Sed0009130 (gene) Chayote v1

Overview
NameSed0009130
Typegene
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
LocationLG12: 33845620 .. 33846237 (+)
RNA-Seq ExpressionSed0009130
SyntenySed0009130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATTTGGCTTACAAGGAGCAGCCACTTCTTATGATTGGGAGTTTTGTGAGCAGTATATGGAGGATATCAAATCAGTTTCTACAAGGCTTCAGGTGGATGCTATCTTGGCAGCCACCTAGGGACCATATATTGAAAATCAATACTGAAAATCTATATAGATGTGGAATTGGGGTGATTGTGCGTAACAAGAAGGGAGAGGTAATGTTCTCTTCTTGTTGAACGATTGCAGGAATTGTGGATTCAGAAATTGTCGAAGCTTTAGCGGTTCAAGAGGGAGTATCAATGGTTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACAGATGCATCTCGTGTTCCTTCTTTTCTTCAAAAATGCGAGTTTAGTAGAACTGAAGTGGGTTTTATCATAGACGAGACTTTGTCCTTAGCTGCAGCATTAACGAAGGTATCCTTTTCATGGTGTGCAAGAGATGCCAACGGTCTTGCTCATCACCTAGCTCGTATGGCAGCAGAAGAAGTTTTGAATGCTAATTGGATGGAAGATGTTCCAGAGAATCTCAGAGAAGATTACATAATTGAAATGACGAATTCTCTTGTCCAAGAAAGGGAAGAGAGTCTCCTACCTTAA

mRNA sequence

ATGAGGCATTTGGCTTACAAGGAGCAGCCACTTCTTATGATTGGGAGTTTTGTGAGCAGAATTGTGGATTCAGAAATTGTCGAAGCTTTAGCGGTTCAAGAGGGAGTATCAATGGTTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACAGATGCATCTCGTGTTCCTTCTTTTCTTCAAAAATGCGAGTTTAGTAGAACTGAAGTGGGTTTTATCATAGACGAGACTTTGTCCTTAGCTGCAGCATTAACGAAGGTATCCTTTTCATGGTGTGCAAGAGATGCCAACGGTCTTGCTCATCACCTAGCTCGTATGGCAGCAGAAGAAGTTTTGAATGCTAATTGGATGGAAGATGTTCCAGAGAATCTCAGAGAAGATTACATAATTGAAATGACGAATTCTCTTGTCCAAGAAAGGGAAGAGAGTCTCCTACCTTAA

Coding sequence (CDS)

ATGAGGCATTTGGCTTACAAGGAGCAGCCACTTCTTATGATTGGGAGTTTTGTGAGCAGAATTGTGGATTCAGAAATTGTCGAAGCTTTAGCGGTTCAAGAGGGAGTATCAATGGTTGTGGATTTGGGTTTCAGGGAGGTTGAAGTGGAAACAGATGCATCTCGTGTTCCTTCTTTTCTTCAAAAATGCGAGTTTAGTAGAACTGAAGTGGGTTTTATCATAGACGAGACTTTGTCCTTAGCTGCAGCATTAACGAAGGTATCCTTTTCATGGTGTGCAAGAGATGCCAACGGTCTTGCTCATCACCTAGCTCGTATGGCAGCAGAAGAAGTTTTGAATGCTAATTGGATGGAAGATGTTCCAGAGAATCTCAGAGAAGATTACATAATTGAAATGACGAATTCTCTTGTCCAAGAAAGGGAAGAGAGTCTCCTACCTTAA

Protein sequence

MRHLAYKEQPLLMIGSFVSRIVDSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENLREDYIIEMTNSLVQEREESLLP
Homology
BLAST of Sed0009130 vs. NCBI nr
Match: XP_021744937.1 (uncharacterized protein LOC110710901 [Chenopodium quinoa])

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-08
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 0

Query: 25  EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAAL 84
           ++VEALA++  +++ ++ GFR V +ETD  ++ + L KC    T  G I+ + L LA A 
Sbjct: 200 DVVEALAMRHALNIAIESGFRSVCLETDCLKLHNHLVKCMTPSTAFGMIVKDILQLALAC 259

Query: 85  TKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENL 125
             VSFS+  R  N +AH LA++         WMED P ++
Sbjct: 260 HHVSFSFVRRSDNRVAHELAKLCISFNELRVWMEDFPSDV 299

BLAST of Sed0009130 vs. NCBI nr
Match: XP_021747929.1 (uncharacterized protein LOC110713793 [Chenopodium quinoa])

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-08
Identity = 37/115 (32.17%), Postives = 68/115 (59.13%), Query Frame = 0

Query: 23  DSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAA 82
           D++I EA+A++  +S+V++ GFR V +ETD  ++ S L K     T  G II++ + LA 
Sbjct: 75  DADIAEAIAMRHALSIVIESGFRNVCMETDCLKLHSHLIKRNTLATTFGSIINDIIHLAR 134

Query: 83  ALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENLREDYIIEMTNSLV 138
           +     FS+  R+ N ++H LA++ +  V    W+E+VP ++ E  + +  + L+
Sbjct: 135 SCQSCYFSFVKREGNQVSHALAKLCSSFVSFRVWIEEVPSHIAEIVMADRRSLLI 189

BLAST of Sed0009130 vs. NCBI nr
Match: KAG2565207.1 (hypothetical protein PVAP13_7NG002334 [Panicum virgatum])

HSP 1 Score: 68.2 bits (165), Expect = 6.9e-08
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 0

Query: 16  SFVSRIVDSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIID 75
           S++S ++D+ + EA A+++G+ +   +G   V+++ D   V   + +  +S T +  I D
Sbjct: 350 SYISNVLDAHMAEASAMRDGLLLAQQIGSSRVQIQADCMEVVDTMLEGGYSATALAAIYD 409

Query: 76  ETLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENLREDYIIEMT 134
           E   L      +S S C R++N +AH LAR A  E  +  W++D P ++R+  +  +T
Sbjct: 410 ECSKLWEDFDAISISHCNRESNVVAHELARQAMLEKNSCVWIDDPPASIRQSLVSNVT 467

BLAST of Sed0009130 vs. NCBI nr
Match: XP_023892531.1 (uncharacterized protein LOC112004513 [Quercus suber])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = 0

Query: 24  SEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAA 83
           +EI+EALA +  VS  ++LGF +   E D+  +   L   +FS   VG II +  S++  
Sbjct: 80  AEILEALAARRAVSFTMELGFNQSMFEGDSEVIIKALNAKDFSLASVGHIIKDIRSMSGL 139

Query: 84  LTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENL 125
           L   SFS+  R  N +AH LA+ A        WMEDVP N+
Sbjct: 140 LQTKSFSFVRRQGNSVAHTLAKRARFSFPVLVWMEDVPPNI 180

BLAST of Sed0009130 vs. NCBI nr
Match: KAF5945963.1 (hypothetical protein HYC85_016191 [Camellia sinensis])

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-07
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 0

Query: 22  VDSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLA 81
           VDS+  EA A  + V +  DLGF ++ +E D+ R+   L++     +E G I+ +T+   
Sbjct: 716 VDSDCAEAYAATKAVELARDLGFSDIHLEGDSLRIVKALREEAEFMSEYGHILLQTVGAC 775

Query: 82  AALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENL 125
            + ++   S   R  NGLAH LARMA  +     WM D+P +L
Sbjct: 776 KSFSRFHVSHVGRQGNGLAHGLARMARHQNYQQVWMGDLPASL 818

BLAST of Sed0009130 vs. ExPASy TrEMBL
Match: A0A803KQ76 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.7e-09
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 0

Query: 17  FVSRIVDSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDE 76
           F + ++++++ EALA +  +S+ +D GF  V +ET+  ++ S L K     TE+G I+ +
Sbjct: 11  FRASLINADVAEALAARHTLSVTLDSGFSRVCIETECLKLYSHLSKHRVPPTELGSIVSD 70

Query: 77  TLSLAAALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENLREDY 129
            L LA      SFS+  R  N +AH LA++ +       WME+VP  + E Y
Sbjct: 71  ILQLARGCLSCSFSFVKRSGNRVAHELAKLCSSFESLRVWMEEVPYGVSELY 122

BLAST of Sed0009130 vs. ExPASy TrEMBL
Match: A0A2N9EK22 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2801 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 40/105 (38.10%), Postives = 55/105 (52.38%), Query Frame = 0

Query: 25   EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAAL 84
            E +EA A +  V  V ++G +E E E D+  + + L       T  G +I +  SLA AL
Sbjct: 1270 ESIEAWAAKRAVQFVSEIGLKEAEFEGDSKTIVAALNDPHHCPTHYGLLIADAKSLAHAL 1329

Query: 85   TKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENLREDYI 130
                F+   R  NGLAH LARMA    +   WMEDVP  L++ Y+
Sbjct: 1330 DSYCFTHVKRQGNGLAHALARMAKHTDILEVWMEDVPPPLQQLYL 1374

BLAST of Sed0009130 vs. ExPASy TrEMBL
Match: A0A803MB59 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-08
Identity = 36/113 (31.86%), Postives = 66/113 (58.41%), Query Frame = 0

Query: 23  DSEIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAA 82
           D ++ EALA++  +++ +DLGFR+V +ETD  ++ S L K     T +G ++++ + LA 
Sbjct: 63  DVDVAEALALRHALNISLDLGFRKVCLETDCLKLHSHLSKGNAPSTVIGMVVNDIIQLAR 122

Query: 83  ALTKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENLREDYIIEMTNS 136
                SFS+  R  N +AH LA++++  V     ME+VP  +    + ++ +S
Sbjct: 123 GCHSCSFSFVKRSGNCVAHELAKLSSSFVELRVLMEEVPSGISSFVMADLASS 175

BLAST of Sed0009130 vs. ExPASy TrEMBL
Match: A0A2N9GYK3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32597 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-08
Identity = 40/105 (38.10%), Postives = 55/105 (52.38%), Query Frame = 0

Query: 25   EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAAL 84
            E +EA A +  V  V ++G +E E E D+  + + L       T  G +I +  SLA AL
Sbjct: 1510 ENIEAWAAKRAVQFVSEIGLKEAEFEGDSKTIVAALNDPHHCPTHYGLLIADAKSLAHAL 1569

Query: 85   TKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENLREDYI 130
                F+   R  NGLAH LARMA    +   WMEDVP  L++ Y+
Sbjct: 1570 DSYCFTHVKRQGNGLAHALARMAKHTDILEVWMEDVPPPLQQLYL 1614

BLAST of Sed0009130 vs. ExPASy TrEMBL
Match: A0A2N9EQW7 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4942 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.7e-08
Identity = 39/102 (38.24%), Postives = 53/102 (51.96%), Query Frame = 0

Query: 25   EIVEALAVQEGVSMVVDLGFREVEVETDASRVPSFLQKCEFSRTEVGFIIDETLSLAAAL 84
            E +EA A +  V  V ++G +E E E D+  + + L       T  G +I +  SLA AL
Sbjct: 1097 ENIEAWAAKRAVQFVSEIGLKEAEFEGDSKTIVAALNDPHHCPTHYGLLIADAKSLAHAL 1156

Query: 85   TKVSFSWCARDANGLAHHLARMAAEEVLNANWMEDVPENLRE 127
                F+   R  NGLAH LARMA    +   WMEDVP  L++
Sbjct: 1157 DSYCFTHVKRQGNGLAHALARMAKHTDILEVWMEDVPPPLQQ 1198

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021744937.14.0e-0837.00uncharacterized protein LOC110710901 [Chenopodium quinoa][more]
XP_021747929.15.2e-0832.17uncharacterized protein LOC110713793 [Chenopodium quinoa][more]
KAG2565207.16.9e-0828.81hypothetical protein PVAP13_7NG002334 [Panicum virgatum][more]
XP_023892531.11.2e-0738.61uncharacterized protein LOC112004513 [Quercus suber][more]
KAF5945963.14.4e-0734.95hypothetical protein HYC85_016191 [Camellia sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803KQ766.7e-0933.93Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A2N9EK221.9e-0838.10Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2801 PE=4 SV=1[more]
A0A803MB592.5e-0831.86Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
A0A2N9GYK32.5e-0838.10Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32597 PE=4 SV=1[more]
A0A2N9EQW79.7e-0838.24Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 18..107
e-value: 7.9E-14
score: 51.5
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 8..114
e-value: 9.8E-9
score: 37.2
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 28..105
e-value: 2.74761E-11
score: 55.0128
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 18..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0009130.1Sed0009130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity