Sed0009333 (gene) Chayote v1

Overview


Name	Sed0009333
Type	gene
Organism	Sechium edule (Chayote v1)
Description	high mobility group B protein 7-like
Location	LG01: 25399248 .. 25401701 (+)
RNA-Seq Expression	Sed0009333
Synteny	Sed0009333

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACAATCGGCGCTTCATTGTTCTTCTTCGAATCACTTCACAGAGGCTTCAATTCTTCTGCATTTTCATCGTCAACGAACTAGCGGCGGAGAAGAGGAAATGGCCGGCAGAGGATCCTCGAAATCCAGGAAGAGAGTGGAGGCGACTCCGGCAGACGACGCCGCTGCCACCGCCGCCGGCGCTTCCCTTGTCAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGGTTCGTTATTTTCACATTAATCGTTATTGATGTTCTTGTTGAGTTGTTCTCACTGGCCTAGGGTTTCAGAGGATGTATTCGTATTGCTGAATCTCTTTAACTTTATGTTTTCTCTGTTCTAAGATTTCTTCGTTGATGATATCGATGTGTCTGCGGTATACATTCCGAATACTTCGTTTCTTCGACTGTGTTTTAACCGAACTGTTGGATTTGGATTGTTTTTTCCCCGTATCGTTGGCGTAATCCTGAATTTTCAGTTAGGTTTTAGTCAGAATCGGTTCATTTTATTTCTTGATGTTCTTGTTGAGTTCCGTGTCTGGTTTAGTGCCAATAAGGATGTAGGATTCCTAAATTTTGTGGTTAATGAATAGATCTGGTTTTCTGTTTTCGTTTTAGATTCAATTTCCTCCATAGTAGAATGAAACGTTCGTTTCTCGTAGATTAAGGAATTTTAGAAGTTTCTGGATCAAGGAAGAAGTTGATTTCTCTGTTTTGATTTGTTAATTCTTTTGGCTGTTACAGTGATGAGTGTGGCAAAAGTGTTCCTGTTGCCCTAATCAGCATGCACAGCTGCAGCCTCGATGCTAAAATTAGAATGAATTTAGGTATATAATTTGTTTGGATTCATGTCAACTTTTTTCTTAGGGATTATTTTCTGATTTTGAACTATTGATACTTTGTTTTCATGCAGAGGCTCAGACTGTGGAGAAGCAAACACAAGCTAAGAAACCAACTGAAAGGTGTGTTACTCATTCCCCTGCTCTTTGTTTTGAGGAAAACTTTTACACATGGATAAGTAGGTAGTTTATGTTTAATGCATATGTGGCATGATTTGAGCCACACAATTTTGTTTTTTATACATAAATTAACTTGCGGTTAAATTATGTGGCTTATATGATGCTATATATGCATTAAGCATGCACTAACTATTTGTCCATGTGTGGGCAAGTTTCCCTCCTTTGTTTTTATCTGGTCCAGTTATTCACTTGTTTGTTTCTTTGTACAGGAAAAGATCAGCACCATCTGAACCCAAGGCTAAGAAATCCAAACCAGAGAAAAAGGGGAAGAAAGACAAAGATCCAAATGCCCCAAAACGCCCTCCTACAGCTTTCTTTGTCTTCATGTATGCAAATTACCTTCTTCCTTTTGCTCACAAGTGTCAGATTTATCACTTTTTCTTTCAACTTAATATCATTATTGTCATTCTTCAGGGACGAGTTCAGAAAGTCATATAAAGAAACACATCCTGATTCCAAAGGTGTTAAAGAGGTTAGCACAGATCCCATATGCACATGAGTTTCCAGTAAAAATTGTTGTATTGATTGCTCAAATTATTGTATGCTGTCTCCTGATAGAGAATTTCAATCATTTAGGTTGCTAAGGATGGTGGTGAGAAATGGAGATCACTGACTGATGAAGTGAGTTAAATAGTACTTGCCCTATTTGAAAACTTGTTTGTGTTTGTTTGTTCAATTAGTATAATCTTAACCTTATAATTATGACAGGAGAAGAAGCCTTATCAAGATAGAGCTGCTGAGCTGAAAGCAGAGTATGAAAAGGCCTTGGAAAGTCCAAGTGCTGAGAATGAAGATGTAAGATTTTAGCTCCAAACTGTTTGTATGTTTGGATTTTCTATCTATTTATACATATATAAGTATATATATATATATATATATATATATATATATATATATATATGTAATCTTTTCCATTTTTTGGAAGAGCTACTTTTTTTTTAATTTTGATTTGGGTTTTAAACTATATAGATGTCAAAAGTTTTAATTTTAAGAACAAAAAACAAAATAGTTATCACATAAGACTTTGATTATTCAAATGCTAATGTTATATTTGTTTCAGGATGAAAAAGAGACGGAAGAAGATGGTGAGAAGGTGGTTGAAGAAATAACAGATGAAGAGTAGAGCCATCCATGTTGAGTGTTTTGTGATAGCATAATAGTTAGAATCAGCTACTTCACTGCCTTGTTTGTGTTGTAAATTCAGTCTAATTTAGTCAAACCTGCTGTTGGATTCTATGTTTGCGTTTGAAGCAATTAGTACAAATACTTGATTTTTTGTTTCTTTTTTTCGGGTCTTTAGTTCTAACAACCCCAGTGAGAATTATTGAAGCGTTCTACTTTTCTTGTTCTGATCAGCTTGAAGGCCATGCATTTGTCTGAACAATTTCATACTCTGGTACATGCTCTTGGAATGTGCTACACCGTATTTCACG

mRNA sequence

TAACAATCGGCGCTTCATTGTTCTTCTTCGAATCACTTCACAGAGGCTTCAATTCTTCTGCATTTTCATCGTCAACGAACTAGCGGCGGAGAAGAGGAAATGGCCGGCAGAGGATCCTCGAAATCCAGGAAGAGAGTGGAGGCGACTCCGGCAGACGACGCCGCTGCCACCGCCGCCGGCGCTTCCCTTGTCAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGTGATGAGTGTGGCAAAAGTGTTCCTGTTGCCCTAATCAGCATGCACAGCTGCAGCCTCGATGCTAAAATTAGAATGAATTTAGAGGCTCAGACTGTGGAGAAGCAAACACAAGCTAAGAAACCAACTGAAAGGAAAAGATCAGCACCATCTGAACCCAAGGCTAAGAAATCCAAACCAGAGAAAAAGGGGAAGAAAGACAAAGATCCAAATGCCCCAAAACGCCCTCCTACAGCTTTCTTTGTCTTCATGGACGAGTTCAGAAAGTCATATAAAGAAACACATCCTGATTCCAAAGGTGTTAAAGAGGTTGCTAAGGATGGTGGTGAGAAATGGAGATCACTGACTGATGAAGAGAAGAAGCCTTATCAAGATAGAGCTGCTGAGCTGAAAGCAGAGTATGAAAAGGCCTTGGAAAGTCCAAGTGCTGAGAATGAAGATGATGAAAAAGAGACGGAAGAAGATGGTGAGAAGGTGGTTGAAGAAATAACAGATGAAGAGTAGAGCCATCCATGTTGAGTGTTTTGTGATAGCATAATAGTTAGAATCAGCTACTTCACTGCCTTGTTTGTGTTGTAAATTCAGTCTAATTTAGTCAAACCTGCTGTTGGATTCTATGTTTGCGTTTGAAGCAATTAGTACAAATACTTGATTTTTTGTTTCTTTTTTTCGGGTCTTTAGTTCTAACAACCCCAGTGAGAATTATTGAAGCGTTCTACTTTTCTTGTTCTGATCAGCTTGAAGGCCATGCATTTGTCTGAACAATTTCATACTCTGGTACATGCTCTTGGAATGTGCTACACCGTATTTCACG

Coding sequence (CDS)

ATGGCCGGCAGAGGATCCTCGAAATCCAGGAAGAGAGTGGAGGCGACTCCGGCAGACGACGCCGCTGCCACCGCCGCCGGCGCTTCCCTTGTCAGAGCCAAAGACGGCAGTGCTTTTGCTCGATGTGATGAGTGTGGCAAAAGTGTTCCTGTTGCCCTAATCAGCATGCACAGCTGCAGCCTCGATGCTAAAATTAGAATGAATTTAGAGGCTCAGACTGTGGAGAAGCAAACACAAGCTAAGAAACCAACTGAAAGGAAAAGATCAGCACCATCTGAACCCAAGGCTAAGAAATCCAAACCAGAGAAAAAGGGGAAGAAAGACAAAGATCCAAATGCCCCAAAACGCCCTCCTACAGCTTTCTTTGTCTTCATGGACGAGTTCAGAAAGTCATATAAAGAAACACATCCTGATTCCAAAGGTGTTAAAGAGGTTGCTAAGGATGGTGGTGAGAAATGGAGATCACTGACTGATGAAGAGAAGAAGCCTTATCAAGATAGAGCTGCTGAGCTGAAAGCAGAGTATGAAAAGGCCTTGGAAAGTCCAAGTGCTGAGAATGAAGATGATGAAAAAGAGACGGAAGAAGATGGTGAGAAGGTGGTTGAAGAAATAACAGATGAAGAGTAG

Protein sequence

MAGRGSSKSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRMNLEAQTVEKQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTAFFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALESPSAENEDDEKETEEDGEKVVEEITDEE

Homology

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BLAST of Sed0009333 vs. NCBI nr
Match: XP_022938415.1 (high mobility group B protein 7-like [Cucurbita moschata])

HSP 1 Score: 315.5 bits (807), Expect = 3.5e-82
Identity = 180/209 (86.12%), Postives = 192/209 (91.87%), Query Frame = 0


Query: 1   MAGRGSSKSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCS 60
           MAG GSSKSRKRVEATP   AAA + G SLVRAKDGSAFARCDECGKSVP ALISMHSCS
Sbjct: 1   MAGGGSSKSRKRVEATP---AAAASTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCS 60

Query: 61  LDAKIRMNLEAQTVEKQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTA 120
           LDAKIR NLEAQTVEKQTQAKKP E+KRSAPSEPKAKKS+ EK+GKKDKDPNAPKRPPTA
Sbjct: 61  LDAKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTA 120

Query: 121 FFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKAL- 180
           FFVFMD+FRKSYKE HPDSKGVKEVAK+GGEKW+S+TDEEKKPYQD+AAELKAEYEKAL 
Sbjct: 121 FFVFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALE 180

Query: 181 ESPSAENEDDEKETEEDGEKVVEEITDEE 209
           ES +AENE+DEKETEE  EK VEE+TDEE
Sbjct: 181 ESRNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Sed0009333 vs. NCBI nr
Match: XP_023550365.1 (high mobility group B protein 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.1 bits (806), Expect = 4.6e-82
Identity = 180/209 (86.12%), Postives = 191/209 (91.39%), Query Frame = 0


Query: 1   MAGRGSSKSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCS 60
           MAG GSSKSRKRVEATP   AAA   G SLVRAKDGSAFARCDECGKSVP ALISMHSCS
Sbjct: 1   MAGGGSSKSRKRVEATP---AAAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCS 60

Query: 61  LDAKIRMNLEAQTVEKQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTA 120
           LDAKIR NLEAQTVEKQTQAKKP E+KRSAPSEPKAKKS+ EK+GKKDKDPNAPKRPPTA
Sbjct: 61  LDAKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTA 120

Query: 121 FFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKAL- 180
           FFVFMD+FRKSYKE HPDSKGVKEVAK+GGEKW+S+TDEEKKPYQD+AAELKAEYEKAL 
Sbjct: 121 FFVFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALE 180

Query: 181 ESPSAENEDDEKETEEDGEKVVEEITDEE 209
           ES +AENE+DEKETEE  EK VEE+TDEE
Sbjct: 181 ESRNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Sed0009333 vs. NCBI nr
Match: XP_022992985.1 (high mobility group B protein 7-like [Cucurbita maxima])

HSP 1 Score: 313.5 bits (802), Expect = 1.3e-81
Identity = 179/209 (85.65%), Postives = 191/209 (91.39%), Query Frame = 0


Query: 1   MAGRGSSKSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCS 60
           MAG GSSKSRKRVEATP   AAA   G SLVRAKDGSAFARCDECGKSVP ALISMHSCS
Sbjct: 1   MAGGGSSKSRKRVEATP---AAAAPTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCS 60

Query: 61  LDAKIRMNLEAQTVEKQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTA 120
           LDAKIR NLEAQTV+KQTQAKKP E+KRSAPSEPKAKKS+ EK+GKKDKDPNAPKRPPTA
Sbjct: 61  LDAKIRTNLEAQTVDKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTA 120

Query: 121 FFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKAL- 180
           FFVFMD+FRKSYKE HPDSKGVKEVAK+GGEKW+S+TDEEKKPYQD+AAELKAEYEKAL 
Sbjct: 121 FFVFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALE 180

Query: 181 ESPSAENEDDEKETEEDGEKVVEEITDEE 209
           ES +AENE+DEKETEE  EK VEE+TDEE
Sbjct: 181 ESRNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Sed0009333 vs. NCBI nr
Match: KAG6579089.1 (High mobility group B protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 312.8 bits (800), Expect = 2.3e-81
Identity = 179/209 (85.65%), Postives = 190/209 (90.91%), Query Frame = 0


Query: 1   MAGRGSSKSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCS 60
           MAG GSSKSRKRVEATP   AAA   G SLVRAKDGSAFARCDECGKSVP ALISMHSCS
Sbjct: 1   MAGGGSSKSRKRVEATP---AAAATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCS 60

Query: 61  LDAKIRMNLEAQTVEKQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTA 120
           LDAKIR NLEAQTVEKQTQAKKP E+KRSAPSEPKAKK + EK+GKKDKDPNAPKRPPTA
Sbjct: 61  LDAKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKFRTEKRGKKDKDPNAPKRPPTA 120

Query: 121 FFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKAL- 180
           FFVFMD+FRKSYKE HPDSKGVKEVAK+GGEKW+S+TDEEKKPYQD+AAELKAEYEKAL 
Sbjct: 121 FFVFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALE 180

Query: 181 ESPSAENEDDEKETEEDGEKVVEEITDEE 209
           ES +AENE+DEKETEE  EK VEE+TDEE
Sbjct: 181 ESRNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Sed0009333 vs. NCBI nr
Match: XP_022141388.1 (high mobility group B protein 7 [Momordica charantia])

HSP 1 Score: 312.4 bits (799), Expect = 3.0e-81
Identity = 178/208 (85.58%), Postives = 190/208 (91.35%), Query Frame = 0


Query: 1   MAGRGSSKSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCS 60
           MAG GSSKSRKRVEATPAD  AA A G SLVRAKDGSAFARCDECGKSVPVALISMHSCS
Sbjct: 19  MAGGGSSKSRKRVEATPAD--AAVATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCS 78

Query: 61  LDAKIRMNLEAQTVEKQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTA 120
           LDAKIRMNLE+QTVEKQTQAKK +ERKRSA SEPKAKKSK EK+GKKD+DPNAPKRPPTA
Sbjct: 79  LDAKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTA 138

Query: 121 FFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALE 180
           FF+FMD+FRKSYKE HPDSKG KEVAK+GGEKW+SLTDEEKKPYQD+AAELK+EYEKALE
Sbjct: 139 FFIFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALE 198

Query: 181 SPSAENEDDEKETEEDGEKVVEEITDEE 209
           +   ENEDDEKE EE  EK VEEI+DEE
Sbjct: 199 NLKNENEDDEKEAEEAAEKEVEEISDEE 224

[Close]

BLAST of Sed0009333 vs. ExPASy Swiss-Prot
Match: Q8LDF9 (High mobility group B protein 7 OS=Arabidopsis thaliana OX=3702 GN=HMGB7 PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.9e-39
Identity = 111/205 (54.15%), Postives = 142/205 (69.27%), Query Frame = 0


Query: 8   KSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRM 67
           K RKRVEA  + + + T     L RAKDGSAFA C+ C KSV VALISMH+CSLDAKIR+
Sbjct: 12  KQRKRVEAETSSNTSTT-----LRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRV 71

Query: 68  NLEAQTVEKQTQA-KKPTERKRSAPSEPKAKKSKPEKKGKKDKD-PNAPKRPPTAFFVFM 127
           NLEAQ VE Q +A KKP E+K++    PK K+ K     KK     N PKRP TAFF+FM
Sbjct: 72  NLEAQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFM 131

Query: 128 DEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALESPSA- 187
            +FRK++K  H  S   K+ AK GGEKW+SLT+EEKK Y D+AAELKAEY K+LES  A 
Sbjct: 132 SDFRKTFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDAD 191

Query: 188 -ENEDDEKETEEDGEKVVEEITDEE 209
            E ED+EK++++  +   +++ D++
Sbjct: 192 EEEEDEEKQSDDVDDAEEKQVDDDD 210

[Close]

BLAST of Sed0009333 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.7e-16
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = 0


Query: 76  KQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTAFFVFMDEFRKSYKET 135
           K+ + K    +K +A +    K  K   KGK+ KDPN PKRPP+AFFVFM +FR+ YK+ 
Sbjct: 11  KKAETKLAVNKKGAAAT----KGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKD 70

Query: 136 HPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALE--SPSAENEDDEKET 195
           HP++K V  V K  GE+W+SL++EEK PY DRA + K EYE  L+  +   E +DDE+ +
Sbjct: 71  HPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLEGKDDEEGS 130

Query: 196 EEDGEKVVEEITDEE 209
           ++   +V +E  DEE
Sbjct: 131 DKSKSEVNDEDEDEE 141

[Close]

BLAST of Sed0009333 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-16
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 0


Query: 96  AKKSKPEKKGKKDKDPNAPKRPPTAFFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRS 155
           A+K    +KGK  KDPN PKR P+AFFVFM+EFRK +KE +P +K V  V K  G++W+S
Sbjct: 23  AEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKS 82

Query: 156 LTDEEKKPYQDRAAELKAEYEKAL------ESPSAEN---EDDEKETEEDGEKVVEEITD 209
           L++ +K PY  +A +LK EY KA+      ES +A+    +++E+E EE+ +K   E+ D
Sbjct: 83  LSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVND 142

[Close]

BLAST of Sed0009333 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-15
Identity = 60/135 (44.44%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 81  KKPTERKRSAPSEPKAKKS------KPEKKGKKDKDPNAPKRPPTAFFVFMDEFRKSYKE 140
           K  TE KR+ P     KK       KP  KGK  KDPN PKRPP+AFFVFM+EFRK + +
Sbjct: 5   KSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNK 64

Query: 141 THPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALESPSAEN-EDDEKET 200
            HP++K V  V K  G KW++++D EK PY  ++ + K EYEK + + + +  E      
Sbjct: 65  EHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGD 124

Query: 201 EEDGEKVVEEITDEE 209
           EE+ EK V E+ DE+
Sbjct: 125 EEESEKSVSEVNDED 139

[Close]

BLAST of Sed0009333 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.6e-15
Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 82  KPTERKRSAPSEPKAKKSKPEKKGK-KDKDPNAPKRPPTAFFVFMDEFRKSYKETHPDSK 141
           K  + K    S   +   KP K  K   KDPN PKRP +AFFVFM++FR +YKE HP +K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 142 GVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALESPSAENEDDEKETEEDGEKV 201
            V  V K GGEKW+SL+D EK PY  +A + K EYEK +++ + + E+  KE +E+ +K 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKE-DEESDKS 121

Query: 202 VEEITDEE 209
           V E+ DE+
Sbjct: 122 VSEVNDED 128

[Close]

BLAST of Sed0009333 vs. ExPASy TrEMBL
Match: A0A6J1FJR0 (high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111444667 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.7e-82
Identity = 180/209 (86.12%), Postives = 192/209 (91.87%), Query Frame = 0


Query: 1   MAGRGSSKSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCS 60
           MAG GSSKSRKRVEATP   AAA + G SLVRAKDGSAFARCDECGKSVP ALISMHSCS
Sbjct: 1   MAGGGSSKSRKRVEATP---AAAASTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCS 60

Query: 61  LDAKIRMNLEAQTVEKQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTA 120
           LDAKIR NLEAQTVEKQTQAKKP E+KRSAPSEPKAKKS+ EK+GKKDKDPNAPKRPPTA
Sbjct: 61  LDAKIRTNLEAQTVEKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTA 120

Query: 121 FFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKAL- 180
           FFVFMD+FRKSYKE HPDSKGVKEVAK+GGEKW+S+TDEEKKPYQD+AAELKAEYEKAL 
Sbjct: 121 FFVFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALE 180

Query: 181 ESPSAENEDDEKETEEDGEKVVEEITDEE 209
           ES +AENE+DEKETEE  EK VEE+TDEE
Sbjct: 181 ESRNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Sed0009333 vs. ExPASy TrEMBL
Match: A0A6J1JX92 (high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111489146 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 6.5e-82
Identity = 179/209 (85.65%), Postives = 191/209 (91.39%), Query Frame = 0


Query: 1   MAGRGSSKSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCS 60
           MAG GSSKSRKRVEATP   AAA   G SLVRAKDGSAFARCDECGKSVP ALISMHSCS
Sbjct: 1   MAGGGSSKSRKRVEATP---AAAAPTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCS 60

Query: 61  LDAKIRMNLEAQTVEKQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTA 120
           LDAKIR NLEAQTV+KQTQAKKP E+KRSAPSEPKAKKS+ EK+GKKDKDPNAPKRPPTA
Sbjct: 61  LDAKIRTNLEAQTVDKQTQAKKPAEKKRSAPSEPKAKKSRTEKRGKKDKDPNAPKRPPTA 120

Query: 121 FFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKAL- 180
           FFVFMD+FRKSYKE HPDSKGVKEVAK+GGEKW+S+TDEEKKPYQD+AAELKAEYEKAL 
Sbjct: 121 FFVFMDDFRKSYKEAHPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALE 180

Query: 181 ESPSAENEDDEKETEEDGEKVVEEITDEE 209
           ES +AENE+DEKETEE  EK VEE+TDEE
Sbjct: 181 ESRNAENEEDEKETEEVAEKEVEEVTDEE 206

[Close]

BLAST of Sed0009333 vs. ExPASy TrEMBL
Match: A0A6J1CKD5 (high mobility group B protein 7 OS=Momordica charantia OX=3673 GN=LOC111011800 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 178/208 (85.58%), Postives = 190/208 (91.35%), Query Frame = 0


Query: 1   MAGRGSSKSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCS 60
           MAG GSSKSRKRVEATPAD  AA A G SLVRAKDGSAFARCDECGKSVPVALISMHSCS
Sbjct: 19  MAGGGSSKSRKRVEATPAD--AAVATGPSLVRAKDGSAFARCDECGKSVPVALISMHSCS 78

Query: 61  LDAKIRMNLEAQTVEKQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTA 120
           LDAKIRMNLE+QTVEKQTQAKK +ERKRSA SEPKAKKSK EK+GKKD+DPNAPKRPPTA
Sbjct: 79  LDAKIRMNLESQTVEKQTQAKKSSERKRSASSEPKAKKSKVEKRGKKDRDPNAPKRPPTA 138

Query: 121 FFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALE 180
           FF+FMD+FRKSYKE HPDSKG KEVAK+GGEKW+SLTDEEKKPYQD+AAELK+EYEKALE
Sbjct: 139 FFIFMDDFRKSYKEDHPDSKGGKEVAKEGGEKWKSLTDEEKKPYQDKAAELKSEYEKALE 198

Query: 181 SPSAENEDDEKETEEDGEKVVEEITDEE 209
           +   ENEDDEKE EE  EK VEEI+DEE
Sbjct: 199 NLKNENEDDEKEAEEAAEKEVEEISDEE 224

[Close]

BLAST of Sed0009333 vs. ExPASy TrEMBL
Match: A0A6J1JNZ6 (high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111487589 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 4.1e-76
Identity = 164/207 (79.23%), Postives = 184/207 (88.89%), Query Frame = 0


Query: 1   MAGRGSSKSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCS 60
           MA R SS SRKRV+A P+D   A   G SLVRAKDGSAFARCDECGKSVP ALISMHSCS
Sbjct: 43  MAVRRSSSSRKRVDAAPSD---AATTGPSLVRAKDGSAFARCDECGKSVPAALISMHSCS 102

Query: 61  LDAKIRMNLEAQTVEKQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTA 120
           LD KIRMNLEAQTVEKQTQAKKP ERKRSAPSEPKA KSK +K+ KK+KDPNAPKRPPTA
Sbjct: 103 LDTKIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKNKDPNAPKRPPTA 162

Query: 121 FFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALE 180
           FF+FMD++RKS+KE +PDSKGVKEVAK+GGEKW+S+TDEEKKPYQD+AAELKAEY+KALE
Sbjct: 163 FFIFMDDYRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYKKALE 222

Query: 181 SPSAENEDDEKETEEDGEKVVEEITDE 208
           + +AENEDDEK+TEE  E+  EE+TDE
Sbjct: 223 TQNAENEDDEKDTEEVAEREAEEVTDE 246

[Close]

BLAST of Sed0009333 vs. ExPASy TrEMBL
Match: A0A6J1GYR9 (high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC111458705 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.6e-75
Identity = 164/207 (79.23%), Postives = 182/207 (87.92%), Query Frame = 0


Query: 1   MAGRGSSKSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCS 60
           MA R SS SRKRV+A P+D   A   G SLVRAKDGSAFARC ECGKSVP ALISMHSCS
Sbjct: 1   MAVRRSSSSRKRVDAAPSD---AATTGPSLVRAKDGSAFARCGECGKSVPAALISMHSCS 60

Query: 61  LDAKIRMNLEAQTVEKQTQAKKPTERKRSAPSEPKAKKSKPEKKGKKDKDPNAPKRPPTA 120
           LD KIRMNLEAQTVEKQTQAKKP ERKRSAPSEPKA KSK +K+ KKDKDPNAPKRPPTA
Sbjct: 61  LDTKIRMNLEAQTVEKQTQAKKPAERKRSAPSEPKATKSKTDKRKKKDKDPNAPKRPPTA 120

Query: 121 FFVFMDEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALE 180
           FF+FM++FRKS+KE +PDSKGVKEVAK+GGEKW+S+TDEEKKPYQD+AAELKAEYEKALE
Sbjct: 121 FFIFMEDFRKSFKEANPDSKGVKEVAKEGGEKWKSMTDEEKKPYQDKAAELKAEYEKALE 180

Query: 181 SPSAENEDDEKETEEDGEKVVEEITDE 208
           + + ENEDDEK+TEE  EK  E++TDE
Sbjct: 181 TRNTENEDDEKDTEEVTEKEAEKVTDE 204

[Close]

BLAST of Sed0009333 vs. TAIR 10
Match: AT5G23420.1 (high-mobility group box 6 )

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-40
Identity = 111/205 (54.15%), Postives = 142/205 (69.27%), Query Frame = 0


Query: 8   KSRKRVEATPADDAAATAAGASLVRAKDGSAFARCDECGKSVPVALISMHSCSLDAKIRM 67
           K RKRVEA  + + + T     L RAKDGSAFA C+ C KSV VALISMH+CSLDAKIR+
Sbjct: 12  KQRKRVEAETSSNTSTT-----LRRAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRV 71

Query: 68  NLEAQTVEKQTQA-KKPTERKRSAPSEPKAKKSKPEKKGKKDKD-PNAPKRPPTAFFVFM 127
           NLEAQ VE Q +A KKP E+K++    PK K+ K     KK     N PKRP TAFF+FM
Sbjct: 72  NLEAQVVETQAEAKKKPAEKKKTTSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFM 131

Query: 128 DEFRKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALESPSA- 187
            +FRK++K  H  S   K+ AK GGEKW+SLT+EEKK Y D+AAELKAEY K+LES  A 
Sbjct: 132 SDFRKTFKSEHNGSL-AKDAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDAD 191

Query: 188 -ENEDDEKETEEDGEKVVEEITDEE 209
            E ED+EK++++  +   +++ D++
Sbjct: 192 EEEEDEEKQSDDVDDAEEKQVDDDD 210

[Close]

BLAST of Sed0009333 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-16
Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 82  KPTERKRSAPSEPKAKKSKPEKKGK-KDKDPNAPKRPPTAFFVFMDEFRKSYKETHPDSK 141
           K  + K    S   +   KP K  K   KDPN PKRP +AFFVFM++FR +YKE HP +K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 142 GVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALESPSAENEDDEKETEEDGEKV 201
            V  V K GGEKW+SL+D EK PY  +A + K EYEK +++ + + E+  KE +E+ +K 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKE-DEESDKS 121

Query: 202 VEEITDEE 209
           V E+ DE+
Sbjct: 122 VSEVNDED 128

[Close]

BLAST of Sed0009333 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-16
Identity = 59/128 (46.09%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 82  KPTERKRSAPSEPKAKKSKPEKKGK-KDKDPNAPKRPPTAFFVFMDEFRKSYKETHPDSK 141
           K  + K    S   +   KP K  K   KDPN PKRP +AFFVFM++FR +YKE HP +K
Sbjct: 2   KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query: 142 GVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALESPSAENEDDEKETEEDGEKV 201
            V  V K GGEKW+SL+D EK PY  +A + K EYEK +++ + + E+  KE +E+ +K 
Sbjct: 62  SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKE-DEESDKS 121

Query: 202 VEEITDEE 209
           V E+ DE+
Sbjct: 122 VSEVNDED 128

[Close]

BLAST of Sed0009333 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-15
Identity = 62/140 (44.29%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 74  VEKQTQAKKPTE----RKRSAPSE-PKAKKSKPEKKGKKDKDPNAPKRPPTAFFVFMDEF 133
           V+   +A KP +     KR AP+E P  ++++ EKK K  KDPN PKR P+AFFVF+++F
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAK--KDPNKPKRAPSAFFVFLEDF 69

Query: 134 RKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALESPSAENED 193
           R ++K+ +P+ K V  V K GG+KW+S++  EK PY+++AA+ KAEYEK ++   A N++
Sbjct: 70  RVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMD---AYNKN 129

Query: 194 DEKETEEDGEKVVEEITDEE 209
            E E  ++ EK   EI DE+
Sbjct: 130 LE-EGSDESEKSRSEINDED 143

[Close]

BLAST of Sed0009333 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-15
Identity = 62/140 (44.29%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 74  VEKQTQAKKPTE----RKRSAPSE-PKAKKSKPEKKGKKDKDPNAPKRPPTAFFVFMDEF 133
           V+   +A KP +     KR AP+E P  ++++ EKK K  KDPN PKR P+AFFVF+++F
Sbjct: 10  VKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAK--KDPNKPKRAPSAFFVFLEDF 69

Query: 134 RKSYKETHPDSKGVKEVAKDGGEKWRSLTDEEKKPYQDRAAELKAEYEKALESPSAENED 193
           R ++K+ +P+ K V  V K GG+KW+S++  EK PY+++AA+ KAEYEK ++   A N++
Sbjct: 70  RVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMD---AYNKN 129

Query: 194 DEKETEEDGEKVVEEITDEE 209
            E E  ++ EK   EI DE+
Sbjct: 130 LE-EGSDESEKSRSEINDED 143

The following BLAST results are available for this feature:

BLAST of Sed0009333 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938415.1	3.5e-82	86.12	high mobility group B protein 7-like [Cucurbita moschata]	[more]
XP_023550365.1	4.6e-82	86.12	high mobility group B protein 7-like [Cucurbita pepo subsp. pepo]	[more]
XP_022992985.1	1.3e-81	85.65	high mobility group B protein 7-like [Cucurbita maxima]	[more]
KAG6579089.1	2.3e-81	85.65	High mobility group B protein 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022141388.1	3.0e-81	85.58	high mobility group B protein 7 [Momordica charantia]	[more]

BLAST of Sed0009333 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LDF9	2.9e-39	54.15	High mobility group B protein 7 OS=Arabidopsis thaliana OX=3702 GN=HMGB7 PE=1 SV...	[more]
P40620	2.7e-16	45.19	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]
P27347	7.7e-16	45.08	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]
P26585	2.9e-15	44.44	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	6.6e-15	46.09	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]

BLAST of Sed0009333 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJR0	1.7e-82	86.12	high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC1114446...	[more]
A0A6J1JX92	6.5e-82	85.65	high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111489146...	[more]
A0A6J1CKD5	1.4e-81	85.58	high mobility group B protein 7 OS=Momordica charantia OX=3673 GN=LOC111011800 P...	[more]
A0A6J1JNZ6	4.1e-76	79.23	high mobility group B protein 7-like OS=Cucurbita maxima OX=3661 GN=LOC111487589...	[more]
A0A6J1GYR9	2.6e-75	79.23	high mobility group B protein 7-like OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]

BLAST of Sed0009333 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23420.1	2.1e-40	54.15	high-mobility group box 6	[more]
AT1G20696.1	4.7e-16	46.09	high mobility group B3	[more]
AT1G20696.3	4.7e-16	46.09	high mobility group B3	[more]
AT3G51880.1	1.0e-15	44.29	high mobility group B1	[more]
AT3G51880.2	1.0e-15	44.29	high mobility group B1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 113..184 e-value: 2.5E-24 score: 96.8
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 114..179 e-value: 6.9E-22 score: 77.6
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 114..183 score: 19.034367
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 95..198 e-value: 4.7E-26 score: 93.0
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 101..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR47658:SF1	HIGH MOBILITY GROUP B PROTEIN 12-RELATED	coord: 6..201
None	No IPR available	PANTHER	PTHR47658	HIGH MOBILITY GROUP B PROTEIN 12-RELATED	coord: 6..201
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 114..180 e-value: 1.85781E-21 score: 81.9053

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009333.1	Sed0009333.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010197	polar nucleus fusion
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding