Sed0009191 (gene) Chayote v1

Overview


Name	Sed0009191
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Phytosulfokine-beta
Location	LG10: 5154777 .. 5155322 (-)
RNA-Seq Expression	Sed0009191
Synteny	Sed0009191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTAAATTCATCTCCTTTCACTTCTTACTCTTTCTCTTCCTCCTCCTTGGAAACCGGCTAACTGCCTACGCAGGCCACTCATTCCCCGCTCTTGTATCGGATGCACCAGCCACCCGAATCCCAAATCAGGTGCGTATTAAGAAAAACTTCGGTAGATTTAATTTTTCATTGCTTTTTTTAGTTGAGATTCGAATTCATGATCTTTTGATTCATGAATATAATTATTAATATTGTTGAGTTATTTTTCTAGTTGATAGTTTATAGTAACTTATTAGTATTGTGTTGTAACATTTAAACTGTCGTTTTTCTCTAATTAATATTAGGCTTAGTTTGTGACTGATTTTATTTTAGTTGTAAGAAGTTATAAACTTTTTTTATATATGGAGATTATTTGGGTTTTGTTAGGGCTTGGAGGCAGATCAAAGTAATAGTGAGATGATAGAGGAGAGGTGTAATGGAGTTGGTGAAGAAGAGTGCTTGATCAAAAGAACTCTAGTTGCCAACTTAGATTATGTATATACTCAAAAGTTTCAGCCATAA

mRNA sequence

ATGGCCTCTAAATTCATCTCCTTTCACTTCTTACTCTTTCTCTTCCTCCTCCTTGGAAACCGGCTAACTGCCTACGCAGGCCACTCATTCCCCGCTCTTGTATCGGATGCACCAGCCACCCGAATCCCAAATCAGGGCTTGGAGGCAGATCAAAGTAATAGTGAGATGATAGAGGAGAGGTGTAATGGAGTTGGTGAAGAAGAGTGCTTGATCAAAAGAACTCTAGTTGCCAACTTAGATTATGTATATACTCAAAAGTTTCAGCCATAA

Coding sequence (CDS)

ATGGCCTCTAAATTCATCTCCTTTCACTTCTTACTCTTTCTCTTCCTCCTCCTTGGAAACCGGCTAACTGCCTACGCAGGCCACTCATTCCCCGCTCTTGTATCGGATGCACCAGCCACCCGAATCCCAAATCAGGGCTTGGAGGCAGATCAAAGTAATAGTGAGATGATAGAGGAGAGGTGTAATGGAGTTGGTGAAGAAGAGTGCTTGATCAAAAGAACTCTAGTTGCCAACTTAGATTATGTATATACTCAAAAGTTTCAGCCATAA

Protein sequence

MASKFISFHFLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEERCNGVGEEECLIKRTLVANLDYVYTQKFQP

Homology

[Close]

BLAST of Sed0009191 vs. NCBI nr
Match: KAG6594959.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.4 bits (311), Expect = 4.9e-25
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MASKFISFHFLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEER 60
          MASKFI+F  L+FL LLL N  +AYA    P + SDAPAT+IPNQGLE DQS+SEM++ER
Sbjct: 1  MASKFITFLCLIFLLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDER 60

Query: 61 CNGVGEEECLIKRTLVANLDYVYTQKFQP 90
          C+GVGEEECLI+RTL A+LDYVYTQK +P
Sbjct: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89

[Close]

BLAST of Sed0009191 vs. NCBI nr
Match: XP_023003386.1 (phytosulfokines-like [Cucurbita maxima])

HSP 1 Score: 121.3 bits (303), Expect = 4.2e-24
Identity = 61/89 (68.54%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  MASKFISFHFLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEER 60
          MASKFI+F  L+FL LLL N  +AYA    P + SDAPAT+IPNQ LE DQS+SEM++ER
Sbjct: 1  MASKFITFLCLIFLLLLLSNSPSAYAARPVPTVSSDAPATQIPNQELETDQSDSEMMDER 60

Query: 61 CNGVGEEECLIKRTLVANLDYVYTQKFQP 90
          C+GVGEEECLI+RTL A+LDYVYTQK +P
Sbjct: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89

[Close]

BLAST of Sed0009191 vs. NCBI nr
Match: KAG7026920.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.2 bits (300), Expect = 9.3e-24
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1  MASKFISFHFLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEER 60
          MASKFI+F  L+FL LLL N  +AYA    P + SDAPAT+IPNQGLE DQS+SEM++ER
Sbjct: 1  MASKFITFLCLIFL-LLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDER 60

Query: 61 CNGVGEEECLIKRTLVANLDYVYTQKFQP 90
          C+GVGEEECLI+RTL A+LDYVYTQK +P
Sbjct: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 88

[Close]

BLAST of Sed0009191 vs. NCBI nr
Match: XP_023518620.1 (phytosulfokines-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.5 bits (293), Expect = 6.0e-23
Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1  MASKFISFHFLL-FLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEE 60
          MASKFI+F  L+  L LLL N  +AYA    P + SDAPAT+IPNQGLE DQS+SEM++E
Sbjct: 1  MASKFITFLSLISLLLLLLSNSPSAYAARPVPTVSSDAPATQIPNQGLETDQSDSEMMDE 60

Query: 61 RCNGVGEEECLIKRTLVANLDYVYTQKFQP 90
          RC+GVGEEECLI+RTL A+LDYVYTQK +P
Sbjct: 61 RCHGVGEEECLIRRTLAAHLDYVYTQKHKP 90

[Close]

BLAST of Sed0009191 vs. NCBI nr
Match: XP_022963144.1 (phytosulfokines 3-like [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-22
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MASKFISFHFLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEER 60
          M SKFI+F  L+FL  LL N  +AYA    P + SDAPAT+I NQGLE D+S+SEM++ER
Sbjct: 1  MGSKFITFLCLIFLLHLLSNSPSAYAARPVPTVSSDAPATQISNQGLETDESDSEMMDER 60

Query: 61 CNGVGEEECLIKRTLVANLDYVYTQKFQP 90
          C+GVGEEECLI+RTL A+LDYVYTQK +P
Sbjct: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89

[Close]

BLAST of Sed0009191 vs. ExPASy Swiss-Prot
Match: Q9M2Y0 (Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 29/82 (35.37%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 8  FHFLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEERCNGVGEE 67
          F  +  + LLL + LT      + A ++    T +  +    +    ++ EE CNG+GEE
Sbjct: 4  FTTIFIMALLLCSTLT------YAARLTPTTTTALSRENSVKEIEGDKVEEESCNGIGEE 63

Query: 68 ECLIKRTLVANLDYVYTQKFQP 90
          ECLI+R+LV + DY+YTQ  +P
Sbjct: 64 ECLIRRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of Sed0009191 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.9e-06
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 58 EERCNGVGEEECLIKRTLVANLDYVYTQKFQP 90
          +E C GVGEEECL++RTL A++DY+YTQ   P
Sbjct: 44 DEACEGVGEEECLMRRTLTAHVDYIYTQDHNP 75

[Close]

BLAST of Sed0009191 vs. ExPASy Swiss-Prot
Match: O81003 (Phytosulfokines 2 OS=Arabidopsis thaliana OX=3702 GN=PSK2 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-04
Identity = 19/40 (47.50%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 47 LEADQSNSEMIEERCNGVGEEECLIKRTLVANLDYVYTQK 87
          +E    +  M++E C G  +E+CL++RTLVA+ DY+YTQK
Sbjct: 45 IEGKLDDMHMVDENC-GADDEDCLMRRTLVAHTDYIYTQK 83

[Close]

BLAST of Sed0009191 vs. ExPASy Swiss-Prot
Match: Q9FEB4 (Phytosulfokines 5 OS=Arabidopsis thaliana OX=3702 GN=PSK5 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-04
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 10 FLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEERCNGVGEEEC 69
          FL  + LLL + LT    H+   L    P +  P +         E+I   C GVGEEEC
Sbjct: 7  FLCIIALLLCSTLT----HASARL---NPTSVYPEENSFKKLEQGEVI---CEGVGEEEC 66

Query: 70 -LIKRTLVANLDYVYTQKFQP 90
           LI+RTLVA+ DY+YTQ   P
Sbjct: 67 FLIRRTLVAHTDYIYTQNHNP 77

[Close]

BLAST of Sed0009191 vs. ExPASy TrEMBL
Match: A0A6J1KP44 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111497011 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.0e-24
Identity = 61/89 (68.54%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  MASKFISFHFLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEER 60
          MASKFI+F  L+FL LLL N  +AYA    P + SDAPAT+IPNQ LE DQS+SEM++ER
Sbjct: 1  MASKFITFLCLIFLLLLLSNSPSAYAARPVPTVSSDAPATQIPNQELETDQSDSEMMDER 60

Query: 61 CNGVGEEECLIKRTLVANLDYVYTQKFQP 90
          C+GVGEEECLI+RTL A+LDYVYTQK +P
Sbjct: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89

[Close]

BLAST of Sed0009191 vs. ExPASy TrEMBL
Match: A0A6J1HJ90 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111463441 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.5e-23
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MASKFISFHFLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEER 60
          M SKFI+F  L+FL  LL N  +AYA    P + SDAPAT+I NQGLE D+S+SEM++ER
Sbjct: 1  MGSKFITFLCLIFLLHLLSNSPSAYAARPVPTVSSDAPATQISNQGLETDESDSEMMDER 60

Query: 61 CNGVGEEECLIKRTLVANLDYVYTQKFQP 90
          C+GVGEEECLI+RTL A+LDYVYTQK +P
Sbjct: 61 CHGVGEEECLIRRTLAAHLDYVYTQKHKP 89

[Close]

BLAST of Sed0009191 vs. ExPASy TrEMBL
Match: A0A6J1ILJ9 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111478122 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.7e-13
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1  MASKFISFHFLLF-LFLLLGNRL-TAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIE 60
          M SKF SF  L+F L LLL NRL  A+A    P   S      +P QGL+ +Q++SE ++
Sbjct: 1  MPSKFFSFRCLIFLLLLLLCNRLPPAHAARPAPVFAS------LPTQGLDENQTDSENMD 60

Query: 61 ERCNGVGEEECLIKRTLVANLDYVYTQKFQP 90
          E+C+GV EEECLI+RTL A+LDYVYTQK  P
Sbjct: 61 EKCSGVSEEECLIRRTLAAHLDYVYTQKHTP 85

[Close]

BLAST of Sed0009191 vs. ExPASy TrEMBL
Match: A0A5A7T4W2 (Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003840 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-13
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 1  MASKFISFHFLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGL--EADQSNSEMIE 60
          M SKF SF F++ L L L  R  AYA    PA    AP T IP+QGL  E+ QS+ EM +
Sbjct: 1  MPSKFFSFLFIILLLLHL-YRPLAYAARPAPA----AP-TAIPSQGLAGESKQSDGEMTD 60

Query: 61 ERCNGVGEEECLIKRTLVANLDYVYTQKFQP 90
          E C+GVGEEECL++RTL A+LDYVYTQK +P
Sbjct: 61 ENCDGVGEEECLMRRTLAAHLDYVYTQKHKP 85

[Close]

BLAST of Sed0009191 vs. ExPASy TrEMBL
Match: A0A0A0KLK0 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_6G495850 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12
Identity = 53/92 (57.61%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 1  MASKFISFHFLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGL--EADQSNSEMI- 60
          M SKF SF F+ FL LLL +R  AYA    PA    AP T IP Q L  E  QS+ EM+ 
Sbjct: 1  MPSKFFSFLFIFFLLLLL-HRPLAYAARPTPA----APTT-IPTQELAEELKQSDGEMVM 60

Query: 61 EERCNGVGEEECLIKRTLVANLDYVYTQKFQP 90
          +E C+GVGEEECL++RTL A+LDYVYTQK +P
Sbjct: 61 DENCDGVGEEECLMRRTLAAHLDYVYTQKHKP 86

[Close]

BLAST of Sed0009191 vs. TAIR 10
Match: AT3G49780.1 (phytosulfokine 4 precursor )

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 29/82 (35.37%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 8  FHFLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEERCNGVGEE 67
          F  +  + LLL + LT      + A ++    T +  +    +    ++ EE CNG+GEE
Sbjct: 4  FTTIFIMALLLCSTLT------YAARLTPTTTTALSRENSVKEIEGDKVEEESCNGIGEE 63

Query: 68 ECLIKRTLVANLDYVYTQKFQP 90
          ECLI+R+LV + DY+YTQ  +P
Sbjct: 64 ECLIRRSLVLHTDYIYTQNHKP 79

[Close]

BLAST of Sed0009191 vs. TAIR 10
Match: AT2G22860.1 (phytosulfokine 2 precursor )

HSP 1 Score: 45.4 bits (106), Expect = 2.7e-05
Identity = 19/40 (47.50%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 47 LEADQSNSEMIEERCNGVGEEECLIKRTLVANLDYVYTQK 87
          +E    +  M++E C G  +E+CL++RTLVA+ DY+YTQK
Sbjct: 45 IEGKLDDMHMVDENC-GADDEDCLMRRTLVAHTDYIYTQK 83

[Close]

BLAST of Sed0009191 vs. TAIR 10
Match: AT5G65870.1 (phytosulfokine 5 precursor )

HSP 1 Score: 45.4 bits (106), Expect = 2.7e-05
Identity = 34/81 (41.98%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 10 FLLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSNSEMIEERCNGVGEEEC 69
          FL  + LLL + LT    H+   L    P +  P +         E+I   C GVGEEEC
Sbjct: 7  FLCIIALLLCSTLT----HASARL---NPTSVYPEENSFKKLEQGEVI---CEGVGEEEC 66

Query: 70 -LIKRTLVANLDYVYTQKFQP 90
           LI+RTLVA+ DY+YTQ   P
Sbjct: 67 FLIRRTLVAHTDYIYTQNHNP 77

[Close]

BLAST of Sed0009191 vs. TAIR 10
Match: AT4G37720.1 (phytosulfokine 6 precursor )

HSP 1 Score: 40.8 bits (94), Expect = 6.7e-04
Identity = 25/77 (32.47%), Postives = 40/77 (51.95%), Query Frame = 0


Query: 11 LLFLFLLLGNRLTAYAGHSFPALVSDAPATRIPNQGLEADQSN-SEMIEERCNGVGEEEC 70
          L+ + LLL   +   +    PA  +    +      LE  +S   E+  E C+   +E+C
Sbjct: 7  LITIALLLCATMLTCSARPEPAYFASFTTSPADTLSLEMIESKLHEVAGESCDKEDDEDC 66

Query: 71 LIKRTLVANLDYVYTQK 87
          L++RTL A+LDY+YT K
Sbjct: 67 LVRRTLTAHLDYIYTHK 83

The following BLAST results are available for this feature:

BLAST of Sed0009191 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594959.1	4.9e-25	69.66	Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023003386.1	4.2e-24	68.54	phytosulfokines-like [Cucurbita maxima]	[more]
KAG7026920.1	9.3e-24	69.66	Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023518620.1	6.0e-23	67.78	phytosulfokines-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963144.1	1.7e-22	65.17	phytosulfokines 3-like [Cucurbita moschata]	[more]

BLAST of Sed0009191 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2Y0	1.8e-06	35.37	Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2	[more]
Q9FS10	6.9e-06	62.50	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]
O81003	3.8e-04	47.50	Phytosulfokines 2 OS=Arabidopsis thaliana OX=3702 GN=PSK2 PE=2 SV=1	[more]
Q9FEB4	3.8e-04	41.98	Phytosulfokines 5 OS=Arabidopsis thaliana OX=3702 GN=PSK5 PE=2 SV=1	[more]

BLAST of Sed0009191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KP44	2.0e-24	68.54	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111497011 PE=3 SV=1	[more]
A0A6J1HJ90	8.5e-23	65.17	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111463441 PE=3 SV=1	[more]
A0A6J1ILJ9	4.7e-13	53.85	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111478122 PE=3 SV=1	[more]
A0A5A7T4W2	6.1e-13	57.14	Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G...	[more]
A0A0A0KLK0	1.8e-12	57.61	Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_6G495850 PE=3 SV=1	[more]

BLAST of Sed0009191 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49780.1	1.3e-07	35.37	phytosulfokine 4 precursor	[more]
AT2G22860.1	2.7e-05	47.50	phytosulfokine 2 precursor	[more]
AT5G65870.1	2.7e-05	41.98	phytosulfokine 5 precursor	[more]
AT4G37720.1	6.7e-04	32.47	phytosulfokine 6 precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 52..86 e-value: 1.0E-9 score: 39.3
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 8..89
None	No IPR available	PANTHER	PTHR33285:SF28	PHYTOSULFOKINES-LIKE	coord: 8..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009191.1	Sed0009191.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0008083	growth factor activity