Sed0009635 (gene) Chayote v1

Overview


Name	Sed0009635
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNase H domain-containing protein
Location	LG14: 2784856 .. 2785173 (-)
RNA-Seq Expression	Sed0009635
Synteny	Sed0009635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTTGTTTCAAAACCAATATCAGGTGGTGTGGATGCAGAGTTTGTGGAAGCTATGGCTATTCATGAAGGTGTGGAGATTGCTTTAACGTTGGGGTTCAAAAGAGTTGAGGTTGAATCTGATGCCTTACGGGTGATACATTTACTTCAAAATCAAGCAAATGATCTTTCAGAGGTGGGTAGAATCGTTGAAGAAACTCTAAGGTTGGCACGCAACTTTGAATACATTGATTTTAGTTGGATTGGACGAGATGCTAACAGGTTAGCTCATAATTTGGCGCAGTTTGCGGCTGTCGAGCTCGAAGAACATCAATGA

mRNA sequence

ATGTTTGTTGTTTCAAAACCAATATCAGGTGGTGTGGATGCAGAGTTTGTGGAAGCTATGGCTATTCATGAAGGTGTGGAGATTGCTTTAACGTTGGGGTTCAAAAGAGTTGAGGTTGAATCTGATGCCTTACGGGTGATACATTTACTTCAAAATCAAGCAAATGATCTTTCAGAGGTGGGTAGAATCGTTGAAGAAACTCTAAGGTTGGCACGCAACTTTGAATACATTGATTTTAGTTGGATTGGACGAGATGCTAACAGGTTAGCTCATAATTTGGCGCAGTTTGCGGCTGTCGAGCTCGAAGAACATCAATGA

Coding sequence (CDS)

ATGTTTGTTGTTTCAAAACCAATATCAGGTGGTGTGGATGCAGAGTTTGTGGAAGCTATGGCTATTCATGAAGGTGTGGAGATTGCTTTAACGTTGGGGTTCAAAAGAGTTGAGGTTGAATCTGATGCCTTACGGGTGATACATTTACTTCAAAATCAAGCAAATGATCTTTCAGAGGTGGGTAGAATCGTTGAAGAAACTCTAAGGTTGGCACGCAACTTTGAATACATTGATTTTAGTTGGATTGGACGAGATGCTAACAGGTTAGCTCATAATTTGGCGCAGTTTGCGGCTGTCGAGCTCGAAGAACATCAATGA

Protein sequence

MFVVSKPISGGVDAEFVEAMAIHEGVEIALTLGFKRVEVESDALRVIHLLQNQANDLSEVGRIVEETLRLARNFEYIDFSWIGRDANRLAHNLAQFAAVELEEHQ

Homology

[Close]

BLAST of Sed0009635 vs. NCBI nr
Match: KAF7821986.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora])

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-11
Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1   MFVVSKPISGGVDAEFVEAMAIHEGVEIALTLGFKRVEVESDALRVIHLLQNQANDLSEV 60
           +  +SK +  G   E+VEA+A+ EG++ A  +   R+ +ESDA RV++LL     D+S +
Sbjct: 525 LMAMSKKVKTGATIEYVEALAVLEGMKQAQLMCCNRIIIESDAQRVVNLLNKGNIDISYL 584

Query: 61  GRIVEETLRLARNFEYIDFSWIGRDANRLAHNLA 95
           G ++EE L L  +F  I F+W+ R+AN +AH LA
Sbjct: 585 GLVIEEILELKSHFSSISFNWVKREANMVAHTLA 618

[Close]

BLAST of Sed0009635 vs. NCBI nr
Match: KAF7822031.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora])

HSP 1 Score: 74.7 bits (182), Expect = 5.3e-10
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 1   MFVVSKPISGGVDAEFVEAMAIHEGVEIALTLGFKRVEVESDALRVIHLLQNQANDLSEV 60
           +  +SK +  G   E+VEA+A+ EG++ A  +   R+ +ESDA RV++LL     D+S +
Sbjct: 635 LMAMSKKVETGATIEYVEALAVLEGMKQAQLMCCNRIIIESDAQRVVNLLNKGNTDVSYL 694

Query: 61  GRIVEETLRLARNFEYIDFSWIGRDANRLAHNLA 95
           G + E+ L L  +F  I F+W+ R+AN +AH LA
Sbjct: 695 GLVNEDILELKSHFSSIPFNWVKREANMVAHTLA 728

[Close]

BLAST of Sed0009635 vs. NCBI nr
Match: PRQ37402.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 7   PISGGVDAEFVEAMAIHEGVEIALTLGFKRVEVESDALRVIHLLQNQANDLSEVGRIVEE 66
           P +  +    VEA+A+ EG+  +  LG + +EVE DAL +I+ L    NDL+E+G ++E 
Sbjct: 466 PFAATLKPSAVEALALQEGLRYSRLLGIRNLEVEGDALCIINSLSQTENDLTEIGAVLEG 525

Query: 67  TLRLARNFEYIDFSWIGRDANRLAHNLAQFA 98
              L + FE++++  + + AN++AH LA+ A
Sbjct: 526 VRLLLQEFEFVNWKHVRKKANQVAHELARSA 556

[Close]

BLAST of Sed0009635 vs. NCBI nr
Match: KAF8399913.1 (hypothetical protein HHK36_015783 [Tetracentron sinense])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 1   MFVVSKPISGGVDAEFVEAMAIHEGVEIALTLGFKRVEVESDALRVIHLLQNQANDLSEV 60
           M  +SK IS    A+ VEAMA  EG+  A  LGF+ V +E D+++VI    ++  DL  V
Sbjct: 230 MAAMSKRISIHYSAKVVEAMAAREGLNFARVLGFQHVLLEGDSIQVIKTSVSKELDLPVV 289

Query: 61  GRIVEETLRLARNFEYIDFSWIGRDANRLAHNLAQFA 98
           G + E+   L  +F+   FS++ RD N++ H+LAQ+A
Sbjct: 290 GAVTEDVKVLMCHFKECTFSFVKRDGNKVTHSLAQYA 326

[Close]

BLAST of Sed0009635 vs. NCBI nr
Match: PRQ34202.1 (putative ribonuclease H-like domain-containing protein [Rosa chinensis])

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 7   PISGGVDAEFVEAMAIHEGVEIALTLGFKRVEVESDALRVIHLLQNQANDLSEVGRIVEE 66
           P  G +    VEA+A+  G+  A  +GF R+E+E DAL +I  LQ + +DLS  G ++EE
Sbjct: 34  PQIGYLSPRSVEALALLHGLRFAAHVGFGRLEIEGDALSIITSLQVECDDLSLEGHLLEE 93

Query: 67  TLRLARNFEYIDFSWIGRDANRLAHNLAQFA 98
             RL  +FE+    ++ R+ N++AH LA+ A
Sbjct: 94  VKRLVESFEFCSSHFVKREGNQVAHRLAKEA 124

[Close]

BLAST of Sed0009635 vs. ExPASy TrEMBL
Match: A0A2P6QT88 (Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0402201 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.3e-09
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 7   PISGGVDAEFVEAMAIHEGVEIALTLGFKRVEVESDALRVIHLLQNQANDLSEVGRIVEE 66
           P +  +    VEA+A+ EG+  +  LG + +EVE DAL +I+ L    NDL+E+G ++E 
Sbjct: 466 PFAATLKPSAVEALALQEGLRYSRLLGIRNLEVEGDALCIINSLSQTENDLTEIGAVLEG 525

Query: 67  TLRLARNFEYIDFSWIGRDANRLAHNLAQFA 98
              L + FE++++  + + AN++AH LA+ A
Sbjct: 526 VRLLLQEFEFVNWKHVRKKANQVAHELARSA 556

[Close]

BLAST of Sed0009635 vs. ExPASy TrEMBL
Match: A0A2P6QJ46 (Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0066251 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.2e-09
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 7   PISGGVDAEFVEAMAIHEGVEIALTLGFKRVEVESDALRVIHLLQNQANDLSEVGRIVEE 66
           P  G +    VEA+A+  G+  A  +GF R+E+E DAL +I  LQ + +DLS  G ++EE
Sbjct: 34  PQIGYLSPRSVEALALLHGLRFAAHVGFGRLEIEGDALSIITSLQVECDDLSLEGHLLEE 93

Query: 67  TLRLARNFEYIDFSWIGRDANRLAHNLAQFA 98
             RL  +FE+    ++ R+ N++AH LA+ A
Sbjct: 94  VKRLVESFEFCSSHFVKREGNQVAHRLAKEA 124

[Close]

BLAST of Sed0009635 vs. ExPASy TrEMBL
Match: A0A7J8MZR8 (RNase H domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_003863 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 13 DAEFVEAMAIHEGVEIALTLGFKRVEVESDALRVIHLLQNQANDLSEVGRIVEETLRLAR 72
          DA F+EA+   +G+++ L LGF++VEVE D++ VI  LQNQ  D+S +   +E+    +R
Sbjct: 14 DASFLEAIRCLQGIQMRLDLGFRKVEVEEDSINVIKKLQNQKEDMSMIRDYIEDARIESR 73

Query: 73 NFEYIDFSWIGRDANRLAH 92
          +FE   F ++GR+AN  A+
Sbjct: 74 DFEECMFRYVGRNANETAN 92

[Close]

BLAST of Sed0009635 vs. ExPASy TrEMBL
Match: M7ZRA5 (RNase H domain-containing protein OS=Triticum urartu OX=4572 GN=TRIUR3_23389 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 18  EAMAIHEGVEIALTLGFKRVEVESDALRVIHLLQNQANDLSEVGRIVEETLRLARNFEYI 77
           EA AI +G ++A  LG+++V +E+DA  V+ L  +  ND SE+  I++E   L RNFE  
Sbjct: 454 EAYAIRDGAQLAFDLGYRKVHMETDAQIVLKLWYSPENDRSEIATIIKEIQELCRNFEEF 513

Query: 78  DFSWIGRDANRLAHNLAQ 96
             S+I R+AN LAH  A+
Sbjct: 514 RLSFISREANELAHLCAK 531

[Close]

BLAST of Sed0009635 vs. ExPASy TrEMBL
Match: A0A7J9CHG1 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_004472 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.1e-08
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 18  EAMAIHEGVEIALTLGFKRVEVESDALRVIHLLQNQANDLSEVGRIVEETLRLARNFEYI 77
           EA+A  +GV++ L LGF  V +E D+L V+  LQN+  D+SE+  I+E+  R +R F   
Sbjct: 263 EAIACLQGVQMGLDLGFHGVILEGDSLTVVKKLQNKNKDISEINPIIEDVKRASRGFVEC 322

Query: 78  DFSWIGRDANRLAHNLAQFAAVELE 103
            F+++GR+ N  AH LA+   V  E
Sbjct: 323 RFNFVGRNTNGTAHRLAKEGLVNGE 347

The following BLAST results are available for this feature:

BLAST of Sed0009635 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7821986.1	6.2e-11	40.43	putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c...	[more]
KAF7822031.1	5.3e-10	39.36	putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c...	[more]
PRQ37402.1	1.3e-08	36.26	putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c...	[more]
KAF8399913.1	1.3e-08	40.21	hypothetical protein HHK36_015783 [Tetracentron sinense]	[more]
PRQ34202.1	1.7e-08	39.56	putative ribonuclease H-like domain-containing protein [Rosa chinensis]	[more]

BLAST of Sed0009635 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0009635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P6QT88	6.3e-09	36.26	Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c...	[more]
A0A2P6QJ46	8.2e-09	39.56	Putative ribonuclease H-like domain-containing protein OS=Rosa chinensis OX=7464...	[more]
A0A7J8MZR8	1.4e-08	41.77	RNase H domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_003863 ...	[more]
M7ZRA5	2.4e-08	43.59	RNase H domain-containing protein OS=Triticum urartu OX=4572 GN=TRIUR3_23389 PE=...	[more]
A0A7J9CHG1	4.1e-08	41.18	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_004472 PE=4 ...	[more]

BLAST of Sed0009635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..97 e-value: 7.9E-21 score: 74.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 3..102 e-value: 1.2E-11 score: 46.7
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 16..100
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 18..94 e-value: 3.73409E-17 score: 68.88
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 9..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009635.1	Sed0009635.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity