Sed0009685 (gene) Chayote v1

Overview
NameSed0009685
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG04: 46764778 .. 46765173 (+)
RNA-Seq ExpressionSed0009685
SyntenySed0009685
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGACGGGAAGCAGATATCGTCACCGAACGGAGTTTTCCGGCGACTTTTCAGAGCACGGTGCCGGAAAAATGCGAGGACCAATAATCTATTGGAAGCCATTGCCAAATCAAGCGGAGATGGAACTGCTTCTGTTTCTCAGATCGAAGAAAACGGAGTCGTAAGGATCAAGATGGTGGTGAAGAAGGCGGATTTGGCTCAATTTCTGGAATCCATGGGCGGCGGAAGCGGCGGCCGCAGAGTTTCTCCGGCGTCGATCTCCGCCGAACAACGGCTGGCGCTTGTTAGACGAAAGCAAATTCTCCGAGCCAAACTTGCGGCTGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATGAAGAAAACGATCGGCTTCGTAACTAA

mRNA sequence

ATGATCGACGGGAAGCAGATATCGTCACCGAACGGAGTTTTCCGGCGACTTTTCAGAGCACGGTGCCGGAAAAATGCGAGGACCAATAATCTATTGGAAGCCATTGCCAAATCAAGCGGAGATGGAACTGCTTCTGTTTCTCAGATCGAAGAAAACGGAGTCGTAAGGATCAAGATGGTGGTGAAGAAGGCGGATTTGGCTCAATTTCTGGAATCCATGGGCGGCGGAAGCGGCGGCCGCAGAGTTTCTCCGGCGTCGATCTCCGCCGAACAACGGCTGGCGCTTGTTAGACGAAAGCAAATTCTCCGAGCCAAACTTGCGGCTGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATGAAGAAAACGATCGGCTTCGTAACTAA

Coding sequence (CDS)

ATGATCGACGGGAAGCAGATATCGTCACCGAACGGAGTTTTCCGGCGACTTTTCAGAGCACGGTGCCGGAAAAATGCGAGGACCAATAATCTATTGGAAGCCATTGCCAAATCAAGCGGAGATGGAACTGCTTCTGTTTCTCAGATCGAAGAAAACGGAGTCGTAAGGATCAAGATGGTGGTGAAGAAGGCGGATTTGGCTCAATTTCTGGAATCCATGGGCGGCGGAAGCGGCGGCCGCAGAGTTTCTCCGGCGTCGATCTCCGCCGAACAACGGCTGGCGCTTGTTAGACGAAAGCAAATTCTCCGAGCCAAACTTGCGGCTGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATGAAGAAAACGATCGGCTTCGTAACTAA

Protein sequence

MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMVVKKADLAQFLESMGGGSGGRRVSPASISAEQRLALVRRKQILRAKLAAATWSPALQSIPEEIDEENDRLRN
Homology
BLAST of Sed0009685 vs. NCBI nr
Match: XP_023511743.1 (uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 3.8e-42
Identity = 96/123 (78.05%), Postives = 106/123 (86.18%), Query Frame = 0

Query: 1   MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
           MIDGKQ +SPNG FRRLFRAR RKNA+ +NLLEAIAK S +GT  VSQ EE+GVVRIKMV
Sbjct: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60

Query: 61  VKKADLAQFLESMGGGSGGRRVSPASISAEQRLALVRRKQILRAKLAAATWSPALQSIPE 120
           VKK DLAQ LE+M GG GG  V+PAS+S EQRLA++RRKQ LRAKLAAATWSPALQSIPE
Sbjct: 61  VKKTDLAQVLEAMAGGGGGGGVAPASVSVEQRLAIMRRKQFLRAKLAAATWSPALQSIPE 120

Query: 121 EID 124
           EID
Sbjct: 121 EID 123

BLAST of Sed0009685 vs. NCBI nr
Match: KAA0025124.1 (hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK19366.1 hypothetical protein E5676_scaffold3037G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 4.2e-41
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 0

Query: 1   MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
           MI+GKQ+ SPNG FRRLFRARCRK+A+ N LLEAIAK+S +GT  VS  EENGVVRIKMV
Sbjct: 1   MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60

Query: 61  VKKADLAQFLESMGG----GSGGRRVSPASISAEQRLALVRRKQILRAKLAAATWSPALQ 120
           VKK DLAQ LE+MGG    G GG  V+ AS+S EQRLA+VRRKQ+LRAKLAAATWSPALQ
Sbjct: 61  VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120

Query: 121 SIPEEID 124
           SIPEEID
Sbjct: 121 SIPEEID 127

BLAST of Sed0009685 vs. NCBI nr
Match: KGN43274.1 (hypothetical protein Csa_020212 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 2.7e-40
Identity = 92/124 (74.19%), Postives = 104/124 (83.87%), Query Frame = 0

Query: 1   MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
           MI+GKQ++SPNG FRRLFRARCRK+A+ N LLEAIAK+S +G   VS  EENGVVRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VKKADLAQFLESMGGGSGGRR-VSPASISAEQRLALVRRKQILRAKLAAATWSPALQSIP 120
           VKK DL Q LE+MGGG GG   V+PAS+S E RL ++RRKQ LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 EEID 124
           EEID
Sbjct: 121 EEID 124

BLAST of Sed0009685 vs. NCBI nr
Match: KAG6572129.1 (hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.9 bits (442), Expect = 4.7e-40
Identity = 93/124 (75.00%), Postives = 104/124 (83.87%), Query Frame = 0

Query: 1   MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
           MIDGKQ +SPNG FRRLFRAR RKNA+ +NLLEAIAK S +GT  VSQ EE+GVVRIKMV
Sbjct: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60

Query: 61  VKKADLAQFLESMGGGSGGRRVSPASISAEQRLALVRRKQILRAKLAAATWSPALQSIPE 120
           VKK DLAQ LE++ GG GG  V+PAS+S E RLA++RRKQ LRAKLAAATWSPALQSIPE
Sbjct: 61  VKKTDLAQVLEALAGGGGGGGVAPASVSVEHRLAIMRRKQFLRAKLAAATWSPALQSIPE 120

Query: 121 EIDE 125
             DE
Sbjct: 121 IEDE 124

BLAST of Sed0009685 vs. NCBI nr
Match: PON89926.1 (hypothetical protein TorRG33x02_142120 [Trema orientale])

HSP 1 Score: 90.9 bits (224), Expect = 8.9e-15
Identity = 65/120 (54.17%), Postives = 81/120 (67.50%), Query Frame = 0

Query: 16  RLFRARCRK---NARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMVVKKADLAQFLES 75
           RL RAR  +   N R+N LL+AIAKS+G     VSQ EE+GVVR+K+VV+K DL Q LE 
Sbjct: 23  RLHRARNHQKNINTRSNLLLDAIAKSNG----VVSQTEEDGVVRMKIVVRKQDLKQMLEV 82

Query: 76  MGG---GSGGRRVS--PASISAEQRLALVRRKQIL-RAKLA----AATWSPALQSIPEEI 123
           MGG   G+G    S    S SAEQRL+L+R+K +L RA LA     ++WSP LQSIPEE+
Sbjct: 83  MGGNKQGNGSNNPSSFSPSFSAEQRLSLLRKKHVLMRANLAKQSRRSSWSPVLQSIPEEL 138

BLAST of Sed0009685 vs. ExPASy TrEMBL
Match: A0A5A7SHL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00200 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 0

Query: 1   MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
           MI+GKQ+ SPNG FRRLFRARCRK+A+ N LLEAIAK+S +GT  VS  EENGVVRIKMV
Sbjct: 1   MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60

Query: 61  VKKADLAQFLESMGG----GSGGRRVSPASISAEQRLALVRRKQILRAKLAAATWSPALQ 120
           VKK DLAQ LE+MGG    G GG  V+ AS+S EQRLA+VRRKQ+LRAKLAAATWSPALQ
Sbjct: 61  VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120

Query: 121 SIPEEID 124
           SIPEEID
Sbjct: 121 SIPEEID 127

BLAST of Sed0009685 vs. ExPASy TrEMBL
Match: A0A0A0K2L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.3e-40
Identity = 92/124 (74.19%), Postives = 104/124 (83.87%), Query Frame = 0

Query: 1   MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
           MI+GKQ++SPNG FRRLFRARCRK+A+ N LLEAIAK+S +G   VS  EENGVVRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VKKADLAQFLESMGGGSGGRR-VSPASISAEQRLALVRRKQILRAKLAAATWSPALQSIP 120
           VKK DL Q LE+MGGG GG   V+PAS+S E RL ++RRKQ LRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

Query: 121 EEID 124
           EEID
Sbjct: 121 EEID 124

BLAST of Sed0009685 vs. ExPASy TrEMBL
Match: A0A7N2N056 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.5e-17
Identity = 62/124 (50.00%), Postives = 90/124 (72.58%), Query Frame = 0

Query: 9   SPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMVVKKADLAQ 68
           +P  VFR+ FRA+ +KN+R +++LE +   +G G   VS IE++GVVR+K+VVKK DL Q
Sbjct: 10  TPKRVFRQ-FRAQNQKNSR-SDMLETVVNVNGGGV--VSCIEKDGVVRMKIVVKKQDLTQ 69

Query: 69  FLESMGGGSGGR---RVSPA---SISAEQRLALVRRKQILRA----KLAAATWSPALQSI 123
            LE MGGG GG+    + P+   S+SAEQRL L+++K +LRA    + ++++WSPALQSI
Sbjct: 70  MLEVMGGGGGGKSKAHLQPSIMPSLSAEQRLNLLQKKHVLRANTTKESSSSSWSPALQSI 129

BLAST of Sed0009685 vs. ExPASy TrEMBL
Match: A0A2N9HB17 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39448 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 60/122 (49.18%), Postives = 82/122 (67.21%), Query Frame = 0

Query: 10  PNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMVVKKADLAQF 69
           P  VF+ + RAR  KN+RT N+LE +   +G G   VS  EE+GVVR+K++VKK DL Q 
Sbjct: 11  PKQVFQHV-RARNHKNSRT-NILENVVNVNGGGV--VSCYEEDGVVRMKIIVKKQDLTQM 70

Query: 70  LESMGGGSGGR-----RVSPASISAEQRLALVRRKQILRAKLA----AATWSPALQSIPE 123
           LE MGGG   +      ++P S+SAEQRL L+++K +LRA       +++WSPALQSIPE
Sbjct: 71  LEVMGGGGKNKAHHQPSITP-SLSAEQRLNLLQKKHLLRANTTKESWSSSWSPALQSIPE 127

BLAST of Sed0009685 vs. ExPASy TrEMBL
Match: A0A2P5EWK1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_142120 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 65/120 (54.17%), Postives = 81/120 (67.50%), Query Frame = 0

Query: 16  RLFRARCRK---NARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMVVKKADLAQFLES 75
           RL RAR  +   N R+N LL+AIAKS+G     VSQ EE+GVVR+K+VV+K DL Q LE 
Sbjct: 23  RLHRARNHQKNINTRSNLLLDAIAKSNG----VVSQTEEDGVVRMKIVVRKQDLKQMLEV 82

Query: 76  MGG---GSGGRRVS--PASISAEQRLALVRRKQIL-RAKLA----AATWSPALQSIPEEI 123
           MGG   G+G    S    S SAEQRL+L+R+K +L RA LA     ++WSP LQSIPEE+
Sbjct: 83  MGGNKQGNGSNNPSSFSPSFSAEQRLSLLRKKHVLMRANLAKQSRRSSWSPVLQSIPEEL 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023511743.13.8e-4278.05uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo][more]
KAA0025124.14.2e-4175.59hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK1936... [more]
KGN43274.12.7e-4074.19hypothetical protein Csa_020212 [Cucumis sativus][more]
KAG6572129.14.7e-4075.00hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON89926.18.9e-1554.17hypothetical protein TorRG33x02_142120 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SHL72.0e-4175.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K2L81.3e-4074.19Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1[more]
A0A7N2N0563.5e-1750.00Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A2N9HB174.3e-1549.18Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39448 PE=4 SV=1[more]
A0A2P5EWK14.3e-1554.17Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_142120 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33148:SF4OS02G0667300 PROTEINcoord: 9..122
NoneNo IPR availablePANTHERPTHR33148PLASTID MOVEMENT IMPAIRED PROTEIN-RELATEDcoord: 9..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009685.1Sed0009685.1mRNA