Sed0009315 (gene) Chayote v1

Overview


Name	Sed0009315
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transmembrane protein
Location	LG06: 37667961 .. 37668600 (-)
RNA-Seq Expression	Sed0009315
Synteny	Sed0009315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGGCTCCCAATTATCTTCACTCAACAATTCCTCATTTTGCTCTGTTTCTTCCCCCGCCATGGCCAGGCCAATCCCAACCTTTTTAAATCACGTTCCATTTTCATCAGCGTCGCTCATCGCTTCACTCGCAGCGCTGTCGATCTTGGCGCTCGTGGTTTTCATGTGCACCTCGTCGAGAAAATCGAAGATATCGAATCGGTTTGAGCAGCAGAGGAATTTGGTGTCCAAGATCAACAGTAACATCAGTTGTAAGGCGGTTTCGATGGCGAAGATGTTATCGTGGAGGAGGGTCGATGCGGCAGACGACGAAGAAGGACTTAGTGTCGACGACGACGACGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGGCCGCTTGAGTTTTCAGGGAAAATAGATTATGATTGTGATGGTAATTTGGTGTGCCATTCCAATAACACAGACTTTGAATCTGTTGAATCGTAGCACCATTTTCTCTCTGTTTTGTAAACTCGTCTGTTTCCGAGTTCGACGTAAGAAGTTGTTACATCAAAGTTCTGTAAATAATTTCTACTTTAGAAGTCAATTAAGAATGATAAGAACCCACGGAGCTCATAACAAGGTGCTTGGATATGAAATTATAGAGTG

mRNA sequence

AAATGGCTCCCAATTATCTTCACTCAACAATTCCTCATTTTGCTCTGTTTCTTCCCCCGCCATGGCCAGGCCAATCCCAACCTTTTTAAATCACGTTCCATTTTCATCAGCGTCGCTCATCGCTTCACTCGCAGCGCTGTCGATCTTGGCGCTCGTGGTTTTCATGTGCACCTCGTCGAGAAAATCGAAGATATCGAATCGGTTTGAGCAGCAGAGGAATTTGGTGTCCAAGATCAACAGTAACATCAGTTGTAAGGCGGTTTCGATGGCGAAGATGTTATCGTGGAGGAGGGTCGATGCGGCAGACGACGAAGAAGGACTTAGTGTCGACGACGACGACGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGGCCGCTTGAGTTTTCAGGGAAAATAGATTATGATTGTGATGGTAATTTGGTGTGCCATTCCAATAACACAGACTTTGAATCTGTTGAATCGTAGCACCATTTTCTCTCTGTTTTGTAAACTCGTCTGTTTCCGAGTTCGACGTAAGAAGTTGTTACATCAAAGTTCTGTAAATAATTTCTACTTTAGAAGTCAATTAAGAATGATAAGAACCCACGGAGCTCATAACAAGGTGCTTGGATATGAAATTATAGAGTG

Coding sequence (CDS)

ATGGCCAGGCCAATCCCAACCTTTTTAAATCACGTTCCATTTTCATCAGCGTCGCTCATCGCTTCACTCGCAGCGCTGTCGATCTTGGCGCTCGTGGTTTTCATGTGCACCTCGTCGAGAAAATCGAAGATATCGAATCGGTTTGAGCAGCAGAGGAATTTGGTGTCCAAGATCAACAGTAACATCAGTTGTAAGGCGGTTTCGATGGCGAAGATGTTATCGTGGAGGAGGGTCGATGCGGCAGACGACGAAGAAGGACTTAGTGTCGACGACGACGACGATGAGGTTTGGAGGAAGACGATTATCAGAGGCGAACGGTGTCGGCCGCTTGAGTTTTCAGGGAAAATAGATTATGATTGTGATGGTAATTTGGTGTGCCATTCCAATAACACAGACTTTGAATCTGTTGAATCGTAG

Protein sequence

MARPIPTFLNHVPFSSASLIASLAALSILALVVFMCTSSRKSKISNRFEQQRNLVSKINSNISCKAVSMAKMLSWRRVDAADDEEGLSVDDDDDEVWRKTIIRGERCRPLEFSGKIDYDCDGNLVCHSNNTDFESVES

Homology

[Close]

BLAST of Sed0009315 vs. NCBI nr
Match: KAG7036703.1 (hypothetical protein SDJN02_00323, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-40
Identity = 96/147 (65.31%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 1   MARPIPTFLN---HVPFSSASLIASLAALSILALVVFMCTSSRKSKISNRFEQQRNLVSK 60
           MA+P P+F N   H+PFSS SL+AS+A LSI ALV+F+CTSSRKSK      QQRN V+K
Sbjct: 1   MAKPFPSFSNHSYHLPFSSPSLVASIAVLSIFALVIFLCTSSRKSK-KPILLQQRNFVAK 60

Query: 61  INSNISCKAVSMAKMLSWRRVDAADDEEG--------LSVDDDDDEVWRKTIIRGERCRP 120
           +NSNIS +A+S+AKM+SWR+V+AAD++EG        LS DD DDEVWRKTIIRGERCRP
Sbjct: 61  VNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGFDLSGDDYDDEVWRKTIIRGERCRP 120

Query: 121 LEFSGKIDYDCDGNLVCHSNNTDFESV 137
           LEFSGKIDYD DGNL+C S   +F+SV
Sbjct: 121 LEFSGKIDYDSDGNLLCDSKR-EFKSV 145

[Close]

BLAST of Sed0009315 vs. NCBI nr
Match: KAG6607004.1 (hypothetical protein SDJN03_00346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 2.9e-40
Identity = 96/149 (64.43%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 1   MARPIPTFLN---HVPFSSASLIASLAALSILALVVFMCTSSRKSKISNRFEQQRNLVSK 60
           MA+P P+F N   H+PFSS SL+AS+A LSI ALV+F+CTSSRKSK      QQRN V+K
Sbjct: 1   MAKPFPSFSNHSYHLPFSSPSLVASIAVLSIFALVIFLCTSSRKSK-KPILLQQRNFVAK 60

Query: 61  INSNISCKAVSMAKMLSWRRVDAADDEEG----------LSVDDDDDEVWRKTIIRGERC 120
           +NSNIS +A+S+AKM+SWR+V+AAD++EG          LS DD DDEVWRKTIIRGERC
Sbjct: 61  VNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGGFDLSGDDYDDEVWRKTIIRGERC 120

Query: 121 RPLEFSGKIDYDCDGNLVCHSNNTDFESV 137
           RPLEFSGKIDYD DGNL+C S   +F+SV
Sbjct: 121 RPLEFSGKIDYDSDGNLLCDSKR-EFKSV 147

[Close]

BLAST of Sed0009315 vs. NCBI nr
Match: KGN57848.1 (hypothetical protein Csa_010872 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 3.5e-30
Identity = 84/155 (54.19%), Postives = 108/155 (69.68%), Query Frame = 0


Query: 1   MARPIPTFLN-----HVPFSSAS----LIASLAALSILALVVFMCTSSRKSKISNRFEQQ 60
           MARP PT  N     H+ F S      ++++   LSI AL++F+CTSSRK   SN+ +Q 
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRK---SNKSQQG 60

Query: 61  R-NLVSKINSNISCKAVSMAKMLSWRRVDAADDEEGLSVD-----------DDDDEVWRK 120
           R N VSK+NSNIS +A+SMAKM+SWR+V+AA++EE    +           D+++EVWRK
Sbjct: 61  RNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRK 120

Query: 121 TIIRGERCRPLEFSGKIDYDCDGNLVCHSNNTDFE 135
           TIIRGERCRPLEFSGKIDYD DGNL+C SN  DF+
Sbjct: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNR-DFK 151

[Close]

BLAST of Sed0009315 vs. NCBI nr
Match: TYK22452.1 (hypothetical protein E5676_scaffold712G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 4.3e-28
Identity = 83/149 (55.70%), Postives = 105/149 (70.47%), Query Frame = 0


Query: 1   MARPIPTF--LNHVP----FS---SASLIASLAALSILALVVFMCTSSRKSKISNRFEQQ 60
           MARP PT   L+H P    FS   S  ++++   LSI AL++F+CTSS KS  S   + +
Sbjct: 1   MARPFPTISNLSHHPHLLFFSTHFSFPILSTSTILSIFALLIFLCTSSTKSNKSQ--QGK 60

Query: 61  RNLVSKINSNISCKAVSMAKMLSWRRVDAAD---DEEGLSVDD---DDDEVWRKTIIRGE 120
              VSK+NSNIS +A+SMAK++SWR+V+AAD   +E G    D   D++EVWRKTIIRGE
Sbjct: 61  TTFVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEVWRKTIIRGE 120

Query: 121 RCRPLEFSGKIDYDCDGNLVCHSNNTDFE 135
           RCRPLEFSGKIDYD DGNL+C SN  DF+
Sbjct: 121 RCRPLEFSGKIDYDSDGNLLCDSNR-DFK 146

[Close]

BLAST of Sed0009315 vs. NCBI nr
Match: XP_038906595.1 (uncharacterized protein LOC120092546 [Benincasa hispida])

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-26
Identity = 78/138 (56.52%), Postives = 98/138 (71.01%), Query Frame = 0


Query: 1   MARPIPTFLNH--------VPFSSAS---LIASLAALSILALVVFMCTSSRKSKISNRFE 60
           MAR  P+  N         +PFSS +   LI+S+A LSI ALVVF+CTSSRK   SN+ +
Sbjct: 1   MARLFPSISNPSHHHHHHLLPFSSTNFSFLISSIAVLSIFALVVFLCTSSRK---SNKSQ 60

Query: 61  QQRNLVSKINSNISCKAVSMAKMLSWRRVDAADDEE--------GLSVDD---DDDEVWR 117
           Q+RN VSK+NSNIS +A+SMAKM+SWR+V+AAD+E+         LS DD   D++EVWR
Sbjct: 61  QRRNFVSKMNSNISSRAISMAKMISWRKVEAADEEDEEERRGSCNLSGDDEEEDEEEVWR 120

[Close]

BLAST of Sed0009315 vs. ExPASy TrEMBL
Match: A0A0A0L7R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.7e-30
Identity = 84/155 (54.19%), Postives = 108/155 (69.68%), Query Frame = 0


Query: 1   MARPIPTFLN-----HVPFSSAS----LIASLAALSILALVVFMCTSSRKSKISNRFEQQ 60
           MARP PT  N     H+ F S      ++++   LSI AL++F+CTSSRK   SN+ +Q 
Sbjct: 1   MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRK---SNKSQQG 60

Query: 61  R-NLVSKINSNISCKAVSMAKMLSWRRVDAADDEEGLSVD-----------DDDDEVWRK 120
           R N VSK+NSNIS +A+SMAKM+SWR+V+AA++EE    +           D+++EVWRK
Sbjct: 61  RNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRK 120

Query: 121 TIIRGERCRPLEFSGKIDYDCDGNLVCHSNNTDFE 135
           TIIRGERCRPLEFSGKIDYD DGNL+C SN  DF+
Sbjct: 121 TIIRGERCRPLEFSGKIDYDSDGNLLCDSNR-DFK 151

[Close]

BLAST of Sed0009315 vs. ExPASy TrEMBL
Match: A0A5D3DFS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold712G00010 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.1e-28
Identity = 83/149 (55.70%), Postives = 105/149 (70.47%), Query Frame = 0


Query: 1   MARPIPTF--LNHVP----FS---SASLIASLAALSILALVVFMCTSSRKSKISNRFEQQ 60
           MARP PT   L+H P    FS   S  ++++   LSI AL++F+CTSS KS  S   + +
Sbjct: 1   MARPFPTISNLSHHPHLLFFSTHFSFPILSTSTILSIFALLIFLCTSSTKSNKSQ--QGK 60

Query: 61  RNLVSKINSNISCKAVSMAKMLSWRRVDAAD---DEEGLSVDD---DDDEVWRKTIIRGE 120
              VSK+NSNIS +A+SMAK++SWR+V+AAD   +E G    D   D++EVWRKTIIRGE
Sbjct: 61  TTFVSKMNSNISSRAISMAKIISWRKVEAADELEEERGSGSCDELEDEEEVWRKTIIRGE 120

Query: 121 RCRPLEFSGKIDYDCDGNLVCHSNNTDFE 135
           RCRPLEFSGKIDYD DGNL+C SN  DF+
Sbjct: 121 RCRPLEFSGKIDYDSDGNLLCDSNR-DFK 146

[Close]

BLAST of Sed0009315 vs. ExPASy TrEMBL
Match: A0A059BTL4 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02821 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 59/128 (46.09%), Postives = 86/128 (67.19%), Query Frame = 0


Query: 4   PIPTFLNHVPFSSASLIASLAALSILALVVFMCTSSRKSKISNR------FEQQRNLVSK 63
           PI T +     S  S+   ++ LSIL+++ F+C S RKSK S +         ++ LVS+
Sbjct: 12  PIKTLVPSSVTSLTSIFLLISILSILSILAFLCASHRKSKKSTKHSAFVPHSSEKKLVSR 71

Query: 64  INSNISCKAVSMAKMLSWRRVDAADDEEGLSVDDDDDEVWRKTIIRGERCRPLEFSGKID 123
           +NS+IS KA+ MAKM+SWR+ +   +EE    +D D+ +W+KTII+GERCRPL+FSGKI+
Sbjct: 72  LNSSISSKALLMAKMMSWRKTEGGQEEE--DGEDSDEAIWKKTIIQGERCRPLDFSGKIE 131

Query: 124 YDCDGNLV 126
           YD  GN+V
Sbjct: 132 YDSKGNIV 137

[Close]

BLAST of Sed0009315 vs. ExPASy TrEMBL
Match: U5FKC5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G128700 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.5e-21
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 1   MARPIPTFLNHVPFSS---ASLIASLAALSILALVVFMCTSSRKSKISNR---------F 60
           MARP+    NH   S+   ++ IA +A LS+ +LV F+C S  K++ S R          
Sbjct: 1   MARPLLAMQNHSFLSNIPVSNFIAFIAVLSVFSLVTFLCASHHKARKSQRQGDEESVISH 60

Query: 61  EQQRNLVSKINSNISCKAVSMAKMLSWRRVDAADDEEGLSVDDDDDEVWRKTIIRGERCR 120
             ++ L+SKINS+I  KA SM KM+SWR+++  D++     DD  +E+WR++I+ GERCR
Sbjct: 61  SGEKRLLSKINSDIREKAHSMVKMISWRKLE-QDEDCDEDCDDGSEEIWRRSIVMGERCR 120

Query: 121 PLEFSGKIDYDCDGNLV 126
           PL+FSGKI YDC+GNL+
Sbjct: 121 PLDFSGKIMYDCEGNLI 136

[Close]

BLAST of Sed0009315 vs. ExPASy TrEMBL
Match: A0A2C9WM60 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G115600 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.5e-21
Identity = 58/129 (44.96%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 11  HVPFSS----ASLIASLAALSILALVVFMCTSSRKSKISNRFEQ---QRNLVSKINSNIS 70
           ++PFS+    +SL+  +   S+ ++V+F+C+S +  K+    +Q   ++ L+SKINS IS
Sbjct: 15  NLPFSATLVCSSLVFVITVFSLFSIVIFLCSSHKTKKLDRAKDQESSEKKLLSKINSGIS 74

Query: 71  CKAVSMAKMLSWRRVDAADDEEGLSVDDDDDEVWRKTIIRGERCRPLEFSGKIDYDCDGN 130
            KA SM KM+SWR++  ADD++ L   + ++ +WRKTI++GERCRPL+FSGKI+YD  GN
Sbjct: 75  SKAHSMVKMISWRKMQQADDDD-LDDYESEEAIWRKTIMKGERCRPLDFSGKIEYDAQGN 134

Query: 131 LVCHSNNTD 133
           LV  S   D
Sbjct: 135 LVPQSRCLD 142

[Close]

BLAST of Sed0009315 vs. TAIR 10
Match: AT3G18560.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49000.1); Has 95 Blast hits to 95 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.5e-04
Identity = 15/34 (44.12%), Postives = 25/34 (73.53%), Query Frame = 0


Query: 90  DDDDDEVWRKTIIRGERCRPLEFSGKIDYDCDGN 124
           D+++  VW++ I+ G +C PL++SG I YDC G+
Sbjct: 127 DEEEYGVWQREILMGGKCEPLDYSGVIYYDCSGH 160

[Close]

BLAST of Sed0009315 vs. TAIR 10
Match: AT1G49000.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 6.0e-04
Identity = 16/42 (38.10%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 84  EEGLSVDDDDDEVWRKTIIRGERCRPLEFSGKIDYDCDGNLV 126
           EE  +  +++  +W++ I+ G +C PL+FSG I YD +G L+
Sbjct: 95  EEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDSNGRLL 136

The following BLAST results are available for this feature:

BLAST of Sed0009315 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036703.1	1.7e-40	65.31	hypothetical protein SDJN02_00323, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607004.1	2.9e-40	64.43	hypothetical protein SDJN03_00346, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN57848.1	3.5e-30	54.19	hypothetical protein Csa_010872 [Cucumis sativus]	[more]
TYK22452.1	4.3e-28	55.70	hypothetical protein E5676_scaffold712G00010 [Cucumis melo var. makuwa]	[more]
XP_038906595.1	4.0e-26	56.52	uncharacterized protein LOC120092546 [Benincasa hispida]	[more]

BLAST of Sed0009315 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0009315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7R8	1.7e-30	54.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1	[more]
A0A5D3DFS8	2.1e-28	55.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A059BTL4	1.5e-21	46.09	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F02821 PE=4 SV...	[more]
U5FKC5	5.5e-21	44.53	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G128700 PE=4 ...	[more]
A0A2C9WM60	5.5e-21	44.96	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G115600 PE=4 SV=...	[more]

BLAST of Sed0009315 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18560.1	3.5e-04	44.12	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G49000.1	6.0e-04	38.10	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	F2P16.13 PROTEIN-RELATED	coord: 12..128
None	No IPR available	PANTHER	PTHR33237:SF31	PROTEIN, PUTATIVE-RELATED	coord: 12..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009315.1	Sed0009315.1	mRNA