Sed0009021 (gene) Chayote v1

Overview


Name	Sed0009021
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Loricrin-like
Location	LG05: 41718000 .. 41718230 (-)
RNA-Seq Expression	Sed0009021
Synteny	Sed0009021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGCCAATTGTTGCCGCCGCACACGGCGGCTTCGGAGATGTTACCTGGCTGAGCTCCGGCGGGCTGTTTATGCTTTCGGCCATTCTTCTATCCATCTCTCTCATATCAATGATCATATTTGCTTGCGGCAGCTCTGATGGCTCGAAAAGTAAAAGAGATGGCGGCGGTGGAGGTTGCGGCGGCGGCGGTGGGGGCTGCGGTGGATGCGGTGGCTGTGGCGGCTGA

mRNA sequence

ATGGCAAGGCCAATTGTTGCCGCCGCACACGGCGGCTTCGGAGATGTTACCTGGCTGAGCTCCGGCGGGCTGTTTATGCTTTCGGCCATTCTTCTATCCATCTCTCTCATATCAATGATCATATTTGCTTGCGGCAGCTCTGATGGCTCGAAAAGTAAAAGAGATGGCGGCGGTGGAGGTTGCGGCGGCGGCGGTGGGGGCTGCGGTGGATGCGGTGGCTGTGGCGGCTGA

Coding sequence (CDS)

ATGGCAAGGCCAATTGTTGCCGCCGCACACGGCGGCTTCGGAGATGTTACCTGGCTGAGCTCCGGCGGGCTGTTTATGCTTTCGGCCATTCTTCTATCCATCTCTCTCATATCAATGATCATATTTGCTTGCGGCAGCTCTGATGGCTCGAAAAGTAAAAGAGATGGCGGCGGTGGAGGTTGCGGCGGCGGCGGTGGGGGCTGCGGTGGATGCGGTGGCTGTGGCGGCTGA

Protein sequence

MARPIVAAAHGGFGDVTWLSSGGLFMLSAILLSISLISMIIFACGSSDGSKSKRDGGGGGCGGGGGGCGGCGGCGG

Homology

[Close]

BLAST of Sed0009021 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.1 bits (196), Expect = 9.1e-12
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MARPIVAAA--HGGFGDVTWLSSGGLFMLSAILLSISLISMIIFACGSSDGSKSKRDGG- 60
          M RPI+AAA   GGF DVT +SSGGLF+LSAILLSISL+SMIIFACG+S+  K K  GG 
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGGG 60

Query: 61 -GGGCGGGGGGC-GGCGGCGG 77
           GGG GGGGGGC GGCGGCGG
Sbjct: 61 CGGGDGGGGGGCGGGCGGCGG 81

[Close]

BLAST of Sed0009021 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-11
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1  MARPIVAAAHGGFGDVTWLSSGGLFMLSAILLSISLISMIIFACG-SSDGSKSKRDGGGG 60
          M RPI AA  GG GDVT  SSGGL +L+ IL+S+SL+SMIIFACG SS  +K KR+GGGG
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKRKRNGGGG 60

Query: 61 GCGGGGGGCGGCGGC 75
          G G GGGGCGG GGC
Sbjct: 61 GAGCGGGGCGGGGGC 75

[Close]

BLAST of Sed0009021 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 6.1e-08
Identity = 55/97 (56.70%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 1  MARPIVAAAHGGFGDVTWLSSGGLFMLSAILLSISLISMIIFACG-SSDGSKSKRD---- 60
          M R I AA  GG GDVT  SSGGL +L+ +LLS+SL+SMIIFACG SS  +K KR+    
Sbjct: 1  MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGGGC 60

Query: 61 ------------GGGGGCGGGGGGCGGC----GGCGG 77
                      GGGGGCGGGGGGCGG     GGCGG
Sbjct: 61 GGGGGGGCGGDVGGGGGCGGGGGGCGGVAGGGGGCGG 97

[Close]

BLAST of Sed0009021 vs. NCBI nr
Match: ONI16710.1 (hypothetical protein PRUPE_3G116900 [Prunus persica])

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 1  MARPIVAAAHGGFGDVTWL---SSGGLFMLSAILLSISLISMIIFACGSSDGSKSKRDG- 60
          MAR       GG  +   +   +SGG+F+L  ILLS+SLISM+IFACG  +GS  KR G 
Sbjct: 1  MARGTYVVLGGGHAEELGIMQDNSGGIFLLCMILLSLSLISMVIFACGDDEGSSKKRYGG 60

Query: 61 ---GGGGCGGGGGGC 69
             GGGGCGGGGGGC
Sbjct: 61 RGSGGGGCGGGGGGC 75

[Close]

BLAST of Sed0009021 vs. NCBI nr
Match: KAB2611902.1 (loricrin-like [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1  MARPIVAAAHGGFGDVTWL----SSGGLFMLSAILLSISLISMIIFACGSSDGSKSKRDG 60
          M R  V    G  G+V  +    +SGGL +L  IL+S+SLISM+IFACG   GS +KR G
Sbjct: 1  MGRTYVGVGGGHAGEVGIVMPDHNSGGLLLLCMILMSLSLISMVIFACGDHKGSNNKRRG 60

Query: 61 GGGGCGGGGGGCGGCGGCGG 77
          GG  CGGGGGGCGG   CGG
Sbjct: 61 GGAACGGGGGGCGGGTACGG 80

[Close]

BLAST of Sed0009021 vs. ExPASy TrEMBL
Match: M5WY52 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G116900 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-05
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 1  MARPIVAAAHGGFGDVTWL---SSGGLFMLSAILLSISLISMIIFACGSSDGSKSKRDG- 60
          MAR       GG  +   +   +SGG+F+L  ILLS+SLISM+IFACG  +GS  KR G 
Sbjct: 1  MARGTYVVLGGGHAEELGIMQDNSGGIFLLCMILLSLSLISMVIFACGDDEGSSKKRYGG 60

Query: 61 ---GGGGCGGGGGGC 69
             GGGGCGGGGGGC
Sbjct: 61 RGSGGGGCGGGGGGC 75

[Close]

BLAST of Sed0009021 vs. ExPASy TrEMBL
Match: A0A5N5GEI7 (Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_019934 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.2e-05
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 1  MARPIVAAAHGGFGDVTWL----SSGGLFMLSAILLSISLISMIIFACGSSDGSKSKRDG 60
          M R  V    G  G+V  +    +SGGL +L  IL+S+SLISM+IFACG   GS +KR G
Sbjct: 1  MGRTYVGVGGGHAGEVGIVMPDHNSGGLLLLCMILMSLSLISMVIFACGDHKGSNNKRRG 60

Query: 61 GGGGCGGGGGGCGGCGGCGG 77
          GG  CGGGGGGCGG   CGG
Sbjct: 61 GGAACGGGGGGCGGGTACGG 80

[Close]

BLAST of Sed0009021 vs. ExPASy TrEMBL
Match: A0A061DKB8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001723 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.4e-04
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 1  MARPIVAAAHGGFGDVTWLSSGGLFMLSAILLSISLISMIIFACGSSDGSKSKRD--GGG 60
          MAR +V     G G    + SGGLF+L  I+ S+S+ISM+IFACG ++  K + +   GG
Sbjct: 1  MARELVNLGGSGAGGEAGV-SGGLFLLCMIVFSLSIISMVIFACGDNNSGKPRHNHGAGG 60

Query: 61 GGCGGGGGGCGGCGG 74
          GGCG GGGGCGGCGG
Sbjct: 61 GGCGCGGGGCGGCGG 74

[Close]

BLAST of Sed0009021 vs. ExPASy TrEMBL
Match: A0A540MXA9 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010997 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 46/80 (57.50%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1  MARPIVAAAHGGFGDVTWL----SSGGLFMLSAILLSISLISMIIFACGSSDGSKSKRDG 60
          MAR  V    G  G+V  +    +SGGL +L  IL+S+SLISM+IFACG S GS   R  
Sbjct: 1  MARTYVGLGGGHAGEVAIMMPDHNSGGLLLLCMILMSLSLISMVIFACGDSSGSPRPRP- 60

Query: 61 GGGGCGGGGGGCGGCGGCGG 77
          GGGG GGGGGGCGG GG GG
Sbjct: 61 GGGGWGGGGGGCGGGGGGGG 79

[Close]

BLAST of Sed0009021 vs. ExPASy TrEMBL
Match: A0A0A0LJD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.8e-04
Identity = 47/79 (59.49%), Postives = 53/79 (67.09%), Query Frame = 0


Query: 1  MARPIVAAAHGGFGDVTWLSSGGLFMLSAILLSISLISMIIFACGSSDGSKSKR---DGG 60
          M RPI A      GDVT    GGL +LS ILLSISL+SMIIFAC +   ++ +R   DGG
Sbjct: 1  MGRPIAAT----IGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGG 60

Query: 61 GGGCGGGGGGCGGCGGCGG 77
           GGC  GGGGCGG GGCGG
Sbjct: 61 AGGCACGGGGCGG-GGCGG 74

The following BLAST results are available for this feature:

BLAST of Sed0009021 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604774.1	9.1e-12	74.07	hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6603229.1	7.7e-11	69.33	hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6603228.1	6.1e-08	56.70	hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori...	[more]
ONI16710.1	2.8e-05	54.67	hypothetical protein PRUPE_3G116900 [Prunus persica]	[more]
KAB2611902.1	1.1e-04	55.00	loricrin-like [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of Sed0009021 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0009021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5WY52	1.4e-05	54.67	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G116900 PE=4 SV=1	[more]
A0A5N5GEI7	5.2e-05	55.00	Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_019934 P...	[more]
A0A061DKB8	3.4e-04	53.33	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001723 PE=4 SV=1	[more]
A0A540MXA9	4.4e-04	57.50	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_010997 PE=4 SV=1	[more]
A0A0A0LJD5	5.8e-04	59.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1	[more]

BLAST of Sed0009021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..76
None	No IPR available	PANTHER	PTHR35420	OS02G0198500 PROTEIN	coord: 1..76
None	No IPR available	PANTHER	PTHR35420:SF5	SUBFAMILY NOT NAMED	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009021.1	Sed0009021.1	mRNA