Sed0009578 (gene) Chayote v1

Overview
NameSed0009578
Typegene
OrganismSechium edule (Chayote v1)
Descriptionphotosystem II repair protein PSB27-H1, chloroplastic-like
LocationLG04: 43592671 .. 43593617 (+)
RNA-Seq ExpressionSed0009578
SyntenySed0009578
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAAATAAGATAAGATGATAAGTACACGTGTCAAATACCCAATTCCCCAAATCCATCACTAAAAATCACTCATTTTCACAATTCCAATTCCCCCAAAATCATGGCCTCATCAACAACGCTGATAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCCATCAAACCCAAATCCACCGTTTCCGCCGCCGCCGTCAACAATCCCCGCCGCCGCCGTGAGTTCCTGTCCTTAACCGCCTCTGTTCTTGCAACGCCGTGGATCCTGTTCCCGCCGGCGCCGGCGCAAGCCTCGGACGACGAGGAGTACGTGAAGGACACCAATGTGGTGATAAACAAGGTTAGAACGACGATCAACATGGAGAGAAGCGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAATACAGGAAGGAGAAGTCTCTGTTGGGGCGAGCTTCGTTTAGGGATATGTATTCGGCTCTCAATGCGGTTTCGGGCCATTACATTAGCTTTGGCCCGACCACGCCGATCCCGGCCAAGAGGAAGGTTAGGATTTTGGAAGAGATGGACACTGCTGAGAAATCTCTGTTGAGAGGGAGATGAGAATTATGTGAGACATTTTTAATTATTGCCATTTTTTTAAAATTTAAAATTTATGGTTTTTCTGTGTATGTTTTTGTTTTTGTGACTAAGTATAGTGTATGGGGTTCACAATTTGTGAATTTACTAGAGGGGAAGATACTAAAACTCGGTGATAAATGCTTTGAGAGATTAATACATTGTAAGATTTTCTCCTAATATTGACTCTATATTTGTGTATTAGGCTAAATTATAAATTTTATCGTATGATTGATAAAAGTTAGAAATTAGTGTTATTGATTTATAGATGGCAACCCAGTTTCAATGCTTTAATAAAATATTGTTTGTAAGGCGAA

mRNA sequence

CAACAAATAAGATAAGATGATAAGTACACGTGTCAAATACCCAATTCCCCAAATCCATCACTAAAAATCACTCATTTTCACAATTCCAATTCCCCCAAAATCATGGCCTCATCAACAACGCTGATAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCCATCAAACCCAAATCCACCGTTTCCGCCGCCGCCGTCAACAATCCCCGCCGCCGCCGTGAGTTCCTGTCCTTAACCGCCTCTGTTCTTGCAACGCCGTGGATCCTGTTCCCGCCGGCGCCGGCGCAAGCCTCGGACGACGAGGAGTACGTGAAGGACACCAATGTGGTGATAAACAAGGTTAGAACGACGATCAACATGGAGAGAAGCGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAATACAGGAAGGAGAAGTCTCTGTTGGGGCGAGCTTCGTTTAGGGATATGTATTCGGCTCTCAATGCGGTTTCGGGCCATTACATTAGCTTTGGCCCGACCACGCCGATCCCGGCCAAGAGGAAGGTTAGGATTTTGGAAGAGATGGACACTGCTGAGAAATCTCTGTTGAGAGGGAGATGAGAATTATGTGAGACATTTTTAATTATTGCCATTTTTTTAAAATTTAAAATTTATGGTTTTTCTGTGTATGTTTTTGTTTTTGTGACTAAGTATAGTGTATGGGGTTCACAATTTGTGAATTTACTAGAGGGGAAGATACTAAAACTCGGTGATAAATGCTTTGAGAGATTAATACATTGTAAGATTTTCTCCTAATATTGACTCTATATTTGTGTATTAGGCTAAATTATAAATTTTATCGTATGATTGATAAAAGTTAGAAATTAGTGTTATTGATTTATAGATGGCAACCCAGTTTCAATGCTTTAATAAAATATTGTTTGTAAGGCGAA

Coding sequence (CDS)

ATGGCCTCATCAACAACGCTGATAACTCCCTGTACCTCCAAATCTCAGCCTCTCATCATCCCCATCAAACCCAAATCCACCGTTTCCGCCGCCGCCGTCAACAATCCCCGCCGCCGCCGTGAGTTCCTGTCCTTAACCGCCTCTGTTCTTGCAACGCCGTGGATCCTGTTCCCGCCGGCGCCGGCGCAAGCCTCGGACGACGAGGAGTACGTGAAGGACACCAATGTGGTGATAAACAAGGTTAGAACGACGATCAACATGGAGAGAAGCGACCCGAATGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAATTCTTGGGTGGCGAAATACAGGAAGGAGAAGTCTCTGTTGGGGCGAGCTTCGTTTAGGGATATGTATTCGGCTCTCAATGCGGTTTCGGGCCATTACATTAGCTTTGGCCCGACCACGCCGATCCCGGCCAAGAGGAAGGTTAGGATTTTGGAAGAGATGGACACTGCTGAGAAATCTCTGTTGAGAGGGAGATGA

Protein sequence

MASSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKEKSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR
Homology
[Close]
BLAST of Sed0009578 vs. NCBI nr
Match: XP_023529218.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-71
Identity = 144/168 (85.71%), Postives = 156/168 (92.86%), Query Frame = 0 

Query: 3   SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPA 62
           +S TL+TPCTSKSQPLIIP KPKST+SAAAV++P RRRE LSLTASVLA PW+L PPAPA
Sbjct: 2   ASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHHP-RRRELLSLTASVLAAPWVLLPPAPA 61

Query: 63  QASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKEKSLLGRA 122
           QAS+DEEYVKDTN VINKVRTTI M+++DPNVA AVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 62  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 121

Query: 123 SFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           SFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEK+L RGR
Sbjct: 122 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]
BLAST of Sed0009578 vs. NCBI nr
Match: KAG6589210.1 (Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022910.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.7 bits (709), Expect = 6.6e-71
Identity = 143/168 (85.12%), Postives = 156/168 (92.86%), Query Frame = 0 

Query: 3   SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPA 62
           +S TL+TPCTSKSQPLIIP KPKST+SAAAV++ RRRRE LSLTASVLA PW+L PPAPA
Sbjct: 2   ASRTLLTPCTSKSQPLIIPPKPKSTISAAAVHH-RRRRELLSLTASVLAAPWVLLPPAPA 61

Query: 63  QASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKEKSLLGRA 122
           QAS+DEEYVKDTN VINKVRTTI M+++DPNVA AVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 62  QASNDEEYVKDTNEVINKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 121

Query: 123 SFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           SFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEM+TAEK+L RGR
Sbjct: 122 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]
BLAST of Sed0009578 vs. NCBI nr
Match: XP_022930794.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-70
Identity = 141/168 (83.93%), Postives = 156/168 (92.86%), Query Frame = 0 

Query: 3   SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPA 62
           +S TL+TPCTSKSQPLIIP KPKST+SAAA+++P RRRE LSLTASVLA PW+L PPAPA
Sbjct: 2   ASRTLLTPCTSKSQPLIIPPKPKSTISAAAIHHP-RRRELLSLTASVLAAPWVLLPPAPA 61

Query: 63  QASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKEKSLLGRA 122
           QAS+DEEYVKDTN VI+KVRTTI M+++DPNVA AVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 62  QASNDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 121

Query: 123 SFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           SFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEM+TAEK+L RGR
Sbjct: 122 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]
BLAST of Sed0009578 vs. NCBI nr
Match: XP_022988975.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-70
Identity = 142/168 (84.52%), Postives = 155/168 (92.26%), Query Frame = 0 

Query: 3   SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPA 62
           +S  L+TPCTSKSQPLIIP KPKST+SAAAV++P RRRE LSLTASVLA PW+L PPAPA
Sbjct: 2   ASRALLTPCTSKSQPLIIPPKPKSTISAAAVHHP-RRRELLSLTASVLAAPWVLLPPAPA 61

Query: 63  QASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKEKSLLGRA 122
           QAS+DEEYVKDTN VI+KVRTTI M+++DPNVA AVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 62  QASNDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 121

Query: 123 SFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           SFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEK+L RGR
Sbjct: 122 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]
BLAST of Sed0009578 vs. NCBI nr
Match: XP_022952622.1 (photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] >XP_022969270.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 2.0e-67
Identity = 141/171 (82.46%), Postives = 150/171 (87.72%), Query Frame = 0 

Query: 3   SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPR---RRREFLSLTASVLATPWILFPP 62
           +S TLITP TSKSQPLIIP+KPKS++SAAA        RRREFLSLTASVLA  W+LFPP
Sbjct: 2   ASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFPP 61

Query: 63  APAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKEKSLL 122
           APA AS DEEYVKDT  VI KVRTTI M+++DPNVAAAVAELRESSNSWVAKYRKEKSLL
Sbjct: 62  APALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSLL 121

Query: 123 GRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           GRASFRDMYSALNAVSGHYISFGPT PIPAKRK RILEEM TAEK+LLRGR
Sbjct: 122 GRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of Sed0009578 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.3e-48
Identity = 111/175 (63.43%), Postives = 137/175 (78.29%), Query Frame = 0 

Query: 2   ASSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRR----RREFLSLTA-SVLATPWIL 61
           +++ TL+ P     +P II     S+VS   +  PRR    RR+FLSL A S L T  I 
Sbjct: 5   SATATLLKPNLPPHKPTII----ASSVS-PPLPPPRRNHLLRRDFLSLAATSTLLTQSIQ 64

Query: 62  F-PPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKE 121
           F  PAP  A++DEEY+KDT+ VI+KVR+T++M+++DPNVA AVAELRE+SNSWVAKYRKE
Sbjct: 65  FLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKE 124

Query: 122 KSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           K+LLG+ASFRD+YSALNAVSGHY+SFGPT PIPAKRK RILEEM+TAEK+L RGR
Sbjct: 125 KALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

[Close]
BLAST of Sed0009578 vs. ExPASy TrEMBL
Match: A0A6J1JL33 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486175 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.3e-71
Identity = 142/168 (84.52%), Postives = 155/168 (92.26%), Query Frame = 0 

Query: 3   SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPA 62
           +S  L+TPCTSKSQPLIIP KPKST+SAAAV++P RRRE LSLTASVLA PW+L PPAPA
Sbjct: 2   ASRALLTPCTSKSQPLIIPPKPKSTISAAAVHHP-RRRELLSLTASVLAAPWVLLPPAPA 61

Query: 63  QASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKEKSLLGRA 122
           QAS+DEEYVKDTN VI+KVRTTI M+++DPNVA AVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 62  QASNDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 121

Query: 123 SFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           SFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEMDTAEK+L RGR
Sbjct: 122 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMDTAEKALSRGR 168

[Close]
BLAST of Sed0009578 vs. ExPASy TrEMBL
Match: A0A6J1ESI1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111437168 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.3e-71
Identity = 141/168 (83.93%), Postives = 156/168 (92.86%), Query Frame = 0 

Query: 3   SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPA 62
           +S TL+TPCTSKSQPLIIP KPKST+SAAA+++P RRRE LSLTASVLA PW+L PPAPA
Sbjct: 2   ASRTLLTPCTSKSQPLIIPPKPKSTISAAAIHHP-RRRELLSLTASVLAAPWVLLPPAPA 61

Query: 63  QASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKEKSLLGRA 122
           QAS+DEEYVKDTN VI+KVRTTI M+++DPNVA AVAELRESSNSWVAKYRKEKSLLGRA
Sbjct: 62  QASNDEEYVKDTNEVISKVRTTIKMDKNDPNVAEAVAELRESSNSWVAKYRKEKSLLGRA 121

Query: 123 SFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           SFRDMYSALNAVSGHY+SFGPT PIPAKRK RILEEM+TAEK+L RGR
Sbjct: 122 SFRDMYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALSRGR 168

[Close]
BLAST of Sed0009578 vs. ExPASy TrEMBL
Match: A0A6J1HZH1 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468326 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 9.7e-68
Identity = 141/171 (82.46%), Postives = 150/171 (87.72%), Query Frame = 0 

Query: 3   SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPR---RRREFLSLTASVLATPWILFPP 62
           +S TLITP TSKSQPLIIP+KPKS++SAAA        RRREFLSLTASVLA  W+LFPP
Sbjct: 2   ASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFPP 61

Query: 63  APAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKEKSLL 122
           APA AS DEEYVKDT  VI KVRTTI M+++DPNVAAAVAELRESSNSWVAKYRKEKSLL
Sbjct: 62  APALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSLL 121

Query: 123 GRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           GRASFRDMYSALNAVSGHYISFGPT PIPAKRK RILEEM TAEK+LLRGR
Sbjct: 122 GRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of Sed0009578 vs. ExPASy TrEMBL
Match: A0A6J1GKW7 (photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455256 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 9.7e-68
Identity = 141/171 (82.46%), Postives = 150/171 (87.72%), Query Frame = 0 

Query: 3   SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPR---RRREFLSLTASVLATPWILFPP 62
           +S TLITP TSKSQPLIIP+KPKS++SAAA        RRREFLSLTASVLA  W+LFPP
Sbjct: 2   ASPTLITPSTSKSQPLIIPLKPKSSISAAATTTTHHYSRRREFLSLTASVLAPSWVLFPP 61

Query: 63  APAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKEKSLL 122
           APA AS DEEYVKDT  VI KVRTTI M+++DPNVAAAVAELRESSNSWVAKYRKEKSLL
Sbjct: 62  APALASSDEEYVKDTTEVIGKVRTTITMDKNDPNVAAAVAELRESSNSWVAKYRKEKSLL 121

Query: 123 GRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           GRASFRDMYSALNAVSGHYISFGPT PIPAKRK RILEEM TAEK+LLRGR
Sbjct: 122 GRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMATAEKALLRGR 172

[Close]
BLAST of Sed0009578 vs. ExPASy TrEMBL
Match: A0A0A0K1S2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.4e-65
Identity = 134/168 (79.76%), Postives = 147/168 (87.50%), Query Frame = 0 

Query: 3   SSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRRRREFLSLTASVLATPWILFPPAPA 62
           +S TLITPCTSKSQ   IP+KPKST+SAA      RRREFLSLTASVLA  ++LFP +PA
Sbjct: 2   ASPTLITPCTSKSQSPFIPLKPKSTISAAVTTPTVRRREFLSLTASVLAPSFVLFPQSPA 61

Query: 63  QASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKEKSLLGRA 122
            A+ D+EYVKDTN VI KVRTTI M+R+DPNVAAAVA+LRESSN WVAKYRKEK+LLGRA
Sbjct: 62  LAASDDEYVKDTNEVIGKVRTTITMDRNDPNVAAAVADLRESSNFWVAKYRKEKALLGRA 121

Query: 123 SFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           SFRDMYSALNAVSGHYISFGPT PIPAKRK RILEEMDTAEK+LLRGR
Sbjct: 122 SFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR 169

[Close]
BLAST of Sed0009578 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 194.1 bits (492), Expect = 9.0e-50
Identity = 111/175 (63.43%), Postives = 137/175 (78.29%), Query Frame = 0 

Query: 2   ASSTTLITPCTSKSQPLIIPIKPKSTVSAAAVNNPRR----RREFLSLTA-SVLATPWIL 61
           +++ TL+ P     +P II     S+VS   +  PRR    RR+FLSL A S L T  I 
Sbjct: 5   SATATLLKPNLPPHKPTII----ASSVS-PPLPPPRRNHLLRRDFLSLAATSTLLTQSIQ 64

Query: 62  F-PPAPAQASDDEEYVKDTNVVINKVRTTINMERSDPNVAAAVAELRESSNSWVAKYRKE 121
           F  PAP  A++DEEY+KDT+ VI+KVR+T++M+++DPNVA AVAELRE+SNSWVAKYRKE
Sbjct: 65  FLAPAPVSAAEDEEYIKDTSAVISKVRSTLSMQKTDPNVADAVAELREASNSWVAKYRKE 124

Query: 122 KSLLGRASFRDMYSALNAVSGHYISFGPTTPIPAKRKVRILEEMDTAEKSLLRGR 171
           K+LLG+ASFRD+YSALNAVSGHY+SFGPT PIPAKRK RILEEM+TAEK+L RGR
Sbjct: 125 KALLGKASFRDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKALTRGR 174

The following BLAST results are available for this feature:
BLAST of Sed0009578 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023529218.11.3e-7185.71photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp... [more]
KAG6589210.16.6e-7185.12Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyro... [more]
XP_022930794.11.9e-7083.93photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata][more]
XP_022988975.11.9e-7084.52photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima][more]
XP_022952622.12.0e-6782.46photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata] ... [more]
BLAST of Sed0009578 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LR641.3e-4863.43Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX... [more]
BLAST of Sed0009578 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JL339.3e-7184.52photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O... [more]
A0A6J1ESI19.3e-7183.93photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata... [more]
A0A6J1HZH19.7e-6882.46photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita maxima O... [more]
A0A6J1GKW79.7e-6882.46photosystem II repair protein PSB27-H1, chloroplastic-like OS=Cucurbita moschata... [more]
A0A0A0K1S23.4e-6579.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047350 PE=3 SV=1[more]
BLAST of Sed0009578 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03600.19.0e-5063.43photosystem II family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025585Photosystem II Pbs27PFAMPF13326PSII_Pbs27coord: 53..166
e-value: 1.0E-30
score: 106.9
IPR025585Photosystem II Pbs27PANTHERPTHR34041PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..170
IPR025585Photosystem II Pbs27HAMAPMF_01481PSII_Psb27coord: 44..166
score: 22.579296
IPR038450Photosystem II Pbs27 superfamilyGENE3D1.20.58.810Photosystem II Pbs27coord: 65..170
e-value: 1.8E-38
score: 133.2
NoneNo IPR availablePANTHERPTHR34041:SF1PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTICcoord: 1..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009578.1Sed0009578.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071484 cellular response to light intensity
biological_process GO:0010207 photosystem II assembly
biological_process GO:0010206 photosystem II repair
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009523 photosystem II