Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGACGGGAAGCAGATATCGTCACCGAACGGAGTTTTCCGGCGACTTTTCAGAGCACGGTGCCGGAAAAATGCGAGGACCAATAATCTATTGGAAGCCATTGCCAAATCAAGCGGAGATGGAACTGCTTCTGTTTCTCAGATCGAAGAAAACGGAGTCGTAAGGATCAAGATGGTGGTGAAGAAGGCGGATTTGGCTCAATTTCTGGAATCCATGGGCGGCGGAAGCGGCGGCCGCAGAGTTTCTCCGGCGTCGATCTCCGCCGAACAACGGCTGGCGCTTGTTAGACGAAAGCAAATTCTCCGAGCCAAACTTGCGGCTGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATGAAGAAAACGATCGGCTTCGTAACTAA
mRNA sequence
ATGATCGACGGGAAGCAGATATCGTCACCGAACGGAGTTTTCCGGCGACTTTTCAGAGCACGGTGCCGGAAAAATGCGAGGACCAATAATCTATTGGAAGCCATTGCCAAATCAAGCGGAGATGGAACTGCTTCTGTTTCTCAGATCGAAGAAAACGGAGTCGTAAGGATCAAGATGGTGGTGAAGAAGGCGGATTTGGCTCAATTTCTGGAATCCATGGGCGGCGGAAGCGGCGGCCGCAGAGTTTCTCCGGCGTCGATCTCCGCCGAACAACGGCTGGCGCTTGTTAGACGAAAGCAAATTCTCCGAGCCAAACTTGCGGCTGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATGAAGAAAACGATCGGCTTCGTAACTAA
Coding sequence (CDS)
ATGATCGACGGGAAGCAGATATCGTCACCGAACGGAGTTTTCCGGCGACTTTTCAGAGCACGGTGCCGGAAAAATGCGAGGACCAATAATCTATTGGAAGCCATTGCCAAATCAAGCGGAGATGGAACTGCTTCTGTTTCTCAGATCGAAGAAAACGGAGTCGTAAGGATCAAGATGGTGGTGAAGAAGGCGGATTTGGCTCAATTTCTGGAATCCATGGGCGGCGGAAGCGGCGGCCGCAGAGTTTCTCCGGCGTCGATCTCCGCCGAACAACGGCTGGCGCTTGTTAGACGAAAGCAAATTCTCCGAGCCAAACTTGCGGCTGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATGAAGAAAACGATCGGCTTCGTAACTAA
Protein sequence
MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMVVKKADLAQFLESMGGGSGGRRVSPASISAEQRLALVRRKQILRAKLAAATWSPALQSIPEEIDEENDRLRN
Homology
BLAST of Sed0009685 vs. NCBI nr
Match:
XP_023511743.1 (uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 181.8 bits (460), Expect = 3.8e-42
Identity = 96/123 (78.05%), Postives = 106/123 (86.18%), Query Frame = 0
Query: 1 MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
MIDGKQ +SPNG FRRLFRAR RKNA+ +NLLEAIAK S +GT VSQ EE+GVVRIKMV
Sbjct: 1 MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60
Query: 61 VKKADLAQFLESMGGGSGGRRVSPASISAEQRLALVRRKQILRAKLAAATWSPALQSIPE 120
VKK DLAQ LE+M GG GG V+PAS+S EQRLA++RRKQ LRAKLAAATWSPALQSIPE
Sbjct: 61 VKKTDLAQVLEAMAGGGGGGGVAPASVSVEQRLAIMRRKQFLRAKLAAATWSPALQSIPE 120
Query: 121 EID 124
EID
Sbjct: 121 EID 123
BLAST of Sed0009685 vs. NCBI nr
Match:
KAA0025124.1 (hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK19366.1 hypothetical protein E5676_scaffold3037G00200 [Cucumis melo var. makuwa])
HSP 1 Score: 178.3 bits (451), Expect = 4.2e-41
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 0
Query: 1 MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
MI+GKQ+ SPNG FRRLFRARCRK+A+ N LLEAIAK+S +GT VS EENGVVRIKMV
Sbjct: 1 MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60
Query: 61 VKKADLAQFLESMGG----GSGGRRVSPASISAEQRLALVRRKQILRAKLAAATWSPALQ 120
VKK DLAQ LE+MGG G GG V+ AS+S EQRLA+VRRKQ+LRAKLAAATWSPALQ
Sbjct: 61 VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120
Query: 121 SIPEEID 124
SIPEEID
Sbjct: 121 SIPEEID 127
BLAST of Sed0009685 vs. NCBI nr
Match:
KGN43274.1 (hypothetical protein Csa_020212 [Cucumis sativus])
HSP 1 Score: 175.6 bits (444), Expect = 2.7e-40
Identity = 92/124 (74.19%), Postives = 104/124 (83.87%), Query Frame = 0
Query: 1 MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
MI+GKQ++SPNG FRRLFRARCRK+A+ N LLEAIAK+S +G VS EENGVVRIKMV
Sbjct: 1 MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60
Query: 61 VKKADLAQFLESMGGGSGGRR-VSPASISAEQRLALVRRKQILRAKLAAATWSPALQSIP 120
VKK DL Q LE+MGGG GG V+PAS+S E RL ++RRKQ LRAKLAAATWSPALQSIP
Sbjct: 61 VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120
Query: 121 EEID 124
EEID
Sbjct: 121 EEID 124
BLAST of Sed0009685 vs. NCBI nr
Match:
KAG6572129.1 (hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 174.9 bits (442), Expect = 4.7e-40
Identity = 93/124 (75.00%), Postives = 104/124 (83.87%), Query Frame = 0
Query: 1 MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
MIDGKQ +SPNG FRRLFRAR RKNA+ +NLLEAIAK S +GT VSQ EE+GVVRIKMV
Sbjct: 1 MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60
Query: 61 VKKADLAQFLESMGGGSGGRRVSPASISAEQRLALVRRKQILRAKLAAATWSPALQSIPE 120
VKK DLAQ LE++ GG GG V+PAS+S E RLA++RRKQ LRAKLAAATWSPALQSIPE
Sbjct: 61 VKKTDLAQVLEALAGGGGGGGVAPASVSVEHRLAIMRRKQFLRAKLAAATWSPALQSIPE 120
Query: 121 EIDE 125
DE
Sbjct: 121 IEDE 124
BLAST of Sed0009685 vs. NCBI nr
Match:
PON89926.1 (hypothetical protein TorRG33x02_142120 [Trema orientale])
HSP 1 Score: 90.9 bits (224), Expect = 8.9e-15
Identity = 65/120 (54.17%), Postives = 81/120 (67.50%), Query Frame = 0
Query: 16 RLFRARCRK---NARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMVVKKADLAQFLES 75
RL RAR + N R+N LL+AIAKS+G VSQ EE+GVVR+K+VV+K DL Q LE
Sbjct: 23 RLHRARNHQKNINTRSNLLLDAIAKSNG----VVSQTEEDGVVRMKIVVRKQDLKQMLEV 82
Query: 76 MGG---GSGGRRVS--PASISAEQRLALVRRKQIL-RAKLA----AATWSPALQSIPEEI 123
MGG G+G S S SAEQRL+L+R+K +L RA LA ++WSP LQSIPEE+
Sbjct: 83 MGGNKQGNGSNNPSSFSPSFSAEQRLSLLRKKHVLMRANLAKQSRRSSWSPVLQSIPEEL 138
BLAST of Sed0009685 vs. ExPASy TrEMBL
Match:
A0A5A7SHL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00200 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 2.0e-41
Identity = 96/127 (75.59%), Postives = 107/127 (84.25%), Query Frame = 0
Query: 1 MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
MI+GKQ+ SPNG FRRLFRARCRK+A+ N LLEAIAK+S +GT VS EENGVVRIKMV
Sbjct: 1 MIEGKQVVSPNGTFRRLFRARCRKSAKANCLLEAIAKASREGTGFVSHSEENGVVRIKMV 60
Query: 61 VKKADLAQFLESMGG----GSGGRRVSPASISAEQRLALVRRKQILRAKLAAATWSPALQ 120
VKK DLAQ LE+MGG G GG V+ AS+S EQRLA+VRRKQ+LRAKLAAATWSPALQ
Sbjct: 61 VKKTDLAQVLEAMGGGGGDGGGGGGVAAASVSIEQRLAIVRRKQLLRAKLAAATWSPALQ 120
Query: 121 SIPEEID 124
SIPEEID
Sbjct: 121 SIPEEID 127
BLAST of Sed0009685 vs. ExPASy TrEMBL
Match:
A0A0A0K2L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1)
HSP 1 Score: 175.6 bits (444), Expect = 1.3e-40
Identity = 92/124 (74.19%), Postives = 104/124 (83.87%), Query Frame = 0
Query: 1 MIDGKQISSPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMV 60
MI+GKQ++SPNG FRRLFRARCRK+A+ N LLEAIAK+S +G VS EENGVVRIKMV
Sbjct: 1 MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60
Query: 61 VKKADLAQFLESMGGGSGGRR-VSPASISAEQRLALVRRKQILRAKLAAATWSPALQSIP 120
VKK DL Q LE+MGGG GG V+PAS+S E RL ++RRKQ LRAKLAAATWSPALQSIP
Sbjct: 61 VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120
Query: 121 EEID 124
EEID
Sbjct: 121 EEID 124
BLAST of Sed0009685 vs. ExPASy TrEMBL
Match:
A0A7N2N056 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 3.5e-17
Identity = 62/124 (50.00%), Postives = 90/124 (72.58%), Query Frame = 0
Query: 9 SPNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMVVKKADLAQ 68
+P VFR+ FRA+ +KN+R +++LE + +G G VS IE++GVVR+K+VVKK DL Q
Sbjct: 10 TPKRVFRQ-FRAQNQKNSR-SDMLETVVNVNGGGV--VSCIEKDGVVRMKIVVKKQDLTQ 69
Query: 69 FLESMGGGSGGR---RVSPA---SISAEQRLALVRRKQILRA----KLAAATWSPALQSI 123
LE MGGG GG+ + P+ S+SAEQRL L+++K +LRA + ++++WSPALQSI
Sbjct: 70 MLEVMGGGGGGKSKAHLQPSIMPSLSAEQRLNLLQKKHVLRANTTKESSSSSWSPALQSI 129
BLAST of Sed0009685 vs. ExPASy TrEMBL
Match:
A0A2N9HB17 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39448 PE=4 SV=1)
HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 60/122 (49.18%), Postives = 82/122 (67.21%), Query Frame = 0
Query: 10 PNGVFRRLFRARCRKNARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMVVKKADLAQF 69
P VF+ + RAR KN+RT N+LE + +G G VS EE+GVVR+K++VKK DL Q
Sbjct: 11 PKQVFQHV-RARNHKNSRT-NILENVVNVNGGGV--VSCYEEDGVVRMKIIVKKQDLTQM 70
Query: 70 LESMGGGSGGR-----RVSPASISAEQRLALVRRKQILRAKLA----AATWSPALQSIPE 123
LE MGGG + ++P S+SAEQRL L+++K +LRA +++WSPALQSIPE
Sbjct: 71 LEVMGGGGKNKAHHQPSITP-SLSAEQRLNLLQKKHLLRANTTKESWSSSWSPALQSIPE 127
BLAST of Sed0009685 vs. ExPASy TrEMBL
Match:
A0A2P5EWK1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_142120 PE=4 SV=1)
HSP 1 Score: 90.9 bits (224), Expect = 4.3e-15
Identity = 65/120 (54.17%), Postives = 81/120 (67.50%), Query Frame = 0
Query: 16 RLFRARCRK---NARTNNLLEAIAKSSGDGTASVSQIEENGVVRIKMVVKKADLAQFLES 75
RL RAR + N R+N LL+AIAKS+G VSQ EE+GVVR+K+VV+K DL Q LE
Sbjct: 23 RLHRARNHQKNINTRSNLLLDAIAKSNG----VVSQTEEDGVVRMKIVVRKQDLKQMLEV 82
Query: 76 MGG---GSGGRRVS--PASISAEQRLALVRRKQIL-RAKLA----AATWSPALQSIPEEI 123
MGG G+G S S SAEQRL+L+R+K +L RA LA ++WSP LQSIPEE+
Sbjct: 83 MGGNKQGNGSNNPSSFSPSFSAEQRLSLLRKKHVLMRANLAKQSRRSSWSPVLQSIPEEL 138
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_023511743.1 | 3.8e-42 | 78.05 | uncharacterized protein LOC111776510 [Cucurbita pepo subsp. pepo] | [more] |
KAA0025124.1 | 4.2e-41 | 75.59 | hypothetical protein E6C27_scaffold124G00220 [Cucumis melo var. makuwa] >TYK1936... | [more] |
KGN43274.1 | 2.7e-40 | 74.19 | hypothetical protein Csa_020212 [Cucumis sativus] | [more] |
KAG6572129.1 | 4.7e-40 | 75.00 | hypothetical protein SDJN03_28857, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
PON89926.1 | 8.9e-15 | 54.17 | hypothetical protein TorRG33x02_142120 [Trema orientale] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SHL7 | 2.0e-41 | 75.59 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0K2L8 | 1.3e-40 | 74.19 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G014600 PE=4 SV=1 | [more] |
A0A7N2N056 | 3.5e-17 | 50.00 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
A0A2N9HB17 | 4.3e-15 | 49.18 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39448 PE=4 SV=1 | [more] |
A0A2P5EWK1 | 4.3e-15 | 54.17 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_142120 PE=4 SV... | [more] |
Match Name | E-value | Identity | Description | |