Sed0009365 (gene) Chayote v1

Overview


Name	Sed0009365
Type	gene
Organism	Sechium edule (Chayote v1)
Description	methyl-CpG-binding domain-containing protein 4-like
Location	LG07: 2894008 .. 2897574 (+)
RNA-Seq Expression	Sed0009365
Synteny	Sed0009365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGGGCTTATTTAATGCAGCTTTCGTCGAATTCCGCGCGACAGGAGATCACACCAGAGAGACATGGCCGCCGTCAAGCCTCCGAAAACGCCGATGAAGGTACGGCCGGAACCCTAACCTCTCCCTCCGATTACTTCTCTATTTTCCCTGATCGGATTCAATTTTATTTCATTTGGCTTCTCGGAAATTGTAACCCTTAAATTCTGAAGATCCTAACGGAAAATAGATAACTGAAAAAAAAAGATCTAAGAAAGCTGATAGTGCTTGGAATCGGATGTGGATGTTCACTAATAACAATCGATGGTGGCGAGCTACCTAGAAATTAATTTCGTGCGAGTTTTCTTGGCAACCAAATTTTGTAGGGTCAGACAGTATGTCCCGTGACATCAATCGAGCTGCCCGTAAGTTGGCTCGGACAGTCGTGGATATAAAAAAAAAATGGTGCGAAATTGTCTGCTACATTTGTAGTTTCTTTTAATAAATTATAGTAAATAGAGGGATTTGGATCTATGACCCATATTGAGGAGATGATCACTTGGGTTTTGCTTAACTGCAGAAACAGGCAATTTACAGAACTTGATACTAGTTTCAAGTTTGTAAGTTCGTCTCTAAGCATTTGTTTGTATGAAGTAGTGCTCCCCTCCTTGAGATCACATTGTTTAGGAAACAAAACAATGAATTGTTGAATGAAAGTATTACATTAGCTGGTCAAGAAAATACATTACGAAACTAAAAGGTTGTGGGCTCAATCCATGATGGCCATCTACCTAGGAATCAATTTACTACAAATTTTCTTGACATTCAAATGTTGTAGGGTCAGACGGTATGTCCTGTGATAATAATCGAGGTGCTTGCAAGCTGGCTCGGACTCTCACGGATATTAAGAAAAAATGACAATACTGATAATATGAGAAAGAAAAACGACTATGAAGGAACTCATAGTGTGATAAACCCATAAGAAAGCAACGATAATCCTCAAAGAAAAACCAATAAGACAATAGACACAAACTAAATCCAACCTAATCCCAATAATATAGGCCTAAAGGAGAGTGATGAGAAACTTGATAGGATTGTGTTCTTCTCCATGATCTGCGATTCTAGCAAAGGAGGACGGAAACGGTAGTTGACTGTAAGTCCAAAGGGATTTGTATAGGAATATATCTTAGAAGATATTTTCCCTTCCAAAACCCATCAAGCAGCCATTCAAACATAATCTTACAGAATTTCATCTTGTAATTGAATTAATAAAGATTTGTTAGCAATGGCTGTAGGTAAGTTATTTTGATATTCAGAGTCAGCTGTTATTGGGTTGGGCACTCAATTTTCTTCACTTTGGTCACATTTGTTGACCATTTGGTGTGCTTTCTCATCATTTTTATACAATGGTTTTATCTTTTAGTGTTGTTAGCCTAATTTCAAAAACAGGAACAAGATTTTGGAAACTACATTTTGTCAGTTTTCAAAACTTGACTTGGTTTCTAAAAACGTAGGTAAAACCGTACAAGTAGATAACAAAACAAGAACATCCATTAGTATTCATAGGCTTAATTTTCAAAAAACTAGAAACAAAAAATCAGGGGCTTTAGTTTTTATGTTATTTACTTAGGTATATCATAACTAGATCAATTTGAATTTTCAAATCTTGAAGTTTAAAGTGAAAGTTAGAAATCAATAATAGTTTTCTCTCAAGTTTAAGGGATCTTACAAATTTTAATTTAGAACTTGCTGGGGGTCTTTATCTGCAGTTCAATTGTGTTTTGAATCTGTAAGTATCTCTCTCTAAACCCACTTTCTCTTTAATGGCTCCCAAAGAAAAAAAACCTAGCCAGCTTGAACTTGCTGGGACTCTTCTTATTTATTTTTCTCCTTTGTTTTTGTTTTATGATGTTTTTCTCTCCCTCGTCATTCGAAAGATTTCGTTAGAAACATTTAGTTGCCATCGATCTTCGTCTTGCTAGCATGCTCTTCCACCTATCTTCCTCGAACCCGTGTCTCTGCCGATTTTGTCATCTTTTCTCCTCTTGTGTCCTACATTCACAGCTGCTGCCAAGTTCTTCAACACCCAATGGAAGCTCGTGCGGCTACTTCATCTTAATGCCTTTACGTTTCTCCTTTTCTTCACCATCACGATTTACAACCTCTGACGACACCAAGCCTATGCTGACAACTATTGCTATGTTTTGTCTCCATCGAACATTGGAAGCCTCGATTTGCCTTTTCTTCCTCGAGCATGAGGACATGGAATTTCATCAACCACGAGAACGCAAGGCATAGATACAGTGGCATTGATGCTCTCAAGGCTGCATGTTTATCTTCAACAACAAACTCGCCTTGTACATCTTCATCGACGTTTTCCAATGAAGCCTACACCATGATTATTGTTCCGATCAATGGGCATTTTAACTAGGAATAATTTGGTGGCTTATCTTCCTTCATCACTGACGTAATCGACTTACGAGCCTCAATCGACATTTTGTATCATCATCTCGTTCGAGATCCCTCCCTTTATCATTTGTTATTTGGGGCTTATTTATTATATTGTTTGAACGTTTCTAATTTACCTATGTATCGATCTGTGTCGGTTTCCCCATTTCTCTCTTATCCTTCTTTCTAGCGCTTGTTTCGAGAGGTTTCTGTAACACTTCAACAAGTCAATTAAATTGTCAAAAAAAAGTTTTGATTCTAAAATTAACAAGTGCATGTAAATTAATAGAAGCCTCTTTTTGTGTAAAAAGCTAAGGTGCTATTGGTTTCTCTTTACAGACATCACGATTGCCAGTAGGTATGTATGCTGCTCAATGCGAGGAATGCTTCAAATGGAGAGTGATAAGTACTCAAGAGGAGTACGAGGATATTAGAAGCAAATTAATAGAAGAACCTTTTACTTGCCATAGGAAATCCGATACTTCTTGTGAGGATCCTCCTGATATCGAGTACGATACATCTCGAACTTGGGTCATTGACAAACCTAACATCCCAAAGACCCCAAAAGGTTTCAAGAGAAATTTGGTGCTGAGAAGGAATTTTTCTAAGTTAGATGCTTACTACGTCACACCGACCGGTAAGACGGCTAGATCATCTACAGAGGTCCTGGCCTTTATAGAAGCAAATTCACAGTACAAGGATGTGCCTCTTTCAAGCTTCAGTTTTACAGTTCCAAAAATAATGCAAGAAACTGTGCCTGAAAGCATTTTGAATGAGGACTTGAAGAGCAGTAGTGCCAAGAGAATTAAAAAAGGATGAATTTGTTGATACTGACTGAAGGTGATTTCTTTGCTTTGGTAATGAAAGGATTCTGCTGCTGTTGATCTAAGCTCTTGTAAATGATTTTGTTCTGTTTTGACTTGAAACATGTAGAGTGGTGATTCTCCTCTAGTGTTATTGTACCATTTTCTGAAGGACAGTTGAGGAATTTTGTATCATATGCTCATGTTTAATGACACTGAGAAGATTCTTGTGACTTTGGGGATGAAAATCTACTTTTACCCCTAAACATGGTCAGCAGTACCACCTTTAACTCTTTTAATTTCAACTATTAATGTTAAGAACTTCAATTGATGTTTTTA

mRNA sequence

AATTGGGCTTATTTAATGCAGCTTTCGTCGAATTCCGCGCGACAGGAGATCACACCAGAGAGACATGGCCGCCGTCAAGCCTCCGAAAACGCCGATGAAGACATCACGATTGCCAGTAGGTATGTATGCTGCTCAATGCGAGGAATGCTTCAAATGGAGAGTGATAAGTACTCAAGAGGAGTACGAGGATATTAGAAGCAAATTAATAGAAGAACCTTTTACTTGCCATAGGAAATCCGATACTTCTTGTGAGGATCCTCCTGATATCGAGTACGATACATCTCGAACTTGGGTCATTGACAAACCTAACATCCCAAAGACCCCAAAAGGTTTCAAGAGAAATTTGGTGCTGAGAAGGAATTTTTCTAAGTTAGATGCTTACTACGTCACACCGACCGGTAAGACGGCTAGATCATCTACAGAGGTCCTGGCCTTTATAGAAGCAAATTCACAGTACAAGGATGTGCCTCTTTCAAGCTTCAGTTTTACAGTTCCAAAAATAATGCAAGAAACTGTGCCTGAAAGCATTTTGAATGAGGACTTGAAGAGCAGTAGTGCCAAGAGAATTAAAAAAGGATGAATTTGTTGATACTGACTGAAGGTGATTTCTTTGCTTTGGTAATGAAAGGATTCTGCTGCTGTTGATCTAAGCTCTTGTAAATGATTTTGTTCTGTTTTGACTTGAAACATGTAGAGTGGTGATTCTCCTCTAGTGTTATTGTACCATTTTCTGAAGGACAGTTGAGGAATTTTGTATCATATGCTCATGTTTAATGACACTGAGAAGATTCTTGTGACTTTGGGGATGAAAATCTACTTTTACCCCTAAACATGGTCAGCAGTACCACCTTTAACTCTTTTAATTTCAACTATTAATGTTAAGAACTTCAATTGATGTTTTTA

Coding sequence (CDS)

ATGGCCGCCGTCAAGCCTCCGAAAACGCCGATGAAGACATCACGATTGCCAGTAGGTATGTATGCTGCTCAATGCGAGGAATGCTTCAAATGGAGAGTGATAAGTACTCAAGAGGAGTACGAGGATATTAGAAGCAAATTAATAGAAGAACCTTTTACTTGCCATAGGAAATCCGATACTTCTTGTGAGGATCCTCCTGATATCGAGTACGATACATCTCGAACTTGGGTCATTGACAAACCTAACATCCCAAAGACCCCAAAAGGTTTCAAGAGAAATTTGGTGCTGAGAAGGAATTTTTCTAAGTTAGATGCTTACTACGTCACACCGACCGGTAAGACGGCTAGATCATCTACAGAGGTCCTGGCCTTTATAGAAGCAAATTCACAGTACAAGGATGTGCCTCTTTCAAGCTTCAGTTTTACAGTTCCAAAAATAATGCAAGAAACTGTGCCTGAAAGCATTTTGAATGAGGACTTGAAGAGCAGTAGTGCCAAGAGAATTAAAAAAGGATGA

Protein sequence

MAAVKPPKTPMKTSRLPVGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDTSCEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSSTEVLAFIEANSQYKDVPLSSFSFTVPKIMQETVPESILNEDLKSSSAKRIKKG

Homology

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BLAST of Sed0009365 vs. NCBI nr
Match: XP_038896997.1 (methyl-CpG-binding domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 292.0 bits (746), Expect = 3.4e-75
Identity = 137/170 (80.59%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 1   MAAVKPPKTPMKTSRLPVGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDT 60
           MAA +PPKTP+K++RLPVG++AAQCEECFKWR+ISTQEEYEDIRSK+IEEPFTC RK+DT
Sbjct: 30  MAAARPPKTPVKSARLPVGLFAAQCEECFKWRLISTQEEYEDIRSKMIEEPFTCPRKTDT 89

Query: 61  SCEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSSTE 120
           SC++PPDI+YDT+RTW IDKPNIPKTP GF R LVLR+NFSK DAYYVTPTGKT RSSTE
Sbjct: 90  SCDNPPDIDYDTTRTWGIDKPNIPKTPHGFTRRLVLRKNFSKFDAYYVTPTGKTVRSSTE 149

Query: 121 VLAFIEANSQYKDVPLSSFSFTVPKIMQETVPESILNEDLKSSSAKRIKK 171
           +LAF+EAN +YKD+PLSSFSF VPK+M+ETVPESIL E L SSSAKRIKK
Sbjct: 150 MLAFVEANPEYKDIPLSSFSFAVPKVMEETVPESILKEGLNSSSAKRIKK 199

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BLAST of Sed0009365 vs. NCBI nr
Match: XP_004148873.1 (methyl-CpG-binding domain-containing protein 4 [Cucumis sativus] >KGN44852.1 hypothetical protein Csa_016159 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 8.4e-74
Identity = 137/169 (81.07%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 2   AAVKPPKTPMKTSRLPVGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDTS 61
           AA +PPKTP K++RLPVG++AAQCEECFKWR+ISTQEEYE IRSK+IEEPFTC RK+DTS
Sbjct: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63

Query: 62  CEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSSTEV 121
           CEDPPDI+YDT+RTW IDKPNIPKTP+GF R LVLR+NF+K DAYYVTPTGKT RSSTEV
Sbjct: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123

Query: 122 LAFIEANSQYKDVPLSSFSFTVPKIMQETVPESILNEDLKSSSAKRIKK 171
           LAF+EAN QYKD+ LS+FSF VPKIM+ETVPESIL E L SSSAKRIKK
Sbjct: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKK 172

[Close]

BLAST of Sed0009365 vs. NCBI nr
Match: XP_022150154.1 (methyl-CpG-binding domain-containing protein 4-like [Momordica charantia])

HSP 1 Score: 285.8 bits (730), Expect = 2.4e-73
Identity = 134/170 (78.82%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MAAVKPPKTPMKTSRLPVGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDT 60
           MA  +PP+ P+K+ RLPV +YAAQCEECFKWR+ISTQEEYEDIRSKLIEEPFTC+RK+DT
Sbjct: 26  MAGARPPRKPVKSKRLPVDLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCNRKTDT 85

Query: 61  SCEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSSTE 120
           SCED  DI+YD +RTWVIDKPNIPKTP+GFKR LVLR++FSK DAYY+TPTGKT RSSTE
Sbjct: 86  SCEDASDIDYDATRTWVIDKPNIPKTPEGFKRRLVLRKDFSKFDAYYITPTGKTVRSSTE 145

Query: 121 VLAFIEANSQYKDVPLSSFSFTVPKIMQETVPESILNEDLKSSSAKRIKK 171
           +L+FIEAN +YKD+PLS FSF VPK+M+ETVPESIL EDL SSSAKRIKK
Sbjct: 146 MLSFIEANPKYKDIPLSKFSFAVPKVMEETVPESILREDLSSSSAKRIKK 195

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BLAST of Sed0009365 vs. NCBI nr
Match: XP_023513509.1 (methyl-CpG-binding domain-containing protein 4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.0 bits (728), Expect = 4.2e-73
Identity = 138/171 (80.70%), Postives = 153/171 (89.47%), Query Frame = 0


Query: 1   MAAVKPPK-TPMKTSRLPVGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSD 60
           MAAVKPPK TP K   LPVG+YAAQCEECFKWR+IS+QEEYEDIRS+LIEEPFTCHRK+D
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSST 120
           TSCEDPPDI+YDT+RTWVIDKPN+PKTPKGFKR LVLRRNFSKLDAYYVTPTGKT RSST
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 EVLAFIEANSQYKDVPLSSFSFTVPKIMQETVPESILNEDLKSSSAKRIKK 171
           +++AF+EAN QYKD+PLS FSF VPK+M+ETVPESIL      SS KR KK
Sbjct: 121 KMIAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSGF--SSCKRSKK 169

[Close]

BLAST of Sed0009365 vs. NCBI nr
Match: XP_022960475.1 (methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 285.0 bits (728), Expect = 4.2e-73
Identity = 139/171 (81.29%), Postives = 153/171 (89.47%), Query Frame = 0


Query: 1   MAAVKPPK-TPMKTSRLPVGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSD 60
           MAAVKPPK TP K   LPVG+YAAQCEECFKWR+IS+QEEYEDIRS+LIEEPFTCHRK+D
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSST 120
           TSCEDPPDI+YDT+RTWVIDKPN+PKTPKGFKR LVLRRNFSKLDAYYVTPTGKT RSST
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 EVLAFIEANSQYKDVPLSSFSFTVPKIMQETVPESILNEDLKSSSAKRIKK 171
           ++LAF+EAN QYKD+PLS FSF VPK+M+ETVPESIL      SS KR KK
Sbjct: 121 KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCF--SSCKRSKK 169

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BLAST of Sed0009365 vs. ExPASy Swiss-Prot
Match: Q9LYB9 (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=MBD4 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-51
Identity = 91/151 (60.26%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 5   KPPKTPMKTSRLP---VGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDTS 64
           KP K   K    P   +  YAAQC+ C KWRVI +QEEYEDIRSK++E+PF C +K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 65  CEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSSTEV 124
           CE+P DI+YD+SRTWVIDKP +PKTPKGFKR+LVLR+++SK+D YY TPTGK  RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 125 LAFIEANSQYKDVPLSSFSFTVPKIMQETVP 153
            AF+EAN ++++ PL  F+FTVPK+M++TVP
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVP 159

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BLAST of Sed0009365 vs. ExPASy Swiss-Prot
Match: Q5XEN5 (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=MBD1 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.8e-48
Identity = 85/149 (57.05%), Postives = 113/149 (75.84%), Query Frame = 0


Query: 18  VGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDTSCEDPPDIEYDTSRTWV 77
           + ++A QCE+C KWR I TQ+EYEDIRS++ E+PF C  K   SCED  D+ YD+SRTWV
Sbjct: 52  IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSSRTWV 111

Query: 78  IDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSSTEVLAFIEANSQYKDVPLS 137
           IDKP +P+TP+GFKR+L+LR+++SK+DAYY+TPTGK  +S  E+ AFI+AN  YK   L 
Sbjct: 112 IDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDYKYALLG 171

Query: 138 SFSFTVPKIMQETVPESILNEDLKSSSAK 167
            F+FTVPK+M+ETVP  IL++     S K
Sbjct: 172 DFNFTVPKVMEETVPSGILSDRTPKPSRK 200

[Close]

BLAST of Sed0009365 vs. ExPASy Swiss-Prot
Match: Q8LA53 (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=MBD2 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-26
Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = 0


Query: 18  VGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHR----KSDTSCEDPPDIEYDTS 77
           +G +  QC  CFKWR++ + ++YE+IR +L+E PF C      K D SC+ P DI  D +
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 78  RTWVIDKPNIPKTPKGFKRNLVLRRNFSK--LDAYYVTPTGKTARSSTEVLAFIEANSQY 137
           R W IDKPNI + P G++R L +R        D YYV P+GK  RS+ EV  ++  NS+Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 138 --KDVPLSSFSFTVPKIMQE 150
             + V LS FSF +PK +Q+
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

[Close]

BLAST of Sed0009365 vs. ExPASy Swiss-Prot
Match: Q4PSK1 (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=MBD3 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-21
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 0


Query: 18  VGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDTSCEDPPD--IEYDT-SR 77
           +  YAAQC +C K R I +QE+YE+IRSK +E+ F C R     CE+P D  + +D+ + 
Sbjct: 9   IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTM 68

Query: 78  TWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYY--VTPTGKTARSSTEVLAFIEANSQYK 137
            W  D+ +IPKTP+G KR LV+R N  K+D YY  + P  K  +S  EV  FIE   ++K
Sbjct: 69  RWFQDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFK 128

Query: 138 DVPLSSFSFTVPK 146
           D+ L   SF  PK
Sbjct: 129 DMTLEEVSFAAPK 136

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BLAST of Sed0009365 vs. ExPASy Swiss-Prot
Match: Q9FZP6 (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN=MBD12 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.8e-14
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 0


Query: 24  QCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKS----DTSCEDPPDIEYDTSRTWVID 83
           QC +C KWR+I + + Y  I+   ++ PF C   S    + SC  P D    T  TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQD--GTTCDTW--- 62

Query: 84  KPNIPKTPKGFKRNLVLRRNFSKL-DAYYVTPTGKTARSSTEVLAFIEANSQY--KDVPL 143
            P+IP  P G+ R++ +R   +K  D YY  P+G+  RSS EV +F++ + +Y  + V  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 144 SSFSFTVPKIMQE 150
           S FSF +PK + +
Sbjct: 123 SQFSFQIPKPLDD 129

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BLAST of Sed0009365 vs. ExPASy TrEMBL
Match: A0A0A0K900 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G391290 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.1e-74
Identity = 137/169 (81.07%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 2   AAVKPPKTPMKTSRLPVGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDTS 61
           AA +PPKTP K++RLPVG++AAQCEECFKWR+ISTQEEYE IRSK+IEEPFTC RK+DTS
Sbjct: 4   AADRPPKTPTKSTRLPVGLFAAQCEECFKWRLISTQEEYEGIRSKIIEEPFTCQRKTDTS 63

Query: 62  CEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSSTEV 121
           CEDPPDI+YDT+RTW IDKPNIPKTP+GF R LVLR+NF+K DAYYVTPTGKT RSSTEV
Sbjct: 64  CEDPPDIDYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSSTEV 123

Query: 122 LAFIEANSQYKDVPLSSFSFTVPKIMQETVPESILNEDLKSSSAKRIKK 171
           LAF+EAN QYKD+ LS+FSF VPKIM+ETVPESIL E L SSSAKRIKK
Sbjct: 124 LAFVEANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKK 172

[Close]

BLAST of Sed0009365 vs. ExPASy TrEMBL
Match: A0A6J1D952 (methyl-CpG-binding domain-containing protein 4-like OS=Momordica charantia OX=3673 GN=LOC111018404 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73
Identity = 134/170 (78.82%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MAAVKPPKTPMKTSRLPVGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDT 60
           MA  +PP+ P+K+ RLPV +YAAQCEECFKWR+ISTQEEYEDIRSKLIEEPFTC+RK+DT
Sbjct: 26  MAGARPPRKPVKSKRLPVDLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCNRKTDT 85

Query: 61  SCEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSSTE 120
           SCED  DI+YD +RTWVIDKPNIPKTP+GFKR LVLR++FSK DAYY+TPTGKT RSSTE
Sbjct: 86  SCEDASDIDYDATRTWVIDKPNIPKTPEGFKRRLVLRKDFSKFDAYYITPTGKTVRSSTE 145

Query: 121 VLAFIEANSQYKDVPLSSFSFTVPKIMQETVPESILNEDLKSSSAKRIKK 171
           +L+FIEAN +YKD+PLS FSF VPK+M+ETVPESIL EDL SSSAKRIKK
Sbjct: 146 MLSFIEANPKYKDIPLSKFSFAVPKVMEETVPESILREDLSSSSAKRIKK 195

[Close]

BLAST of Sed0009365 vs. ExPASy TrEMBL
Match: A0A6J1H964 (methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461200 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.0e-73
Identity = 139/171 (81.29%), Postives = 153/171 (89.47%), Query Frame = 0


Query: 1   MAAVKPPK-TPMKTSRLPVGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSD 60
           MAAVKPPK TP K   LPVG+YAAQCEECFKWR+IS+QEEYEDIRS+LIEEPFTCHRK+D
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSST 120
           TSCEDPPDI+YDT+RTWVIDKPN+PKTPKGFKR LVLRRNFSKLDAYYVTPTGKT RSST
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 EVLAFIEANSQYKDVPLSSFSFTVPKIMQETVPESILNEDLKSSSAKRIKK 171
           ++LAF+EAN QYKD+PLS FSF VPK+M+ETVPESIL      SS KR KK
Sbjct: 121 KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCF--SSCKRSKK 169

[Close]

BLAST of Sed0009365 vs. ExPASy TrEMBL
Match: A0A5A7UVI7 (Methyl-CpG-binding domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002230 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.5e-73
Identity = 132/169 (78.11%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 2   AAVKPPKTPMKTSRLPVGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDTS 61
           AA +PPKTP+K++R+PVG++AAQCEECFKWR+ISTQEEYEDIRS++IEEPFTC R++DTS
Sbjct: 3   AAARPPKTPIKSTRVPVGLFAAQCEECFKWRLISTQEEYEDIRSRMIEEPFTCQRRTDTS 62

Query: 62  CEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSSTEV 121
           CEDPPDI YDT+RTW IDKPNIPKTP+GF R LVLR+NF+K DAYYVTPTGKT RS TE+
Sbjct: 63  CEDPPDINYDTTRTWGIDKPNIPKTPEGFTRRLVLRKNFTKFDAYYVTPTGKTVRSPTEI 122

Query: 122 LAFIEANSQYKDVPLSSFSFTVPKIMQETVPESILNEDLKSSSAKRIKK 171
           LAF++AN QYKD+ LS+FSF VPKIM+ETVPESIL E L SSSAKRIKK
Sbjct: 123 LAFVQANPQYKDIALSNFSFAVPKIMEETVPESILKEGLNSSSAKRIKK 171

[Close]

BLAST of Sed0009365 vs. ExPASy TrEMBL
Match: A0A6J1KWY1 (methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497887 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.5e-73
Identity = 138/171 (80.70%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 1   MAAVKPPK-TPMKTSRLPVGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSD 60
           MAAVKPPK TP K   LPVG+YAAQCEECFKWR+IS+QEEYEDIRS+LIEEPFTCHRK+D
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSST 120
           TSCEDPPDI+YDT+RTWVIDKPN+PKTPKGFKR LVLRRNFSKLDAYYVTPTGKT RSST
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 EVLAFIEANSQYKDVPLSSFSFTVPKIMQETVPESILNEDLKSSSAKRIKK 171
           ++L F+EAN QYKD+PLS FSF VPK+M+ETVPESIL      SS KR KK
Sbjct: 121 KMLTFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSGF--SSCKRSKK 169

[Close]

BLAST of Sed0009365 vs. TAIR 10
Match: AT3G63030.1 (methyl-CPG-binding domain 4 )

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-52
Identity = 91/151 (60.26%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 5   KPPKTPMKTSRLP---VGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDTS 64
           KP K   K    P   +  YAAQC+ C KWRVI +QEEYEDIRSK++E+PF C +K   S
Sbjct: 9   KPAKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMS 68

Query: 65  CEDPPDIEYDTSRTWVIDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSSTEV 124
           CE+P DI+YD+SRTWVIDKP +PKTPKGFKR+LVLR+++SK+D YY TPTGK  RS  E+
Sbjct: 69  CEEPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEI 128

Query: 125 LAFIEANSQYKDVPLSSFSFTVPKIMQETVP 153
            AF+EAN ++++ PL  F+FTVPK+M++TVP
Sbjct: 129 AAFVEANPEFRNAPLGDFNFTVPKVMEDTVP 159

[Close]

BLAST of Sed0009365 vs. TAIR 10
Match: AT4G22745.1 (methyl-CPG-binding domain 1 )

HSP 1 Score: 192.2 bits (487), Expect = 3.4e-49
Identity = 85/149 (57.05%), Postives = 113/149 (75.84%), Query Frame = 0


Query: 18  VGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHRKSDTSCEDPPDIEYDTSRTWV 77
           + ++A QCE+C KWR I TQ+EYEDIRS++ E+PF C  K   SCED  D+ YD+SRTWV
Sbjct: 52  IDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSSRTWV 111

Query: 78  IDKPNIPKTPKGFKRNLVLRRNFSKLDAYYVTPTGKTARSSTEVLAFIEANSQYKDVPLS 137
           IDKP +P+TP+GFKR+L+LR+++SK+DAYY+TPTGK  +S  E+ AFI+AN  YK   L 
Sbjct: 112 IDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDYKYALLG 171

Query: 138 SFSFTVPKIMQETVPESILNEDLKSSSAK 167
            F+FTVPK+M+ETVP  IL++     S K
Sbjct: 172 DFNFTVPKVMEETVPSGILSDRTPKPSRK 200

[Close]

BLAST of Sed0009365 vs. TAIR 10
Match: AT5G35330.1 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 120.9 bits (302), Expect = 9.7e-28
Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = 0


Query: 18  VGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHR----KSDTSCEDPPDIEYDTS 77
           +G +  QC  CFKWR++ + ++YE+IR +L+E PF C      K D SC+ P DI  D +
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 78  RTWVIDKPNIPKTPKGFKRNLVLRRNFSK--LDAYYVTPTGKTARSSTEVLAFIEANSQY 137
           R W IDKPNI + P G++R L +R        D YYV P+GK  RS+ EV  ++  NS+Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 138 --KDVPLSSFSFTVPKIMQE 150
             + V LS FSF +PK +Q+
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

[Close]

BLAST of Sed0009365 vs. TAIR 10
Match: AT5G35330.2 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 120.9 bits (302), Expect = 9.7e-28
Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = 0


Query: 18  VGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHR----KSDTSCEDPPDIEYDTS 77
           +G +  QC  CFKWR++ + ++YE+IR +L+E PF C      K D SC+ P DI  D +
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 78  RTWVIDKPNIPKTPKGFKRNLVLRRNFSK--LDAYYVTPTGKTARSSTEVLAFIEANSQY 137
           R W IDKPNI + P G++R L +R        D YYV P+GK  RS+ EV  ++  NS+Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 138 --KDVPLSSFSFTVPKIMQE 150
             + V LS FSF +PK +Q+
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

[Close]

BLAST of Sed0009365 vs. TAIR 10
Match: AT5G35330.3 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 120.9 bits (302), Expect = 9.7e-28
Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = 0


Query: 18  VGMYAAQCEECFKWRVISTQEEYEDIRSKLIEEPFTCHR----KSDTSCEDPPDIEYDTS 77
           +G +  QC  CFKWR++ + ++YE+IR +L+E PF C      K D SC+ P DI  D +
Sbjct: 56  IGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGT 115

Query: 78  RTWVIDKPNIPKTPKGFKRNLVLRRNFSK--LDAYYVTPTGKTARSSTEVLAFIEANSQY 137
           R W IDKPNI + P G++R L +R        D YYV P+GK  RS+ EV  ++  NS+Y
Sbjct: 116 RLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEY 175

Query: 138 --KDVPLSSFSFTVPKIMQE 150
             + V LS FSF +PK +Q+
Sbjct: 176 IGEGVKLSQFSFQIPKPLQD 195

The following BLAST results are available for this feature:

BLAST of Sed0009365 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896997.1	3.4e-75	80.59	methyl-CpG-binding domain-containing protein 4-like [Benincasa hispida]	[more]
XP_004148873.1	8.4e-74	81.07	methyl-CpG-binding domain-containing protein 4 [Cucumis sativus] >KGN44852.1 hyp...	[more]
XP_022150154.1	2.4e-73	78.82	methyl-CpG-binding domain-containing protein 4-like [Momordica charantia]	[more]
XP_023513509.1	4.2e-73	80.70	methyl-CpG-binding domain-containing protein 4-like isoform X1 [Cucurbita pepo s...	[more]
XP_022960475.1	4.2e-73	81.29	methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita moscha...	[more]

BLAST of Sed0009365 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYB9	1.6e-51	60.26	Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q5XEN5	4.8e-48	57.05	Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q8LA53	1.4e-26	43.57	Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q4PSK1	1.0e-21	44.36	Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9FZP6	7.8e-14	35.34	Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Sed0009365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K900	4.1e-74	81.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G391290 PE=4 SV=1	[more]
A0A6J1D952	1.2e-73	78.82	methyl-CpG-binding domain-containing protein 4-like OS=Momordica charantia OX=36...	[more]
A0A6J1H964	2.0e-73	81.29	methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita mosc...	[more]
A0A5A7UVI7	3.5e-73	78.11	Methyl-CpG-binding domain-containing protein 4 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1KWY1	3.5e-73	80.70	methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita maxi...	[more]

BLAST of Sed0009365 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63030.1	1.1e-52	60.26	methyl-CPG-binding domain 4	[more]
AT4G22745.1	3.4e-49	57.05	methyl-CPG-binding domain 1	[more]
AT5G35330.1	9.7e-28	43.57	methyl-CPG-binding domain protein 02	[more]
AT5G35330.2	9.7e-28	43.57	methyl-CPG-binding domain protein 02	[more]
AT5G35330.3	9.7e-28	43.57	methyl-CPG-binding domain protein 02	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	SMART	SM00391	TAM_2	coord: 78..151 e-value: 1.0E-10 score: 51.6
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 85..147 e-value: 4.9E-14 score: 51.8
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 76..146 score: 13.821161
IPR011124	Zinc finger, CW-type	PFAM	PF07496	zf-CW	coord: 21..67 e-value: 5.7E-11 score: 42.2
IPR011124	Zinc finger, CW-type	PROSITE	PS51050	ZF_CW	coord: 15..70 score: 11.784678
None	No IPR available	GENE3D	3.30.890.10		coord: 78..152 e-value: 4.2E-14 score: 54.1
None	No IPR available	GENE3D	3.30.40.100		coord: 20..69 e-value: 6.8E-6 score: 27.5
None	No IPR available	PANTHER	PTHR12396:SF10	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 12..166
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 12..166
None	No IPR available	CDD	cd01396	MeCP2_MBD	coord: 80..152 e-value: 2.97453E-18 score: 72.7905
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 58..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009365.1	Sed0009365.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding