Sed0009676 (gene) Chayote v1

Overview
NameSed0009676
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein
LocationLG05: 44225301 .. 44226575 (-)
RNA-Seq ExpressionSed0009676
SyntenySed0009676
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGCCTTTGTGGGGAAATCAAGTTGGTTAGGCAGTGTTTTTGACATGTATATGCAAAAAATTGTTTGATTGGTTATGCAGGTAAAGTGTTTGATGAAATTCCCATGAAGAATCTTGTGTGTGCCAATGCACTACTGGCTGAATATGATGAGGCTAGGATGTGGGTCGAGGTGTCAAGGATCCCACGTTTGAAAAGTGGAGGGATCTCCTAGCATTTATAAGATAGGTAGACTACTCCTCTCATCACTAATTGGTTTTAAGATAGATGCTACTATCTGATATGATATTAGTGGCCATTAAACCCAAATGGGTATTTGGTCCAATAAAAATAAATTTTAAATAGGTGAATCCAAATGAGGCACAATCTTGAAGGGGTATGTTGAGGATTCGATATTAGAAAAGTGGAGAGACCTCCTAGCATTTATAAGATAGGTGAGCTACTTCTCTCATCACCAATTGGTTTTGAGATGAATGTATATACTATCAAATTCGACAGACTTAAAAATGCTGCGGCAGATGCATGTTTTGGATTTGAAGTACGATCACTTCACTCTGTCGGCTTCTTTACGTGCATGTGCTGGCTTATCTGCAATTGAACTTGGTAAGCAAGTGCATGCTTATCTACTATGAAAGGCTTATGATATTACTAGTGTTGTACATTTACAAAGCACTTAATTAGAAATGTATGGGAAGAGTGGCATGGTGGAGGAAGCATGAAATGTATTCAATTTTATAGGACTTGGAAAAAAAGAAGATGGTAAAAGGGATATTATAGTGTGGACTTCTATGCATAGTGTATATGAAACAAACGGGTGTCACAAAAGAGTGATTGAACTGTACAACCAGATGTTGATGGAAGGCATCAAACCAGACAGTGTGGTTTTTGTGAGAGTCATATCAGCTTGTGGTCATACTAGAGAGGTGAATCTTGGAGTCGAGTACTTTGATTCCATGCAGAGTGATTTTCGGTTGGAACTTAGTAAAAAACACTACAGTTTGAGCTGGGGAATTGGACAGAGTATGAATGCTCGTGAATGATATCAAAAGCAGGGTTTACAATGTTTCTCTATGGGCAGCTTTACTTCGAGTTTGCTTGGAACATGGAAATATTAAACTGGGTAAATTGGCAGCTTTTAGGGCACTTGAACTTGATCCTCAGAATGCTGGGATATTCATTATGCTATCAAACTATATGCTGGTTTTGGCTTGTGGAATGAGATTAAGCAATTGAGGGGATTTGTGAGAAAAGAACTGTATAAAGCAGTTGGATAG

mRNA sequence

ATGCACGCCTTTGTGGGGAAATCAAGTTGGTTAGGCAGTAAAGTGTTTGATGAAATTCCCATGAAGAATCTTGTGTGTGCCAATGCACTACTGGCTGAATATGATGAGGCTAGGATGTGGGTCGAGGTGTCAAGGATCCCACACTTAAAAATGCTGCGGCAGATGCATGTTTTGGATTTGAAGTACGATCACTTCACTCTGTCGGCTTCTTTACGTGCATGTGCTGGCTTATCTGCTTATGATATTACTAGTGTTGTACATTTACAAAGACTTGGAAAAAAAGAAGATGGTAAAAGGGATATTATAGTGTGGACTTCTATGCATAGTGTATATGAAACAAACGGGTGTCACAAAAGAGTGATTGAACTGTACAACCAGATGTTGATGGAAGGCATCAAACCAGACAGTGTGGTTTTTGTGAGAGTCATATCAGCTTGTGGTCATACTAGAGAGGTGAATCTTGGAGTCGAGTACTTTGATTCCATGCAGAGTGATTTTCGGTTGGAACTTAGTAAAAAACACTACAGTTTGAGCTGGGGAATTGGACAGAGTATGAATGCTCAATGCTGGGATATTCATTATGCTATCAAACTATATGCTGGTTTTGGCTTGTGGAATGAGATTAAGCAATTGAGGGGATTTGTGAGAAAAGAACTGTATAAAGCAGTTGGATAG

Coding sequence (CDS)

ATGCACGCCTTTGTGGGGAAATCAAGTTGGTTAGGCAGTAAAGTGTTTGATGAAATTCCCATGAAGAATCTTGTGTGTGCCAATGCACTACTGGCTGAATATGATGAGGCTAGGATGTGGGTCGAGGTGTCAAGGATCCCACACTTAAAAATGCTGCGGCAGATGCATGTTTTGGATTTGAAGTACGATCACTTCACTCTGTCGGCTTCTTTACGTGCATGTGCTGGCTTATCTGCTTATGATATTACTAGTGTTGTACATTTACAAAGACTTGGAAAAAAAGAAGATGGTAAAAGGGATATTATAGTGTGGACTTCTATGCATAGTGTATATGAAACAAACGGGTGTCACAAAAGAGTGATTGAACTGTACAACCAGATGTTGATGGAAGGCATCAAACCAGACAGTGTGGTTTTTGTGAGAGTCATATCAGCTTGTGGTCATACTAGAGAGGTGAATCTTGGAGTCGAGTACTTTGATTCCATGCAGAGTGATTTTCGGTTGGAACTTAGTAAAAAACACTACAGTTTGAGCTGGGGAATTGGACAGAGTATGAATGCTCAATGCTGGGATATTCATTATGCTATCAAACTATATGCTGGTTTTGGCTTGTGGAATGAGATTAAGCAATTGAGGGGATTTGTGAGAAAAGAACTGTATAAAGCAGTTGGATAG

Protein sequence

MHAFVGKSSWLGSKVFDEIPMKNLVCANALLAEYDEARMWVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRACAGLSAYDITSVVHLQRLGKKEDGKRDIIVWTSMHSVYETNGCHKRVIELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSDFRLELSKKHYSLSWGIGQSMNAQCWDIHYAIKLYAGFGLWNEIKQLRGFVRKELYKAVG
Homology
BLAST of Sed0009676 vs. NCBI nr
Match: XP_008457622.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo] >XP_008457623.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo] >XP_016902170.1 PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo] >KAA0045664.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99619.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 257.3 bits (656), Expect = 1.2e-64
Identity = 161/334 (48.20%), Postives = 182/334 (54.49%), Query Frame = 0

Query: 1   MHAFVGKSSWLGS---------------------KVFDEIPMKNLVCANALLAEYDEARM 60
           +HAFVGKS WL S                     +VFDE+PMKN VCANALLA Y EARM
Sbjct: 133 IHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYGEARM 192

Query: 61  WVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRACAGLSA---------------YDITS 120
           WVE      L++LR+M  LDLKYD FTLSASLRACAGLSA               YDITS
Sbjct: 193 WVE-----GLELLRKMQGLDLKYDQFTLSASLRACAGLSAIALGKQLHAYILRTVYDITS 252

Query: 121 VVHLQR-----------------------LGKKEDGKRDIIVWTSMHSVYETNGCHKRVI 180
            VHLQ                        LG +EDGKRDII+WTSM SVY  NGC+KRVI
Sbjct: 253 DVHLQSTLVEMYGKNGMVEKAWNVFNFAGLGHREDGKRDIIMWTSMLSVYGRNGCYKRVI 312

Query: 181 ELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSDFRLELSKKHYSL---- 225
           ELYNQMLMEGIKPD V FV VISACGHT EVNLGV+YFDSMQSDF LE  ++HYS     
Sbjct: 313 ELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVKYFDSMQSDFGLEPGQEHYSCLADL 372

BLAST of Sed0009676 vs. NCBI nr
Match: XP_038901137.1 (pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida] >XP_038901138.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida] >XP_038901139.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida] >XP_038901140.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida] >XP_038901141.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida] >XP_038901143.1 pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 256.5 bits (654), Expect = 2.1e-64
Identity = 162/336 (48.21%), Postives = 182/336 (54.17%), Query Frame = 0

Query: 1   MHAFVGKSSWLGS---------------------KVFDEIPMKNLVCANALLAEYDEARM 60
           +HAFVGKS WL S                     +VFDEIPMKN VCANALLA Y EARM
Sbjct: 140 IHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVEVFDEIPMKNTVCANALLAGYGEARM 199

Query: 61  WVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRACAGLSA---------------YDITS 120
           WVE      L++LR+M  LDLKYD FTLSASLRACAGLSA               YDIT 
Sbjct: 200 WVE-----GLELLREMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYLLRTVYDITC 259

Query: 121 VVHLQR-----------------------LGKKEDGKRDIIVWTSMHSVYETNGCHKRVI 180
            VHLQ                        L +KEDGKRDII+WTSM SVY  NGC+KRVI
Sbjct: 260 DVHLQSTLIEMYGKSGMVEKAWNVFNFAGLRQKEDGKRDIIMWTSMLSVYGRNGCYKRVI 319

Query: 181 ELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSDFRLELSKKHYSL---- 225
           ELYNQMLMEG KPD V FV VISACGHT EVNLGV+YFDSMQSDF LE  ++HYS     
Sbjct: 320 ELYNQMLMEGNKPDRVAFVTVISACGHTGEVNLGVKYFDSMQSDFGLEPGQEHYSCLVDL 379

BLAST of Sed0009676 vs. NCBI nr
Match: XP_031736718.1 (pentatricopeptide repeat-containing protein At5g04780, mitochondrial [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 6.7e-63
Identity = 160/333 (48.05%), Postives = 178/333 (53.45%), Query Frame = 0

Query: 1   MHAFVGKSSWLGS---------------------KVFDEIPMKNLVCANALLAEYDEARM 60
           +HAFVGKS WL S                     +VFDE+PMKN VCANALLA Y EARM
Sbjct: 37  IHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYGEARM 96

Query: 61  WVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRACAGLSA---------------YDITS 120
           WVE      L++LR+M  LDLKYD FTLSASLRAC GLSA               YDITS
Sbjct: 97  WVE-----GLELLRKMQGLDLKYDQFTLSASLRACTGLSAIALGKQVHAYILRTVYDITS 156

Query: 121 VVHLQR-----------------------LGKKEDGKRDIIVWTSMHSVYETNGCHKRVI 180
            VHLQ                        LG++EDGKRDII+WTSM SVY  NGC+KRVI
Sbjct: 157 DVHLQSTLVEMYGKNGMVEKAWNVFKFAGLGRQEDGKRDIIMWTSMLSVYGRNGCYKRVI 216

Query: 181 ELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSDFRLELSKKHYSL---- 224
           ELYNQMLMEGIKPD V FV VISACGHT EVNLGV+YFDSMQSDF LE  ++HYS     
Sbjct: 217 ELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVQYFDSMQSDFGLEPGQEHYSCLADL 276

BLAST of Sed0009676 vs. NCBI nr
Match: XP_022944055.1 (pentatricopeptide repeat-containing protein At1g50270-like [Cucurbita moschata] >KAG7010880.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.1 bits (640), Expect = 8.8e-63
Identity = 157/334 (47.01%), Postives = 183/334 (54.79%), Query Frame = 0

Query: 1   MHAFVGKSSWLGS---------------------KVFDEIPMKNLVCANALLAEYDEARM 60
           MHAFVGKS WL S                     KVFDEIP+KN VCANALLA Y +A M
Sbjct: 140 MHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASM 199

Query: 61  WVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRACAGLSA---------------YDITS 120
           W++      L++LR+M+VLDLKYD FTLSASLRAC GLSA               YDI+S
Sbjct: 200 WID-----GLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISS 259

Query: 121 VVHLQR-----------------------LGKKEDGKRDIIVWTSMHSVYETNGCHKRVI 180
            VHLQ                        LG+KEDGKRDII+WTSM S Y  NGC+ RVI
Sbjct: 260 DVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVI 319

Query: 181 ELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSDFRLELSKKHYSL---- 225
           ELYNQMLMEGIKPD V FV VISACGHT +VNLGV+YFDSMQS F LE  ++HYS     
Sbjct: 320 ELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDL 379

BLAST of Sed0009676 vs. NCBI nr
Match: XP_022986554.1 (pentatricopeptide repeat-containing protein At1g50270-like [Cucurbita maxima])

HSP 1 Score: 248.8 bits (634), Expect = 4.3e-62
Identity = 157/334 (47.01%), Postives = 181/334 (54.19%), Query Frame = 0

Query: 1   MHAFVGKSSWLGS---------------------KVFDEIPMKNLVCANALLAEYDEARM 60
           MHAFVGKS WL S                     KVFDEIP+KN VCANALLA Y +A M
Sbjct: 52  MHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASM 111

Query: 61  WVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRACAGLSA---------------YDITS 120
           W +      L++LR+MHVLDLKYD FTLSASLRAC GLSA               YDI+S
Sbjct: 112 WFD-----GLELLRKMHVLDLKYDRFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISS 171

Query: 121 VVHLQR-----------------------LGKKEDGKRDIIVWTSMHSVYETNGCHKRVI 180
            VHLQ                        LG+KEDGKRDII+WTSM S Y  NGC+ RVI
Sbjct: 172 DVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVI 231

Query: 181 ELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSDFRLELSKKHYSL---- 225
           ELYNQMLMEGIKPD V FV VISACGHT +VNLGV+YFDSMQS F LE  ++HYS     
Sbjct: 232 ELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDL 291

BLAST of Sed0009676 vs. ExPASy Swiss-Prot
Match: Q9CAY1 (Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-16
Identity = 55/194 (28.35%), Postives = 94/194 (48.45%), Query Frame = 0

Query: 12  GSKVFDEIPMKNLVCANALLAEYDEARMWVEVSRIPHLKMLRQMHVLDLKYDHFTLSASL 71
           G ++FDE+P+K L+  NA+++ Y +  +  +V     L++  QM    +  D FTL + L
Sbjct: 210 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDV-----LELYEQMKSSGVCPDPFTLVSVL 269

Query: 72  RACAGLSAYDI---------------------TSVVHLQRLGKKEDGK--------RDII 131
            +CA L A  I                      S+    R G     +        + ++
Sbjct: 270 SSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLV 329

Query: 132 VWTSMHSVYETNGCHKRVIELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSM 177
            WT+M   Y  +G  +  + L++ M+  GI+PD  VFV V+SAC H+   + G+E F +M
Sbjct: 330 SWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAM 389

BLAST of Sed0009676 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-16
Identity = 55/192 (28.65%), Postives = 98/192 (51.04%), Query Frame = 0

Query: 15  VFDEIPMKNLVCANALLAEYDEARMWVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRAC 74
           +FDE+P +N V  N++++ +     + +      L M R+M   D+K D FT+ + L AC
Sbjct: 214 LFDEMPQRNGVSWNSMISGFVRNGRFKDA-----LDMFREMQEKDVKPDGFTMVSLLNAC 273

Query: 75  AGLSAYD--------------------ITSVVHLQ-RLGKKEDG--------KRDIIVWT 134
           A L A +                    +T+++ +  + G  E+G        K+ +  W 
Sbjct: 274 AYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWN 333

Query: 135 SMHSVYETNGCHKRVIELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSD 178
           SM      NG  +R ++L++++   G++PDSV F+ V++AC H+ EV+   E+F  M+  
Sbjct: 334 SMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEK 393

BLAST of Sed0009676 vs. ExPASy Swiss-Prot
Match: O49287 (Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E5 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-15
Identity = 70/246 (28.46%), Postives = 113/246 (45.93%), Query Frame = 0

Query: 14  KVFDEIPMKNLVCANALLAEYDEARMWVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRA 73
           +VF+ I  K+L+  N++   + +    VE      L+   QMH LDL  D  +LS+ + A
Sbjct: 405 RVFERIENKSLISWNSMTNGFSQNGCTVET-----LEYFHQMHKLDLPTDEVSLSSVISA 464

Query: 74  CAGLSAYDI--------------------TSVVHLQ-RLGKKEDGKR--------DIIVW 133
           CA +S+ ++                    +S++ L  + G  E G+R        D + W
Sbjct: 465 CASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPW 524

Query: 134 TSMHSVYETNGCHKRVIELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQS 193
            SM S Y TNG     I+L+ +M + GI+P  + F+ V++AC +   V  G + F+SM+ 
Sbjct: 525 NSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKV 584

Query: 194 DFRLELSKKHYSLSWGIGQSMNAQCWDIHYAIKLYAGF------GLWNEIKQLRGFVRKE 225
           D      K+H+S        + A+   +  AI L           +W+ I  LRG V   
Sbjct: 585 DHGFVPDKEHFSCM----VDLLARAGYVEEAINLVEEMPFDVDGSMWSSI--LRGCVANG 638

BLAST of Sed0009676 vs. ExPASy Swiss-Prot
Match: Q9LXY5 (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.1e-15
Identity = 52/194 (26.80%), Postives = 91/194 (46.91%), Query Frame = 0

Query: 11  LGSKVFDEIPMKNLVCANALLAEYDEARMWVEVSRIPHLKMLRQMHVLDLKYDHFTLSAS 70
           + SKVFDE+P+++LV  N ++  +    +  +      L M ++M    +  D +TL A 
Sbjct: 160 IASKVFDEMPVRDLVSWNVMICCFSHVGLHNQA-----LSMYKRMGNEGVCGDSYTLVAL 219

Query: 71  LRACAGLSAYDITSVVH---------------------LQRLGKKEDG--------KRDI 130
           L +CA +SA ++  ++H                       + G  E+         KRD+
Sbjct: 220 LSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDV 279

Query: 131 IVWTSMHSVYETNGCHKRVIELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDS 176
           + W SM   Y  +G     I  + +M+  G++P+++ F+ ++  C H   V  GVE+F+ 
Sbjct: 280 LTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEI 339

BLAST of Sed0009676 vs. ExPASy Swiss-Prot
Match: O49399 (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 9.2e-15
Identity = 54/191 (28.27%), Postives = 91/191 (47.64%), Query Frame = 0

Query: 14  KVFDEIPMKNLVCANALLAEYDEARMWVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRA 73
           +VFD +P++++V  NA++  Y     + EV  + + KML        K D FTL + L A
Sbjct: 258 EVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFN-KMLDDS---TEKPDGFTLVSVLSA 317

Query: 74  CAGLSAYDITSVVHL---------------------QRLGK--------KEDGKRDIIVW 133
           CA L +      VH+                      + GK        +   KRD+  W
Sbjct: 318 CASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTW 377

Query: 134 TSMHSVYETNGCHKRVIELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQS 176
            S+ S    +G  K  +E++++M+ EG KP+ + F+ V+SAC H   ++   + F+ M S
Sbjct: 378 NSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSS 437

BLAST of Sed0009676 vs. ExPASy TrEMBL
Match: A0A1S3C6K8 (pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=3656 GN=LOC103497272 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 5.9e-65
Identity = 161/334 (48.20%), Postives = 182/334 (54.49%), Query Frame = 0

Query: 1   MHAFVGKSSWLGS---------------------KVFDEIPMKNLVCANALLAEYDEARM 60
           +HAFVGKS WL S                     +VFDE+PMKN VCANALLA Y EARM
Sbjct: 133 IHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYGEARM 192

Query: 61  WVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRACAGLSA---------------YDITS 120
           WVE      L++LR+M  LDLKYD FTLSASLRACAGLSA               YDITS
Sbjct: 193 WVE-----GLELLRKMQGLDLKYDQFTLSASLRACAGLSAIALGKQLHAYILRTVYDITS 252

Query: 121 VVHLQR-----------------------LGKKEDGKRDIIVWTSMHSVYETNGCHKRVI 180
            VHLQ                        LG +EDGKRDII+WTSM SVY  NGC+KRVI
Sbjct: 253 DVHLQSTLVEMYGKNGMVEKAWNVFNFAGLGHREDGKRDIIMWTSMLSVYGRNGCYKRVI 312

Query: 181 ELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSDFRLELSKKHYSL---- 225
           ELYNQMLMEGIKPD V FV VISACGHT EVNLGV+YFDSMQSDF LE  ++HYS     
Sbjct: 313 ELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVKYFDSMQSDFGLEPGQEHYSCLADL 372

BLAST of Sed0009676 vs. ExPASy TrEMBL
Match: A0A5D3BKX2 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001930 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 5.9e-65
Identity = 161/334 (48.20%), Postives = 182/334 (54.49%), Query Frame = 0

Query: 1   MHAFVGKSSWLGS---------------------KVFDEIPMKNLVCANALLAEYDEARM 60
           +HAFVGKS WL S                     +VFDE+PMKN VCANALLA Y EARM
Sbjct: 133 IHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYGEARM 192

Query: 61  WVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRACAGLSA---------------YDITS 120
           WVE      L++LR+M  LDLKYD FTLSASLRACAGLSA               YDITS
Sbjct: 193 WVE-----GLELLRKMQGLDLKYDQFTLSASLRACAGLSAIALGKQLHAYILRTVYDITS 252

Query: 121 VVHLQR-----------------------LGKKEDGKRDIIVWTSMHSVYETNGCHKRVI 180
            VHLQ                        LG +EDGKRDII+WTSM SVY  NGC+KRVI
Sbjct: 253 DVHLQSTLVEMYGKNGMVEKAWNVFNFAGLGHREDGKRDIIMWTSMLSVYGRNGCYKRVI 312

Query: 181 ELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSDFRLELSKKHYSL---- 225
           ELYNQMLMEGIKPD V FV VISACGHT EVNLGV+YFDSMQSDF LE  ++HYS     
Sbjct: 313 ELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVKYFDSMQSDFGLEPGQEHYSCLADL 372

BLAST of Sed0009676 vs. ExPASy TrEMBL
Match: A0A0A0LLD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258600 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.2e-63
Identity = 160/333 (48.05%), Postives = 178/333 (53.45%), Query Frame = 0

Query: 1   MHAFVGKSSWLGS---------------------KVFDEIPMKNLVCANALLAEYDEARM 60
           +HAFVGKS WL S                     +VFDE+PMKN VCANALLA Y EARM
Sbjct: 133 IHAFVGKSGWLCSVFVGSAIVDMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYGEARM 192

Query: 61  WVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRACAGLSA---------------YDITS 120
           WVE      L++LR+M  LDLKYD FTLSASLRAC GLSA               YDITS
Sbjct: 193 WVE-----GLELLRKMQGLDLKYDQFTLSASLRACTGLSAIALGKQVHAYILRTVYDITS 252

Query: 121 VVHLQR-----------------------LGKKEDGKRDIIVWTSMHSVYETNGCHKRVI 180
            VHLQ                        LG++EDGKRDII+WTSM SVY  NGC+KRVI
Sbjct: 253 DVHLQSTLVEMYGKNGMVEKAWNVFKFAGLGRQEDGKRDIIMWTSMLSVYGRNGCYKRVI 312

Query: 181 ELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSDFRLELSKKHYSL---- 224
           ELYNQMLMEGIKPD V FV VISACGHT EVNLGV+YFDSMQSDF LE  ++HYS     
Sbjct: 313 ELYNQMLMEGIKPDRVAFVTVISACGHTGEVNLGVQYFDSMQSDFGLEPGQEHYSCLADL 372

BLAST of Sed0009676 vs. ExPASy TrEMBL
Match: A0A6J1FYF9 (pentatricopeptide repeat-containing protein At1g50270-like OS=Cucurbita moschata OX=3662 GN=LOC111448605 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 4.2e-63
Identity = 157/334 (47.01%), Postives = 183/334 (54.79%), Query Frame = 0

Query: 1   MHAFVGKSSWLGS---------------------KVFDEIPMKNLVCANALLAEYDEARM 60
           MHAFVGKS WL S                     KVFDEIP+KN VCANALLA Y +A M
Sbjct: 140 MHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASM 199

Query: 61  WVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRACAGLSA---------------YDITS 120
           W++      L++LR+M+VLDLKYD FTLSASLRAC GLSA               YDI+S
Sbjct: 200 WID-----GLELLRKMYVLDLKYDQFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISS 259

Query: 121 VVHLQR-----------------------LGKKEDGKRDIIVWTSMHSVYETNGCHKRVI 180
            VHLQ                        LG+KEDGKRDII+WTSM S Y  NGC+ RVI
Sbjct: 260 DVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVI 319

Query: 181 ELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSDFRLELSKKHYSL---- 225
           ELYNQMLMEGIKPD V FV VISACGHT +VNLGV+YFDSMQS F LE  ++HYS     
Sbjct: 320 ELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDL 379

BLAST of Sed0009676 vs. ExPASy TrEMBL
Match: A0A6J1JGD1 (pentatricopeptide repeat-containing protein At1g50270-like OS=Cucurbita maxima OX=3661 GN=LOC111484258 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.1e-62
Identity = 157/334 (47.01%), Postives = 181/334 (54.19%), Query Frame = 0

Query: 1   MHAFVGKSSWLGS---------------------KVFDEIPMKNLVCANALLAEYDEARM 60
           MHAFVGKS WL S                     KVFDEIP+KN VCANALLA Y +A M
Sbjct: 52  MHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVKVFDEIPVKNTVCANALLAGYGDASM 111

Query: 61  WVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRACAGLSA---------------YDITS 120
           W +      L++LR+MHVLDLKYD FTLSASLRAC GLSA               YDI+S
Sbjct: 112 WFD-----GLELLRKMHVLDLKYDRFTLSASLRACTGLSAIALGKQVHAYLLRTVYDISS 171

Query: 121 VVHLQR-----------------------LGKKEDGKRDIIVWTSMHSVYETNGCHKRVI 180
            VHLQ                        LG+KEDGKRDII+WTSM S Y  NGC+ RVI
Sbjct: 172 DVHLQSTLIEMYGKSGMVEKAWNVFVFAGLGQKEDGKRDIIMWTSMLSAYGRNGCYIRVI 231

Query: 181 ELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSDFRLELSKKHYSL---- 225
           ELYNQMLMEGIKPD V FV VISACGHT +VNLGV+YFDSMQS F LE  ++HYS     
Sbjct: 232 ELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSVFGLEPGQEHYSCLVDL 291

BLAST of Sed0009676 vs. TAIR 10
Match: AT3G11460.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-17
Identity = 55/194 (28.35%), Postives = 94/194 (48.45%), Query Frame = 0

Query: 12  GSKVFDEIPMKNLVCANALLAEYDEARMWVEVSRIPHLKMLRQMHVLDLKYDHFTLSASL 71
           G ++FDE+P+K L+  NA+++ Y +  +  +V     L++  QM    +  D FTL + L
Sbjct: 210 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDV-----LELYEQMKSSGVCPDPFTLVSVL 269

Query: 72  RACAGLSAYDI---------------------TSVVHLQRLGKKEDGK--------RDII 131
            +CA L A  I                      S+    R G     +        + ++
Sbjct: 270 SSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLV 329

Query: 132 VWTSMHSVYETNGCHKRVIELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSM 177
            WT+M   Y  +G  +  + L++ M+  GI+PD  VFV V+SAC H+   + G+E F +M
Sbjct: 330 SWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAM 389

BLAST of Sed0009676 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-17
Identity = 55/192 (28.65%), Postives = 98/192 (51.04%), Query Frame = 0

Query: 15  VFDEIPMKNLVCANALLAEYDEARMWVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRAC 74
           +FDE+P +N V  N++++ +     + +      L M R+M   D+K D FT+ + L AC
Sbjct: 214 LFDEMPQRNGVSWNSMISGFVRNGRFKDA-----LDMFREMQEKDVKPDGFTMVSLLNAC 273

Query: 75  AGLSAYD--------------------ITSVVHLQ-RLGKKEDG--------KRDIIVWT 134
           A L A +                    +T+++ +  + G  E+G        K+ +  W 
Sbjct: 274 AYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWN 333

Query: 135 SMHSVYETNGCHKRVIELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQSD 178
           SM      NG  +R ++L++++   G++PDSV F+ V++AC H+ EV+   E+F  M+  
Sbjct: 334 SMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEK 393

BLAST of Sed0009676 vs. TAIR 10
Match: AT1G77010.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 70/246 (28.46%), Postives = 113/246 (45.93%), Query Frame = 0

Query: 14  KVFDEIPMKNLVCANALLAEYDEARMWVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRA 73
           +VF+ I  K+L+  N++   + +    VE      L+   QMH LDL  D  +LS+ + A
Sbjct: 405 RVFERIENKSLISWNSMTNGFSQNGCTVET-----LEYFHQMHKLDLPTDEVSLSSVISA 464

Query: 74  CAGLSAYDI--------------------TSVVHLQ-RLGKKEDGKR--------DIIVW 133
           CA +S+ ++                    +S++ L  + G  E G+R        D + W
Sbjct: 465 CASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPW 524

Query: 134 TSMHSVYETNGCHKRVIELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQS 193
            SM S Y TNG     I+L+ +M + GI+P  + F+ V++AC +   V  G + F+SM+ 
Sbjct: 525 NSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKV 584

Query: 194 DFRLELSKKHYSLSWGIGQSMNAQCWDIHYAIKLYAGF------GLWNEIKQLRGFVRKE 225
           D      K+H+S        + A+   +  AI L           +W+ I  LRG V   
Sbjct: 585 DHGFVPDKEHFSCM----VDLLARAGYVEEAINLVEEMPFDVDGSMWSSI--LRGCVANG 638

BLAST of Sed0009676 vs. TAIR 10
Match: AT3G56550.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 5.0e-16
Identity = 52/194 (26.80%), Postives = 91/194 (46.91%), Query Frame = 0

Query: 11  LGSKVFDEIPMKNLVCANALLAEYDEARMWVEVSRIPHLKMLRQMHVLDLKYDHFTLSAS 70
           + SKVFDE+P+++LV  N ++  +    +  +      L M ++M    +  D +TL A 
Sbjct: 160 IASKVFDEMPVRDLVSWNVMICCFSHVGLHNQA-----LSMYKRMGNEGVCGDSYTLVAL 219

Query: 71  LRACAGLSAYDITSVVH---------------------LQRLGKKEDG--------KRDI 130
           L +CA +SA ++  ++H                       + G  E+         KRD+
Sbjct: 220 LSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDV 279

Query: 131 IVWTSMHSVYETNGCHKRVIELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDS 176
           + W SM   Y  +G     I  + +M+  G++P+++ F+ ++  C H   V  GVE+F+ 
Sbjct: 280 LTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEI 339

BLAST of Sed0009676 vs. TAIR 10
Match: AT4G18840.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 6.6e-16
Identity = 54/191 (28.27%), Postives = 91/191 (47.64%), Query Frame = 0

Query: 14  KVFDEIPMKNLVCANALLAEYDEARMWVEVSRIPHLKMLRQMHVLDLKYDHFTLSASLRA 73
           +VFD +P++++V  NA++  Y     + EV  + + KML        K D FTL + L A
Sbjct: 258 EVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFN-KMLDDS---TEKPDGFTLVSVLSA 317

Query: 74  CAGLSAYDITSVVHL---------------------QRLGK--------KEDGKRDIIVW 133
           CA L +      VH+                      + GK        +   KRD+  W
Sbjct: 318 CASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTW 377

Query: 134 TSMHSVYETNGCHKRVIELYNQMLMEGIKPDSVVFVRVISACGHTREVNLGVEYFDSMQS 176
            S+ S    +G  K  +E++++M+ EG KP+ + F+ V+SAC H   ++   + F+ M S
Sbjct: 378 NSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSS 437

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008457622.11.2e-6448.20PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis m... [more]
XP_038901137.12.1e-6448.21pentatricopeptide repeat-containing protein At5g04780, mitochondrial-like [Benin... [more]
XP_031736718.16.7e-6348.05pentatricopeptide repeat-containing protein At5g04780, mitochondrial [Cucumis sa... [more]
XP_022944055.18.8e-6347.01pentatricopeptide repeat-containing protein At1g50270-like [Cucurbita moschata] ... [more]
XP_022986554.14.3e-6247.01pentatricopeptide repeat-containing protein At1g50270-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q9CAY12.2e-1628.35Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS... [more]
Q9SJG62.9e-1628.65Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop... [more]
O492871.9e-1528.46Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS... [more]
Q9LXY57.1e-1526.80Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana OX... [more]
O493999.2e-1528.27Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A1S3C6K85.9e-6548.20pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=36... [more]
A0A5D3BKX25.9e-6548.20Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0LLD63.2e-6348.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G258600 PE=4 SV=1[more]
A0A6J1FYF94.2e-6347.01pentatricopeptide repeat-containing protein At1g50270-like OS=Cucurbita moschata... [more]
A0A6J1JGD12.1e-6247.01pentatricopeptide repeat-containing protein At1g50270-like OS=Cucurbita maxima O... [more]
Match NameE-valueIdentityDescription
AT3G11460.11.6e-1728.35Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G42920.12.0e-1728.65Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G77010.11.3e-1628.46Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G56550.15.0e-1626.80Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G18840.16.6e-1628.27Pentatricopeptide repeat (PPR-like) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 11..210
e-value: 4.2E-16
score: 61.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 103..132
e-value: 8.2E-4
score: 19.5
coord: 139..164
e-value: 1.1
score: 9.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 100..134
score: 9.361008
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 13..89
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 94..176
NoneNo IPR availablePANTHERPTHR47928:SF115OS02G0126500 PROTEINcoord: 94..176
NoneNo IPR availablePANTHERPTHR47928:SF115OS02G0126500 PROTEINcoord: 13..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009676.1Sed0009676.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding