 SV=1	[more]
A0A6J1GRL4	2.8e-86	95.45	Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111456877 PE=3 SV=1	[more]

BLAST of Sed0009708 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60970.1	1.9e-74	79.10	SNARE-like superfamily protein	[more]
AT4G08520.1	1.3e-72	77.71	SNARE-like superfamily protein	[more]
AT3G09800.1	3.0e-72	76.57	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.60		coord: 2..134 e-value: 2.5E-37 score: 130.0
None	No IPR available	PANTHER	PTHR11043:SF22	COATOMER SUBUNIT ZETA-2-LIKE	coord: 2..130
None	No IPR available	CDD	cd14829	Zeta-COP	coord: 8..130 e-value: 3.32473E-64 score: 190.064
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 7..131 e-value: 4.2E-19 score: 68.9
IPR039652	Coatomer subunit zeta	PANTHER	PTHR11043	ZETA-COAT PROTEIN	coord: 2..130
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 7..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009708.1	Sed0009708.1	mRNA
Sed0009708.2	Sed0009708.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0030126	COPI vesicle coat
cellular_component	GO:0000139	Golgi membrane