Sed0009441 (gene) Chayote v1

Overview


Name	Sed0009441
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein DCL, chloroplastic
Location	LG01: 21552754 .. 21556473 (+)
RNA-Seq Expression	Sed0009441
Synteny	Sed0009441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACAAAATCAGCCCAAAACGCCCAATAACTGATCATCATCCCTAATGAGCTGATCTGCACAAGGCACATGAACATTTGATCCTCATGGCTGCTTCTTTCATACGCAGGGGGCATTCTCTTCTCCGGTTAGGGTTCCGGCCAAGCGGGCTATGTACTGGAATCGTGCAGGTGGCTGGCCGGTCTTTGTGTACTGCGACGGCGGCGTCTACTCCACCGGACGGCGACTTAACATCTGCTGAAAATACTACCTCGCCGTTGAGTGCCAGTGAGCCACCGAAGTATCAAACGCGGCACGATGCTGATCATCGAAAGTGGAAGGATCAGGAAAAGGAAATTCTCAGCGACATCGAGCCTATCATCTCTCTCACTAGAGAAATCCTTCGTTCCGAAAGGTTTGTCCTGTTATCGCAATGTTAACCCCCAGAGTTTCTTATTTAAATTTTAGGAGTTATGAATTGTTTTGTTTGTTTCTGAGGAACTTAGCAAGAAAAAAAGGAAGGAAATCCAAAGCGTGGATTGGAGAAAACCCTTTTGTTCGATTGAAATGCACACTTAGTCATATAGAACATATTTTTAATTAGAACTTAGTGAGAAATTTCATTTTTATGTAAACCAAAACATTTCTGTCCAAGAAATATCCAGAGTACCTTAACTGCTTTATGATATATTGCTCTTGTTTTTTGTTCTGAAATCGGATCGACGATCAAAGTACAACAGTTAAGAAGGTGGGACGAAACATGATGATTTACATGTTTTACTATTAGTGTGTTAACTCCTTCCTGCTGATGAGAGAATATTTAATTAATTTGGACATACAGAATGCAAAATGTTGACTAAAGTGGGGTTAGGATTTTAAGAGTGTCTAATTTTTATTACACCACATGACCCAAAACATACAAAGTCCAATACGAAAATATAAACGATACCCCCGCCTAAGTAGTTGTTGGGTATCATAGTTCAAATTCATCTCAACATTTTTTGTTTTATGATCACACTTTTCTCCTAGGATATTATGCCCCTTCTCTTAAGGACCTCATTTTTATTCCAGGTACGTGAATGGGGAGCGATTGACATTGGAAGACGAGAGAATTGTTGCTGACAGGCTTCTAGTTCATCATCCACAAGCTGAAGATAAAATCGGATGTGGACTTGAATCTATTATGGTATGCTTTGGTCTGGACTACATGGTCTAGAGTTCTTACTATGTTTCAAATATGCAGTTTGCTTGCTCTTTTTGTTAGGTCATATAGAAATGACATTTGGTATATGAAAATTTTCAGAGGCTCAAAATATGACTGGTGACCTCTTACCTACACTTAGAGCAAGGCCTGTGTCGTACAAGAATTAATTTCTAACAAATTCACACTGACCTTGTGTGATAGGACCTTAGAAAGTAGAAGTCTAAACGTGCTGCAGTTACATGGACTCCAGGCTTGTGAGCCCTATGAACCTTATGAAATAAATCTAGCCCTGAAAAAAAGAACGGGATGATAGGATTTAAGCTGATATAGCCTTGAGATAAGAAAGGATTACAAAGTCGGGGAAGAAAATTGAGATCCCTCCCCTGCAAGCTACATTGAATCTGATGTGAAAGTCAACAAATTCTTCTTTTCTTAACAACATTAAATCTGCCTTGCAAGCATTCCATCAAAGAAAGGATTGGCAGAAGCTTCTAGCTTCACGTCTCAATCGTTACCATAATATTTGCCCACCCCTCCCTGAATAACCACCGATCTAACAAACTTTGTAGCTAATAGCTAATTTACCCCTAATTACACTTGTTGCACTCTTTCTCAAGTTTCCCAATGGCATCATCATTTGTAGGTATTGATTGATGATTCTTATTGTAATATTCATTGATCAATGAAAGTCATTGTTTCCTATAAAAAAAACTCTTCCTCAAGTTGCTGCCTGTGTGATCAAGTAATGGCCTCCAATTGTCACCCAGCTTCTTGCCAATAATACAATTGAAGTGTGCTTGAAGCCAGCAAGCAATTTCATATTAAAAGGAGCTCAGAGTCTCAGTCCATACTAATACTGAAGCTTCTCTGATTAATATTTTGGATATATGCCATGTGGTGCTTGCTTGTAGCCTTGTACATTGAAAATCTGTGGGGGCTATTATGCTCTCTGTGTCTGTTTGTACTTTGTACAGAAGAGGTATAACACAGTATAAAGTTATTAGACTCTGTGGCTATCTTTTTGTATTGCTCAACTATAATCATGAGCCAACATTAAAATAGGAGGTTGCTACATGAGGGCAGCACCTTGCGTATGATAGAATAACTCTGTGGCGCATGGCCATGCTTGGCTCTTTCTATCGGTTGTCTTCTTTTGCTTTGGTTTCTGGATAATTGTATGTCTTGGCCAGGCTCCCTGGTTTGTTATATAATCCATTTCCAAACTTAACCGTTGAAAATTGCAAGACACAATTTTCTTTTACCCATGACATTTTACTTTCATTGTCTAGCCAAGCAAAAGCATCTTGTTCTTTTTGCACGTCACTCTGTGAGACCTCCAATTCAGAAGGTTTATTCAGGGAAGGGAAAAGCCAGAAATATGTTATTTCTAACATTTAGAAATATCAGTGTTAGTCTCTTTATTTAGTATTTTGATTAGGGAGTTATAACTTCTTTAGTCAGCTATGTTCCTTTTGATGGTCTGTTTATATGTCGTTTTTTTGGAAGGACTTAAAGGAATGGGGAGAGATTGATGACCCTCTCAATCTAGTCATTAGGAGATCAGTTGTTTGTTATATTTCTGTGAAAAGAAAGGGAATTTTTGACATCATCAAAGCTTACATATGTACTGTCTATTAGAGTTATTTGATGTTTACCCAGCTTGAAACCATCGTTTTTATTTTTTAAGATTATTTATGCTTTTTTTTTTTGCTGCTGAAGGTCAACCGGCACCCCCAGTTTCGGTGTTCAACCTGCCTCTTTGTTATAAGGACTGATGGCTCATGGATTGACTTCTCGTATCTAATGTGTCTTCGAGGTTATATCCGAAATAAATACCCATCATATGCAGAGCGGTTTATTGAAAAGCATTTCAAACGCAGGATATTTGTTTGAATGATTAAAAGCGTTCTTCATGGTTCGGTGGCCTACATGAAGGCAAGATGGATGTTGAATGCAGTGGAGAATGAGAACAATCGACAACCAGTAAAGTGGACTTTCTGTTTATTAACTTGCAGTTCTGTTTTGTTTGTGTTCTAGATTTCTGGATAATCGGATAAGTGCAGGAATGTAGAACGAGATTATTGATCATGTTTGAAAAGTAATGTAGTATTGAAAAGCTTAAACTGATTTATTTAATCTATTCTTTTTCACTTTTTACCATCTGCTTATCTAGATCTTGCGCGTGTTCTAATGTTGTTCATGATGAACCAACCAAGAGAAGTAATCAAACTTCAGGGGCATGAGCAGGTTGAATGGTCGATGATTGCAGCTGTAGAACTGTGGTGGCAAAATGAAGGCTTAAAGCGCATTTTGTGGGATTAGCCAATAAAGAAATTTTCAAATGAAAATTGATTGAAGAGTTTGATTTTGTGCAATGGTAATTGATTTGCTTGTTTATGTTGGTTTCAAGGATTAGTTTTTTTTTCAGTTCAATGTTATTTTGGGGGTGATTAGATTTTGTTGTCGAAAAGAGGAGATGAGAGAAAGTCGAAGAGGAAGAAGTGGAGTGATTTGGAGATTGATGTTTTAGAGAGAAG

mRNA sequence

CCAACAAAATCAGCCCAAAACGCCCAATAACTGATCATCATCCCTAATGAGCTGATCTGCACAAGGCACATGAACATTTGATCCTCATGGCTGCTTCTTTCATACGCAGGGGGCATTCTCTTCTCCGGTTAGGGTTCCGGCCAAGCGGGCTATGTACTGGAATCGTGCAGGTGGCTGGCCGGTCTTTGTGTACTGCGACGGCGGCGTCTACTCCACCGGACGGCGACTTAACATCTGCTGAAAATACTACCTCGCCGTTGAGTGCCAGTGAGCCACCGAAGTATCAAACGCGGCACGATGCTGATCATCGAAAGTGGAAGGATCAGGAAAAGGAAATTCTCAGCGACATCGAGCCTATCATCTCTCTCACTAGAGAAATCCTTCGTTCCGAAAGGTACGTGAATGGGGAGCGATTGACATTGGAAGACGAGAGAATTGTTGCTGACAGGCTTCTAGTTCATCATCCACAAGCTGAAGATAAAATCGGATGTGGACTTGAATCTATTATGGTCAACCGGCACCCCCAGTTTCGGTGTTCAACCTGCCTCTTTGTTATAAGGACTGATGGCTCATGGATTGACTTCTCGTATCTAATGTGTCTTCGAGGTTATATCCGAAATAAATACCCATCATATGCAGAGCGGTTTATTGAAAAGCATTTCAAACGCAGGATATTTGTTTGAATGATTAAAAGCGTTCTTCATGGTTCGGTGGCCTACATGAAGGCAAGATGGATGTTGAATGCAGTGGAGAATGAGAACAATCGACAACCAGTAAAGTGGACTTTCTGTTTATTAACTTGCAGTTCTGTTTTGTTTGTGTTCTAGATTTCTGGATAATCGGATAAGTGCAGGAATGTAGAACGAGATTATTGATCATGTTTGAAAAGTAATGTAGTATTGAAAAGCTTAAACTGATTTATTTAATCTATTCTTTTTCACTTTTTACCATCTGCTTATCTAGATCTTGCGCGTGTTCTAATGTTGTTCATGATGAACCAACCAAGAGAAGTAATCAAACTTCAGGGGCATGAGCAGGTTGAATGGTCGATGATTGCAGCTGTAGAACTGTGGTGGCAAAATGAAGGCTTAAAGCGCATTTTGTGGGATTAGCCAATAAAGAAATTTTCAAATGAAAATTGATTGAAGAGTTTGATTTTGTGCAATGGTAATTGATTTGCTTGTTTATGTTGGTTTCAAGGATTAGTTTTTTTTTCAGTTCAATGTTATTTTGGGGGTGATTAGATTTTGTTGTCGAAAAGAGGAGATGAGAGAAAGTCGAAGAGGAAGAAGTGGAGTGATTTGGAGATTGATGTTTTAGAGAGAAG

Coding sequence (CDS)

ATGGCTGCTTCTTTCATACGCAGGGGGCATTCTCTTCTCCGGTTAGGGTTCCGGCCAAGCGGGCTATGTACTGGAATCGTGCAGGTGGCTGGCCGGTCTTTGTGTACTGCGACGGCGGCGTCTACTCCACCGGACGGCGACTTAACATCTGCTGAAAATACTACCTCGCCGTTGAGTGCCAGTGAGCCACCGAAGTATCAAACGCGGCACGATGCTGATCATCGAAAGTGGAAGGATCAGGAAAAGGAAATTCTCAGCGACATCGAGCCTATCATCTCTCTCACTAGAGAAATCCTTCGTTCCGAAAGGTACGTGAATGGGGAGCGATTGACATTGGAAGACGAGAGAATTGTTGCTGACAGGCTTCTAGTTCATCATCCACAAGCTGAAGATAAAATCGGATGTGGACTTGAATCTATTATGGTCAACCGGCACCCCCAGTTTCGGTGTTCAACCTGCCTCTTTGTTATAAGGACTGATGGCTCATGGATTGACTTCTCGTATCTAATGTGTCTTCGAGGTTATATCCGAAATAAATACCCATCATATGCAGAGCGGTTTATTGAAAAGCATTTCAAACGCAGGATATTTGTTTGA

Protein sequence

MAASFIRRGHSLLRLGFRPSGLCTGIVQVAGRSLCTATAASTPPDGDLTSAENTTSPLSASEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVADRLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKYPSYAERFIEKHFKRRIFV

Homology

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BLAST of Sed0009441 vs. NCBI nr
Match: XP_022135338.1 (protein DCL, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 299.7 bits (766), Expect = 1.9e-77
Identity = 149/194 (76.80%), Postives = 163/194 (84.02%), Query Frame = 0


Query: 1   MAASFIRRGHSLLRLGFRPSGLCTGIVQVAGRSLCTATAASTPPDGDLTSAENTTSPLSA 60
           MAAS + RGH LLRLG R  GLCTGIVQV  RS CTATAA TPPDG+LTSAEN TS LS+
Sbjct: 1   MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTATAAPTPPDGNLTSAENITSVLSS 60

Query: 61  SEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVAD 120
           S+PPKY    + D+RKWKDQE+E+L+DIEPIISLT+EIL S RYV+GERLT  DERIV +
Sbjct: 61  SDPPKYSRWDEPDYRKWKDQEEEMLNDIEPIISLTKEILHSNRYVDGERLTSVDERIVVN 120

Query: 121 RLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKY 180
           RLL HHP AEDKIGCGLESIMV+RHPQFR S CLFVIRTDG WIDFSY  CLR YIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAERFIEKHFKR 195
           PSYAERFI +HFKR
Sbjct: 181 PSYAERFIREHFKR 194

[Close]

BLAST of Sed0009441 vs. NCBI nr
Match: XP_008452601.1 (PREDICTED: protein DCL, chloroplastic [Cucumis melo])

HSP 1 Score: 292.7 bits (748), Expect = 2.3e-75
Identity = 143/194 (73.71%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MAASFIRRGHSLLRLGFRPSGLCTGIVQVAGRSLCTATAASTPPDGDLTSAENTTSPLSA 60
           MAASF+ RGH LLRLG +  GLCTG+VQV  RS C+AT ASTP DGDLT+ +N TS +S+
Sbjct: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60

Query: 61  SEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVAD 120
           SEPPKYQ   + D+RKWK+QE+EIL DIEPII LT+EIL S RY +GERLTLEDER V D
Sbjct: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120

Query: 121 RLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKY 180
           RLL HHP AEDKIGCGLESIMV+RHPQFR S C FVIRTDG WIDFSY  CLR YIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAERFIEKHFKR 195
           PS+AERFI +HFKR
Sbjct: 181 PSFAERFIREHFKR 194

[Close]

BLAST of Sed0009441 vs. NCBI nr
Match: KAG7037785.1 (Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.4 bits (747), Expect = 3.0e-75
Identity = 144/194 (74.23%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MAASFIRRGHSLLRLGFRPSGLCTGIVQVAGRSLCTATAASTPPDGDLTSAENTTSPLSA 60
           M AS + RGH L+RLG R  GLCTGIVQV  RS CTA  ASTPP G L+SAENTTS LSA
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCTGIVQVTRRSCCTAMPASTPPGGGLSSAENTTSVLSA 60

Query: 61  SEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVAD 120
           ++PPKYQ   +  +RKWK+QE+EILSDI+P+ISLT+EIL S RYV+GERLT EDE+IV D
Sbjct: 61  TDPPKYQRWDEPGYRKWKNQEEEILSDIDPVISLTKEILHSNRYVDGERLTFEDEKIVVD 120

Query: 121 RLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKY 180
           RLL HHP AEDKIGCGLESIMV+RHPQFR S CLFVIRTDG WIDFSY  CLR YIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAERFIEKHFKR 195
           P YAERFI +HFKR
Sbjct: 181 PLYAERFIREHFKR 194

[Close]

BLAST of Sed0009441 vs. NCBI nr
Match: KAG6608449.1 (Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.4 bits (747), Expect = 3.0e-75
Identity = 144/194 (74.23%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MAASFIRRGHSLLRLGFRPSGLCTGIVQVAGRSLCTATAASTPPDGDLTSAENTTSPLSA 60
           M AS + RGH L+RLG R  GLCTGIVQV  RS CTA  ASTPP G L+SAENTTS LSA
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCTGIVQVTRRSCCTAMPASTPPGGGLSSAENTTSVLSA 60

Query: 61  SEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVAD 120
           ++PPKYQ   +  +RKWK+QE+EILSDI+P+ISLT+EIL S RYV+GERLT EDE+IV D
Sbjct: 61  TDPPKYQRWDEPGYRKWKNQEEEILSDIDPVISLTKEILHSNRYVDGERLTFEDEKIVVD 120

Query: 121 RLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKY 180
           RLL HHP AEDKIGCGLESIMV+RHPQFR S CLFVIRTDG WIDFSY  CLR YIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAERFIEKHFKR 195
           P YAERFI +HFKR
Sbjct: 181 PLYAERFIREHFKR 194

[Close]

BLAST of Sed0009441 vs. NCBI nr
Match: XP_022940238.1 (protein DCL homolog, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 292.0 bits (746), Expect = 4.0e-75
Identity = 144/194 (74.23%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MAASFIRRGHSLLRLGFRPSGLCTGIVQVAGRSLCTATAASTPPDGDLTSAENTTSPLSA 60
           M AS + RGH L+RLG R  GLC GIVQV  RS CTA  ASTPP G L+SAENTTS LSA
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCAGIVQVTRRSCCTAVPASTPPGGGLSSAENTTSVLSA 60

Query: 61  SEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVAD 120
           ++PPKYQ  ++  +RKWK+QE+EILSDI+PIISLT+EIL S RYV+GERLT EDE+IV D
Sbjct: 61  TDPPKYQRWNEPGYRKWKNQEEEILSDIDPIISLTKEILHSNRYVDGERLTFEDEKIVVD 120

Query: 121 RLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKY 180
           RLL HHP AEDKIGCGLESIMV+RHPQFR S CLFVIRTDG WIDFSY  CLR YIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAERFIEKHFKR 195
           P YAERFI +HFKR
Sbjct: 181 PLYAERFIREHFKR 194

[Close]

BLAST of Sed0009441 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-28
Identity = 57/136 (41.91%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 60  ASEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVA 119
           +SE  + +   +++  ++ D E +IL    P++   R IL S +Y N +RL+ E ER + 
Sbjct: 80  SSEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTII 139

Query: 120 DRLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNK 179
           + LL +HP+ E KIGCG++ IMV  HP F  S C+F++R DG  +DFSY  C++G I+ K
Sbjct: 140 EMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKK 199

Query: 180 YPSYAERFIEKHFKRR 196
           YP YA+ FI +HF++R
Sbjct: 200 YPLYADSFILRHFRKR 215

[Close]

BLAST of Sed0009441 vs. ExPASy Swiss-Prot
Match: Q42463 (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25
Identity = 67/182 (36.81%), Postives = 94/182 (51.65%), Query Frame = 0


Query: 31  GRSLCTATAASTPPDGDLTSAEN--------------TTS---PLSASEPPKYQTRHDAD 90
           G  LC   A  T  +G    ++N              TTS    L   E      +   D
Sbjct: 39  GLRLCRCAAVKTGSEGGGIRSDNAELLRKPVISTELETTSESEELVKEESDDEVGKKSGD 98

Query: 91  HRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVADRLLVHHPQAEDKI 150
              W D E +IL D  P++   R IL S +Y  G+RL+ + +R +  RLL +HP+ + KI
Sbjct: 99  GEGWVDWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKI 158

Query: 151 GCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKYPSYAERFIEKHFK 196
           G G++ I V  HP F  S CLF++R DG  +DFSY  C++G IR  YP YA+ FI +HF+
Sbjct: 159 GPGVDYITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFR 218

[Close]

BLAST of Sed0009441 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-21
Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 0


Query: 80   QEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVADRLLVHHPQAEDKIGCGLES 139
            +E+E+LSD+EP++   R+I+    Y +G+ ++ +D+  V +++L  HPQ E K+G G++ 
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 1794

Query: 140  IMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKYPSYAERFIEKHFKR 195
            I V++H  F  S C FV+ TDG+  DFSY   L  Y+  KYP  AE FI+K+F +
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

[Close]

BLAST of Sed0009441 vs. ExPASy Swiss-Prot
Match: Q9LQ02 (DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.5e-04
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 87   DIEPIISLTREILRSERYVNGERLTLEDERIVADRLLVHHPQAEDKIGCGLESIMVNRHP 146
            +IE +    + IL S  Y   E L   DE +V   +L  HP + +KIG G++ I V +  
Sbjct: 1338 NIELLSQSLKRILHS--YEINELLNERDEGLV-KMVLQLHPNSVEKIGPGVKGIRVAK-S 1397

Query: 147  QFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKYPSYAERFIEKHFK 194
            +   S C  V+R DG++ DFSY  C+ G  +   P     +  K+ K
Sbjct: 1398 KHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLK 1440

[Close]

BLAST of Sed0009441 vs. ExPASy TrEMBL
Match: A0A6J1C4J4 (protein DCL, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007322 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 9.2e-78
Identity = 149/194 (76.80%), Postives = 163/194 (84.02%), Query Frame = 0


Query: 1   MAASFIRRGHSLLRLGFRPSGLCTGIVQVAGRSLCTATAASTPPDGDLTSAENTTSPLSA 60
           MAAS + RGH LLRLG R  GLCTGIVQV  RS CTATAA TPPDG+LTSAEN TS LS+
Sbjct: 1   MAASLLLRGHPLLRLGLRHRGLCTGIVQVTRRSCCTATAAPTPPDGNLTSAENITSVLSS 60

Query: 61  SEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVAD 120
           S+PPKY    + D+RKWKDQE+E+L+DIEPIISLT+EIL S RYV+GERLT  DERIV +
Sbjct: 61  SDPPKYSRWDEPDYRKWKDQEEEMLNDIEPIISLTKEILHSNRYVDGERLTSVDERIVVN 120

Query: 121 RLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKY 180
           RLL HHP AEDKIGCGLESIMV+RHPQFR S CLFVIRTDG WIDFSY  CLR YIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAERFIEKHFKR 195
           PSYAERFI +HFKR
Sbjct: 181 PSYAERFIREHFKR 194

[Close]

BLAST of Sed0009441 vs. ExPASy TrEMBL
Match: A0A1S3BU88 (protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493574 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.1e-75
Identity = 143/194 (73.71%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MAASFIRRGHSLLRLGFRPSGLCTGIVQVAGRSLCTATAASTPPDGDLTSAENTTSPLSA 60
           MAASF+ RGH LLRLG +  GLCTG+VQV  RS C+AT ASTP DGDLT+ +N TS +S+
Sbjct: 1   MAASFLFRGHPLLRLGLKRRGLCTGVVQVTRRSCCSATVASTPSDGDLTAGDNATSLVSS 60

Query: 61  SEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVAD 120
           SEPPKYQ   + D+RKWK+QE+EIL DIEPII LT+EIL S RY +GERLTLEDER V D
Sbjct: 61  SEPPKYQRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 120

Query: 121 RLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKY 180
           RLL HHP AEDKIGCGLESIMV+RHPQFR S C FVIRTDG WIDFSY  CLR YIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAERFIEKHFKR 195
           PS+AERFI +HFKR
Sbjct: 181 PSFAERFIREHFKR 194

[Close]

BLAST of Sed0009441 vs. ExPASy TrEMBL
Match: A0A6J1FNQ4 (protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445919 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.9e-75
Identity = 144/194 (74.23%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MAASFIRRGHSLLRLGFRPSGLCTGIVQVAGRSLCTATAASTPPDGDLTSAENTTSPLSA 60
           M AS + RGH L+RLG R  GLC GIVQV  RS CTA  ASTPP G L+SAENTTS LSA
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCAGIVQVTRRSCCTAVPASTPPGGGLSSAENTTSVLSA 60

Query: 61  SEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVAD 120
           ++PPKYQ  ++  +RKWK+QE+EILSDI+PIISLT+EIL S RYV+GERLT EDE+IV D
Sbjct: 61  TDPPKYQRWNEPGYRKWKNQEEEILSDIDPIISLTKEILHSNRYVDGERLTFEDEKIVVD 120

Query: 121 RLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKY 180
           RLL HHP AEDKIGCGLESIMV+RHPQFR S CLFVIRTDG WIDFSY  CLR YIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAERFIEKHFKR 195
           P YAERFI +HFKR
Sbjct: 181 PLYAERFIREHFKR 194

[Close]

BLAST of Sed0009441 vs. ExPASy TrEMBL
Match: A0A6J1J4G4 (protein DCL homolog, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481165 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.6e-74
Identity = 142/194 (73.20%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   MAASFIRRGHSLLRLGFRPSGLCTGIVQVAGRSLCTATAASTPPDGDLTSAENTTSPLSA 60
           M AS + RGH L+RLG R  GLCTGI+QV  RS CTA  ASTPP G L+SAENTTS LS 
Sbjct: 1   MVASLLLRGHPLIRLGLRNRGLCTGILQVTRRSCCTAMPASTPPGGGLSSAENTTSVLST 60

Query: 61  SEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVAD 120
           ++PPKYQ   +  +RKWK+QE+EILSDI+PIISLT+EIL S RYV+GERLT EDE+IV D
Sbjct: 61  TDPPKYQRWDEPGYRKWKNQEEEILSDIDPIISLTKEILHSNRYVDGERLTFEDEKIVVD 120

Query: 121 RLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKY 180
           RLL HHP AEDKIGCGLESIMV+RHPQFR S CLFVIRTDG WIDFSY  CLR YIRNKY
Sbjct: 121 RLLAHHPHAEDKIGCGLESIMVDRHPQFRHSRCLFVIRTDGGWIDFSYQKCLRAYIRNKY 180

Query: 181 PSYAERFIEKHFKR 195
           P YA+RFI +HFKR
Sbjct: 181 PLYADRFIREHFKR 194

[Close]

BLAST of Sed0009441 vs. ExPASy TrEMBL
Match: A0A0A0L0D6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641650 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.2e-74
Identity = 142/194 (73.20%), Postives = 157/194 (80.93%), Query Frame = 0


Query: 1   MAASFIRRGHSLLRLGFRPSGLCTGIVQVAGRSLCTATAASTPPDGDLTSAENTTSPLSA 60
           MAASF+ RGH LLRLG +  G CTGIVQV  R  C+ATAASTP DGDLT+ +N TS +S 
Sbjct: 16  MAASFLFRGHPLLRLGLKRRGQCTGIVQVTCRFCCSATAASTPSDGDLTAGDNATSVVSV 75

Query: 61  SEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVAD 120
           SEPPKY    + D+RKWK+QE+EIL DIEPII LT+EIL S RY +GERLTLEDER V D
Sbjct: 76  SEPPKYLRWDEPDYRKWKNQEEEILGDIEPIIFLTKEILHSHRYADGERLTLEDERTVVD 135

Query: 121 RLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKY 180
           RLL HHP AEDKIGCGLESIMV+RHPQFR S C FVIRTDG WIDFSY  CLR YIRNKY
Sbjct: 136 RLLAHHPHAEDKIGCGLESIMVDRHPQFRQSRCFFVIRTDGGWIDFSYQKCLRAYIRNKY 195

Query: 181 PSYAERFIEKHFKR 195
           PS+AERFI +HFKR
Sbjct: 196 PSFAERFIREHFKR 209

[Close]

BLAST of Sed0009441 vs. TAIR 10
Match: AT3G46630.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 186.4 bits (472), Expect = 2.2e-47
Identity = 104/208 (50.00%), Postives = 136/208 (65.38%), Query Frame = 0


Query: 1   MAASFIRRGHSLLRLGF-----RPSGLCTGIVQVAGRSLCTA---------TAASTPPDG 60
           M +  + R   LLR GF     +   +  GI+    R LC+            + +P +G
Sbjct: 1   MTSLLLLRTLPLLRNGFLNHRHQVGIVAGGILSHRRRLLCSLADRPQFYENNDSVSPVEG 60

Query: 61  DLTSAENTTSPLSASEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVN 120
              +A N TSP+      +Y+   D D+RKWK+ E EIL DIEPI  L +EIL S+RY++
Sbjct: 61  SGAAAMNVTSPV-VDNSWRYE---DPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLD 120

Query: 121 GERLTLEDERIVADRLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDF 180
           GERL  EDE+IV ++LL +HP ++DKIGCGL+ IMV+RHPQFR S CLFV+RTDG WIDF
Sbjct: 121 GERLDFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDF 180

Query: 181 SYLMCLRGYIRNKYPSYAERFIEKHFKR 195
           SY  CLR Y+R+KYPS+AERFI +HFKR
Sbjct: 181 SYQKCLRAYVRDKYPSHAERFIREHFKR 204

[Close]

BLAST of Sed0009441 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-29
Identity = 57/136 (41.91%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 60  ASEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVA 119
           +SE  + +   +++  ++ D E +IL    P++   R IL S +Y N +RL+ E ER + 
Sbjct: 80  SSEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTII 139

Query: 120 DRLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNK 179
           + LL +HP+ E KIGCG++ IMV  HP F  S C+F++R DG  +DFSY  C++G I+ K
Sbjct: 140 EMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKK 199

Query: 180 YPSYAERFIEKHFKRR 196
           YP YA+ FI +HF++R
Sbjct: 200 YPLYADSFILRHFRKR 215

[Close]

BLAST of Sed0009441 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) )

HSP 1 Score: 125.6 bits (314), Expect = 4.6e-29
Identity = 57/136 (41.91%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 60  ASEPPKYQTRHDADHRKWKDQEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVA 119
           +SE  + +   +++  ++ D E +IL    P++   R IL S +Y N +RL+ E ER + 
Sbjct: 80  SSEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTII 139

Query: 120 DRLLVHHPQAEDKIGCGLESIMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNK 179
           + LL +HP+ E KIGCG++ IMV  HP F  S C+F++R DG  +DFSY  C++G I+ K
Sbjct: 140 EMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKK 199

Query: 180 YPSYAERFIEKHFKRR 196
           YP YA+ FI +HF++R
Sbjct: 200 YPLYADSFILRHFRKR 215

[Close]

BLAST of Sed0009441 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 104.8 bits (260), Expect = 8.3e-23
Identity = 47/115 (40.87%), Postives = 75/115 (65.22%), Query Frame = 0


Query: 80   QEKEILSDIEPIISLTREILRSERYVNGERLTLEDERIVADRLLVHHPQAEDKIGCGLES 139
            +E+E+LSD+EP++   R+I+    Y +G+ ++ +D+  V +++L  HPQ E K+G G++ 
Sbjct: 1735 EEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDF 1794

Query: 140  IMVNRHPQFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKYPSYAERFIEKHFKR 195
            I V++H  F  S C FV+ TDG+  DFSY   L  Y+  KYP  AE FI+K+F +
Sbjct: 1795 ITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

[Close]

BLAST of Sed0009441 vs. TAIR 10
Match: AT1G63020.1 (nuclear RNA polymerase D1A )

HSP 1 Score: 45.8 bits (107), Expect = 4.6e-05
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 87   DIEPIISLTREILRSERYVNGERLTLEDERIVADRLLVHHPQAEDKIGCGLESIMVNRHP 146
            +IE +    + IL S  Y   E L   DE +V   +L  HP + +KIG G++ I V +  
Sbjct: 1338 NIELLSQSLKRILHS--YEINELLNERDEGLV-KMVLQLHPNSVEKIGPGVKGIRVAK-S 1397

Query: 147  QFRCSTCLFVIRTDGSWIDFSYLMCLRGYIRNKYPSYAERFIEKHFK 194
            +   S C  V+R DG++ DFSY  C+ G  +   P     +  K+ K
Sbjct: 1398 KHGDSCCFEVVRIDGTFEDFSYHKCVLGATKIIAPKKMNFYKSKYLK 1440

The following BLAST results are available for this feature:

BLAST of Sed0009441 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135338.1	1.9e-77	76.80	protein DCL, chloroplastic isoform X1 [Momordica charantia]	[more]
XP_008452601.1	2.3e-75	73.71	PREDICTED: protein DCL, chloroplastic [Cucumis melo]	[more]
KAG7037785.1	3.0e-75	74.23	Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6608449.1	3.0e-75	74.23	Protein DCL-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022940238.1	4.0e-75	74.23	protein DCL homolog, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Sed0009441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C642	2.2e-28	41.91	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]
Q42463	1.0e-25	36.81	Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1	[more]
Q5D869	1.2e-21	40.87	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]
Q9LQ02	6.5e-04	32.71	DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]

BLAST of Sed0009441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4J4	9.2e-78	76.80	protein DCL, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A1S3BU88	1.1e-75	73.71	protein DCL, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493574 PE=4 SV=1	[more]
A0A6J1FNQ4	1.9e-75	74.23	protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J4G4	1.6e-74	73.20	protein DCL homolog, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A0A0L0D6	6.2e-74	73.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641650 PE=4 SV=1	[more]

BLAST of Sed0009441 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46630.1	2.2e-47	50.00	Protein of unknown function (DUF3223)	[more]
AT1G45230.1	1.6e-29	41.91	Protein of unknown function (DUF3223)	[more]
AT1G45230.2	4.6e-29	41.91	Protein of unknown function (DUF3223)	[more]
AT2G40030.1	8.3e-23	40.87	nuclear RNA polymerase D1B	[more]
AT1G63020.1	4.6e-05	32.71	nuclear RNA polymerase D1A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.40		coord: 81..177 e-value: 8.9E-21 score: 76.2
None	No IPR available	PFAM	PF11523	DUF3223	coord: 97..172 e-value: 2.2E-24 score: 85.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..63
None	No IPR available	PANTHER	PTHR33415:SF4	DCL PROTEIN (DUF3223)	coord: 1..194
IPR044673	Protein DCL-like	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 1..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009441.1	Sed0009441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding