Sed0009308 (gene) Chayote v1

Overview
NameSed0009308
Typegene
OrganismSechium edule (Chayote v1)
DescriptionLRR receptor-like serine/threonine-protein kinase
LocationLG05: 45195145 .. 45195923 (-)
RNA-Seq ExpressionSed0009308
SyntenySed0009308
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATGCAAGTAACCAAGGTATGTCTCTATTTCCTCTTTTTTTTTTTACATGCCATTGATGAAAACTTGAAGAGAAATATGTAAAATTTTGAATTATAGAAACTAAATGGAAAAATATAACCAACCATGAGTATATTAAATAGTATGTGATTGTATGTCAAAACTAATTGGTACTGGAGTTGGTAGTATATATATCTTATAAATATATTAAAATTCCTCTTGTTTTTAGTGTTGGACAATATGAGAATGAAATCAAATACTTGCTTAAGTTTTATCGACTTGGGTTTGGATTCAAATTTGTGAATCAAATAACTATTTGGAACTCTAGTTTCATTTTAAAATTTTGGTCATGAGAAAAGTAGTCATAATATCTCAAAAATGCATTGAAAACTTCTATCGCTTCGAATATGTGATAAAATAAGAATTTTTGACGCAATATATTATATAACTTAGTATTTATGAGATTATATGTTTGAATCTTTCTTCTCTCGACATTATTGAGAAAATGAAAAACATAATAGTGATTTGATGGTTTTGATGAACAGGAGGTAGAGCACAAAAATGCAAAAGGTGAAACAATGGAGAAAGTAGTAGAGACCGTAGATTATCGGACATCAGCAGGGAAACCACAGGAAAAGAGGACCGTGCAGGTTATACATCACCCCAATCCAAACACCAAGCAAGATTTCGCCACCAGCGGCGGCGTTTTGGCCGGTGCCGCGGCCGCCGTCGCAAACACCCTCCAATCTGCTCAGGAAGCCATCTCTCGCAAATAA

mRNA sequence

ATGAATATGCAAGTAACCAAGGAGGTAGAGCACAAAAATGCAAAAGGTGAAACAATGGAGAAAGTAGTAGAGACCGTAGATTATCGGACATCAGCAGGGAAACCACAGGAAAAGAGGACCGTGCAGGTTATACATCACCCCAATCCAAACACCAAGCAAGATTTCGCCACCAGCGGCGGCGTTTTGGCCGGTGCCGCGGCCGCCGTCGCAAACACCCTCCAATCTGCTCAGGAAGCCATCTCTCGCAAATAA

Coding sequence (CDS)

ATGAATATGCAAGTAACCAAGGAGGTAGAGCACAAAAATGCAAAAGGTGAAACAATGGAGAAAGTAGTAGAGACCGTAGATTATCGGACATCAGCAGGGAAACCACAGGAAAAGAGGACCGTGCAGGTTATACATCACCCCAATCCAAACACCAAGCAAGATTTCGCCACCAGCGGCGGCGTTTTGGCCGGTGCCGCGGCCGCCGTCGCAAACACCCTCCAATCTGCTCAGGAAGCCATCTCTCGCAAATAA

Protein sequence

MNMQVTKEVEHKNAKGETMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATSGGVLAGAAAAVANTLQSAQEAISRK
Homology
BLAST of Sed0009308 vs. NCBI nr
Match: XP_022947813.1 (uncharacterized protein LOC111451572 [Cucurbita moschata] >XP_023007040.1 uncharacterized protein LOC111499649 [Cucurbita maxima] >XP_023532058.1 uncharacterized protein LOC111794336 [Cucurbita pepo subsp. pepo] >KAG6605184.1 hypothetical protein SDJN03_02501, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-20
Identity = 61/83 (73.49%), Postives = 72/83 (86.75%), Query Frame = 0

Query: 1  MNMQVTKEVEHKNAKGETMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATSGG 60
          MNMQ TKEVE +NA+GE MEK VETV+YR+SAG+  EK+ VQV+H  + +T Q+FATSGG
Sbjct: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVH-STPQNFATSGG 60

Query: 61 VLAGAAAAVANTLQSAQEAISRK 84
          VLAGAAAAVANTLQSA+EAISRK
Sbjct: 61 VLAGAAAAVANTLQSAKEAISRK 82

BLAST of Sed0009308 vs. NCBI nr
Match: KAG7035166.1 (hypothetical protein SDJN02_01961, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-19
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = 0

Query: 3  MQVTKEVEHKNAKGETMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATSGGVL 62
          MQ TKEVE +NA+GE MEK VETV+YR+SAG+  EK+ VQV+H  + +T Q+FATSGGVL
Sbjct: 6  MQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVH-STPQNFATSGGVL 65

Query: 63 AGAAAAVANTLQSAQEAISRK 84
          AGAAAAVANTLQSA+EAISRK
Sbjct: 66 AGAAAAVANTLQSAKEAISRK 85

BLAST of Sed0009308 vs. NCBI nr
Match: XP_031737171.1 (uncharacterized protein LOC105434696 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 4.2e-18
Identity = 59/83 (71.08%), Postives = 71/83 (85.54%), Query Frame = 0

Query: 1  MNMQVTKEVEHKNAKGETMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATSGG 60
          MNMQ  KEVE +NA+G+ +EK VETVDYR+S G+  EKR VQV+H P+ +T ++FATSGG
Sbjct: 1  MNMQANKEVERRNAQGQ-VEKRVETVDYRSSVGQGLEKRNVQVVHLPHSST-ENFATSGG 60

Query: 61 VLAGAAAAVANTLQSAQEAISRK 84
          VLAGAAAAVANTLQSA+EAISRK
Sbjct: 61 VLAGAAAAVANTLQSAKEAISRK 81

BLAST of Sed0009308 vs. NCBI nr
Match: XP_016902934.1 (PREDICTED: uncharacterized protein LOC103501120 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 58/84 (69.05%), Postives = 71/84 (84.52%), Query Frame = 0

Query: 1  MNMQVTKEVEHKNAKGE-TMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATSG 60
          MNMQ  KEVE +NA+G+  +EK VETVDYR+S G+  EKR VQV+H P+ ++ ++FATSG
Sbjct: 1  MNMQANKEVERRNAQGQGQVEKRVETVDYRSSVGQGLEKRNVQVVHVPH-SSSENFATSG 60

Query: 61 GVLAGAAAAVANTLQSAQEAISRK 84
          GVLAGAAAAVANTLQSA+EAISRK
Sbjct: 61 GVLAGAAAAVANTLQSAKEAISRK 83

BLAST of Sed0009308 vs. NCBI nr
Match: XP_038902745.1 (uncharacterized protein LOC120089373 [Benincasa hispida])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 0

Query: 1  MNMQVTKEVEHKNAKGETMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATSGG 60
          MNMQ  KEVE +NA+G+ MEK VETVDYR+SAG+  EKR VQVIH  +P   ++FATSGG
Sbjct: 1  MNMQANKEVELRNAQGQ-MEKRVETVDYRSSAGQGLEKRNVQVIHQSHP-PAENFATSGG 60

Query: 61 VLAGAAAAVANTLQSAQEAISR 83
          VLAGAAAAVANTLQSA+EAISR
Sbjct: 61 VLAGAAAAVANTLQSAKEAISR 80

BLAST of Sed0009308 vs. ExPASy TrEMBL
Match: A0A6J1L1V6 (uncharacterized protein LOC111499649 OS=Cucurbita maxima OX=3661 GN=LOC111499649 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 61/83 (73.49%), Postives = 72/83 (86.75%), Query Frame = 0

Query: 1  MNMQVTKEVEHKNAKGETMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATSGG 60
          MNMQ TKEVE +NA+GE MEK VETV+YR+SAG+  EK+ VQV+H  + +T Q+FATSGG
Sbjct: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVH-STPQNFATSGG 60

Query: 61 VLAGAAAAVANTLQSAQEAISRK 84
          VLAGAAAAVANTLQSA+EAISRK
Sbjct: 61 VLAGAAAAVANTLQSAKEAISRK 82

BLAST of Sed0009308 vs. ExPASy TrEMBL
Match: A0A6J1G7N3 (uncharacterized protein LOC111451572 OS=Cucurbita moschata OX=3662 GN=LOC111451572 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 61/83 (73.49%), Postives = 72/83 (86.75%), Query Frame = 0

Query: 1  MNMQVTKEVEHKNAKGETMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATSGG 60
          MNMQ TKEVE +NA+GE MEK VETV+YR+SAG+  EK+ VQV+H  + +T Q+FATSGG
Sbjct: 1  MNMQATKEVERRNAQGELMEKKVETVEYRSSAGQGLEKKNVQVVHQVH-STPQNFATSGG 60

Query: 61 VLAGAAAAVANTLQSAQEAISRK 84
          VLAGAAAAVANTLQSA+EAISRK
Sbjct: 61 VLAGAAAAVANTLQSAKEAISRK 82

BLAST of Sed0009308 vs. ExPASy TrEMBL
Match: A0A1S4E3Y2 (uncharacterized protein LOC103501120 OS=Cucumis melo OX=3656 GN=LOC103501120 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.9e-18
Identity = 58/84 (69.05%), Postives = 71/84 (84.52%), Query Frame = 0

Query: 1  MNMQVTKEVEHKNAKGE-TMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATSG 60
          MNMQ  KEVE +NA+G+  +EK VETVDYR+S G+  EKR VQV+H P+ ++ ++FATSG
Sbjct: 1  MNMQANKEVERRNAQGQGQVEKRVETVDYRSSVGQGLEKRNVQVVHVPH-SSSENFATSG 60

Query: 61 GVLAGAAAAVANTLQSAQEAISRK 84
          GVLAGAAAAVANTLQSA+EAISRK
Sbjct: 61 GVLAGAAAAVANTLQSAKEAISRK 83

BLAST of Sed0009308 vs. ExPASy TrEMBL
Match: A0A0A0LNC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G427870 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.2e-16
Identity = 54/79 (68.35%), Postives = 68/79 (86.08%), Query Frame = 0

Query: 5  VTKEVEHKNAKGETMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATSGGVLAG 64
          + +EVE +NA+G+ +EK VETVDYR+S G+  EKR VQV+H P+ +T ++FATSGGVLAG
Sbjct: 10 IIQEVERRNAQGQ-VEKRVETVDYRSSVGQGLEKRNVQVVHLPHSST-ENFATSGGVLAG 69

Query: 65 AAAAVANTLQSAQEAISRK 84
          AAAAVANTLQSA+EAISRK
Sbjct: 70 AAAAVANTLQSAKEAISRK 86

BLAST of Sed0009308 vs. ExPASy TrEMBL
Match: A0A5A7VM80 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00210 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.7e-15
Identity = 53/78 (67.95%), Postives = 67/78 (85.90%), Query Frame = 0

Query: 7  KEVEHKNAKGE-TMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATSGGVLAGA 66
          +EVE +NA+G+  +EK VETVDYR+S G+  EKR VQV+H P+ ++ ++FATSGGVLAGA
Sbjct: 2  QEVERRNAQGQGQVEKRVETVDYRSSVGQGLEKRNVQVVHVPH-SSSENFATSGGVLAGA 61

Query: 67 AAAVANTLQSAQEAISRK 84
          AAAVANTLQSA+EAISRK
Sbjct: 62 AAAVANTLQSAKEAISRK 78

BLAST of Sed0009308 vs. TAIR 10
Match: AT5G67265.1 (unknown protein. )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 1  MNMQVTKEVEHKNAK--GETMEKVVETVDYRTSAGKPQEKRTVQVIHHPNPNTKQDFATS 60
          MN++ TKE+E +  K  G + + VVET + R+SAGK  E+R VQV+H  +P       TS
Sbjct: 1  MNLKSTKEMETEKRKEDGSSSKVVVETTEQRSSAGKGTEQRNVQVVHQSHPK------TS 60

Query: 61 GGVLAGAAAAVANTLQSAQEAISR 83
          G VL GAAAAV +TLQSA+E IS+
Sbjct: 61 GDVLVGAAAAVESTLQSAKEVISK 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022947813.13.4e-2073.49uncharacterized protein LOC111451572 [Cucurbita moschata] >XP_023007040.1 unchar... [more]
KAG7035166.16.4e-1972.84hypothetical protein SDJN02_01961, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_031737171.14.2e-1871.08uncharacterized protein LOC105434696 [Cucumis sativus][more]
XP_016902934.11.2e-1769.05PREDICTED: uncharacterized protein LOC103501120 [Cucumis melo][more]
XP_038902745.11.2e-1773.17uncharacterized protein LOC120089373 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1L1V61.6e-2073.49uncharacterized protein LOC111499649 OS=Cucurbita maxima OX=3661 GN=LOC111499649... [more]
A0A6J1G7N31.6e-2073.49uncharacterized protein LOC111451572 OS=Cucurbita moschata OX=3662 GN=LOC1114515... [more]
A0A1S4E3Y25.9e-1869.05uncharacterized protein LOC103501120 OS=Cucumis melo OX=3656 GN=LOC103501120 PE=... [more]
A0A0A0LNC07.2e-1668.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G427870 PE=4 SV=1[more]
A0A5A7VM802.7e-1567.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT5G67265.11.4e-1151.19unknown protein. [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009308.1Sed0009308.1mRNA