Sed0009016 (gene) Chayote v1

Overview


Name	Sed0009016
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RRM domain-containing protein
Location	LG05: 3203826 .. 3206826 (+)
RNA-Seq Expression	Sed0009016
Synteny	Sed0009016

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGGTATTCCGTTCTTTTTCCCCTTTTCTTCAATCTCCAATCTCCAATCTCTAGGGTTTTCACTGATGGCACCGGAATCGACCTGTTTCATGTTGCTTATTGAAACCCTTCTTTCTTGTAAGGATTCCGTTTTGATTTTGAATTTCTGTGTTGAAAGTTAAGCTCGTTTCGATTAGCATCCAGTTATTTGAAATAGTTTGGTTTTTGATTTGATTTGGTAGGATCGCTGATTTTCTGTGATAAGTGCTCTTATTGGAGTCTGTAGCTATGGATTTATGATCTGAGTTTGTTCCTCATAAACATTAAATCTGCTGTAATTAGGTTTTGTTTTATATTTATTGGGAGAAGAATGAGAGGAAAGTTCTGTTGGCATTTTGTATCGTAGTTTCTATATGGCTATATCAAAAAACCATCATGGAGTGTCTTAGAGGTGAAGAGGGCCGTGGAGGGTGATGGGTATCCTTCGCGGTCATCTACTAGAAATTAATTTTTTAATCGATTTCTCAACATCCAAATGTTGTAGAGCCCGACAAAGTTACCGATGTGTGAAATGGAATGTGTATCGAGATGAGCATAAATTAGCTCAGGTTGTCATGGATACAAAAAAAGCATGGCCTTTTGTAATCCCGTTTCTTCTAACTAATATTAGGGACTTAAAAGTAGAGAAGCATTGTATCACTCACGATTTTGGTTCATATTTGGATCAGAGAAGGTCAGCTCTTCGTTACTAGAACCTTCCTTGGCAGGGACAGAGGTCAAGCGAAGAATTGCAACCATTTTAATACCAGTACATATTTAATGAATGTGATCCTTTTTTGGGTTTTTTTTACCTTTGTATATTGTTGGGAAAGAATGAATACTTTGGAAAGTAGATTAGATTAGATTTGAGGGCGAGCGTGGGGGTTAGACGGTACTAAAGGGTAGTTGGCCTTTAAATTATTGTGAAAATATACAAGATACAATCATCGTGGAATAGGCTGGTGGTCAATAAGAGTCTTAAGTAATCAAGAAGTGATGAGTTCAATCTATGGTGACCACCTAAATTTTTTATGAGATTCCTTGACATCCAAATGTTGTAACTTGTAAGGTTCGACAGTATGTCCTATGAAAATAGTCGAGGTAGGCATAAATTGGCCTAGACACTCACGAAAAGAAAAAAAAGTACTAGATATGATTAAATTGAAGGTTTGCTCCAAGCTTATCTTGTCAATACATGAGTTATCTTAATTTATTTTCAGAATGTGTTTGGTGTTATGTTTTGGTTTTATATTAAAAACTTCAAACATAATTTTCGAGTGTCTCCAACTATCATGTCTTGTTGCTTTAATTTAATTAAGTATTAATTCCTTACATCCAATTGCATGTTTCAAAACAAGAAATATTATTGAAGTTCTATTCTATACAAATTTGTGCAGATATGATGTGAAGTCCAGAAATCATAATTATCTCTTTACTTTGTGGAATTGAACTTGTGACTGGCTAACTTATGCCTATGGTATACTCCAGATCCTATATTTATGCATCCACTTCTTTTCTACAATTTATTCTTTAGATGCTCGACTCCCAATATATCTTATATACACATATTTTCTTTCCTTTTTTTGTTTGTTTTGAATCCCTCATTTATAGTCATGTAGACATTTTTTTTAGCTGTGATGATATAACACTTTGTAAAACATACCAACAAGAGTTGAGCATGATGTGTAATTTGATAACCAAGAGGTTACGAGTTTGAGTCTCCCAAATGTTCTTTAAATTAAAAAAAAAAAGAAGAAGCTGTGTATAACACTGATTATATGACTGCTGCAGGATTCATGTGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGGATTACAGAGTAAGAAAAACTATTGTCCCAGCAGCATCTGCAATGTATTTGTCTTCCAGTTTTGCTCTCCTATATTGAAATTTGAATCAACTTGTTTCAGAGCGGTTCTCATTAAAATGTTCTCACCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGTCCGAAGCGTGGGGAGCCACGCGGATTTGCTTTCATTGAATACAGCTCCAAGGAGGTAAGTTGCTTGGTTTATGTAAGGTATCCAACTCCAGAAATCAACCAAAACAGTAAACAAATATTGAAAAACAGTAAAATATGAACTATATTGCAATCTCAAGGAGGAAATTATGATATCATAGCCATTAGAGAGGGCTAGAGCTCTCCCAGTCAATCCACCATGGAAAGAGTACCCAAATAAGACCCACTTTCCACAAACCTTACCTCCACTATTTATAATAGGGATTCTCTACTAGTTACCAAAATACCCTTAAACGGGTCTCTCACAGTTTACTACTTCATAGCCTCTGTTAAGCAGTTTCTTATTTCTGCTTGTAAAGTGAGTATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTCGCGGTCGTCCATTGGTCGTACGCCTTGCAAGCGAGAAGCTCACGATTAACACAACGAAGGATAGTTCAAGAGAAGCTGGCGAGTCGAGCAAATCGAGACTCGGTGGCAGCAATTACGGACAGATGACTCGCAGCGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCCTTGGAAGGAGGAGGGGAAGGCTCTAGTGTGAAAAAACAGAAGCAAGATCACATCAGTTGCAGAGATAATGTTGATAAGTCATCACTCAAAACATCTTGATGCTGAAGGAAACTGTGAAATTGGTAGGTTGTATTTACTCAAATCTATTTTACTGTTACTAAACCTGTTTAGGAAAATCTGATTAAGCTTTAATATGATGCTGACAAACTGTTGCATTGTTTGGATGTTTGAGAGAAAAACTGTGGAAGTATTTGGAATTTATATCCTATGGTTATTAGGTGCAGGTAAATTTTCAAATCCGTGCCCAATAAATTGTTAAAAGGCAACTATGATCATTTGTCGAAGTTTATT

mRNA sequence

ATTTTGGTATTCCGTTCTTTTTCCCCTTTTCTTCAATCTCCAATCTCCAATCTCTAGGGTTTTCACTGATGGCACCGGAATCGACCTGTTTCATGTTGCTTATTGAAACCCTTCTTTCTTATATGATGTGAAGTCCAGAAATCATAATTATCTCTTTACTTTGTGGAATTGAACTTGTGACTGGCTAACTTATGCCTATGGATTCATGTGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGGATTACAGAAGCGGTTCTCATTAAAATGTTCTCACCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGTCCGAAGCGTGGGGAGCCACGCGGATTTGCTTTCATTGAATACAGCTCCAAGGAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTCGCGGTCGTCCATTGGTCGTACGCCTTGCAAGCGAGAAGCTCACGATTAACACAACGAAGGATAGTTCAAGAGAAGCTGGCGAGTCGAGCAAATCGAGACTCGGTGGCAGCAATTACGGACAGATGACTCGCAGCGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCCTTGGAAGGAGGAGGGGAAGGCTCTAGTGTGAAAAAACAGAAGCAAGATCACATCAGTTGCAGAGATAATGTTGATAAGTCATCACTCAAAACATCTTGATGCTGAAGGAAACTGTGAAATTGGTAGGTTGTATTTACTCAAATCTATTTTACTGTTACTAAACCTGTTTAGGAAAATCTGATTAAGCTTTAATATGATGCTGACAAACTGTTGCATTGTTTGGATGTTTGAGAGAAAAACTGTGGAAGTATTTGGAATTTATATCCTATGGTTATTAGGTGCAGGTAAATTTTCAAATCCGTGCCCAATAAATTGTTAAAAGGCAACTATGATCATTTGTCGAAGTTTATT

Coding sequence (CDS)

ATGCCTATGGATTCATGTGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGCAATCTTGACCTCAGGATTACAGAAGCGGTTCTCATTAAAATGTTCTCACCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGTCCGAAGCGTGGGGAGCCACGCGGATTTGCTTTCATTGAATACAGCTCCAAGGAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTCGCGGTCGTCCATTGGTCGTACGCCTTGCAAGCGAGAAGCTCACGATTAACACAACGAAGGATAGTTCAAGAGAAGCTGGCGAGTCGAGCAAATCGAGACTCGGTGGCAGCAATTACGGACAGATGACTCGCAGCGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCCTTGGAAGGAGGAGGGGAAGGCTCTAGTGTGAAAAAACAGAAGCAAGATCACATCAGTTGCAGAGATAATGTTGATAAGTCATCACTCAAAACATCTTGA

Protein sequence

MPMDSCGFVDEKCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLARGRPLVVRLASEKLTINTTKDSSREAGESSKSRLGGSNYGQMTRSDKIAAIKNKLRALEGGGEGSSVKKQKQDHISCRDNVDKSSLKTS

Homology

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BLAST of Sed0009016 vs. NCBI nr
Match: XP_022157813.1 (probable RNA-binding protein 18 isoform X3 [Momordica charantia])

HSP 1 Score: 290.4 bits (742), Expect = 1.0e-74
Identity = 155/175 (88.57%), Postives = 159/175 (90.86%), Query Frame = 0


Query: 1   MPMDSCGFVDEKCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           M MDS GFVDEKCESKLYIGNLDLRITEA LIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60

Query: 61  FAFIEYSSKEEAKLAKEKMHGKLARGRPLVVRLASEKLTINTTKDSSREAGESSKSRLGG 120
           FAFIEYSSKEEAKLAKEKMHGKLA GRPLVVRLASEK  I+TTK  SR AGESSKSRLGG
Sbjct: 61  FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 120

Query: 121 SNYGQMTRSDKIAAIKNKLRALEGGGEGSS--VKKQKQDHISCRDNVDKSSLKTS 174
           SNYGQMTR+DKIAAIKNKLRALEG  E SS  VKKQKQD+ISCRDN+DK  LKTS
Sbjct: 121 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDK-PLKTS 174

[Close]

BLAST of Sed0009016 vs. NCBI nr
Match: XP_022157798.1 (probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1 probable RNA-binding protein 18 isoform X1 [Momordica charantia])

HSP 1 Score: 290.4 bits (742), Expect = 1.0e-74
Identity = 155/175 (88.57%), Postives = 159/175 (90.86%), Query Frame = 0


Query: 1   MPMDSCGFVDEKCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           M MDS GFVDEKCESKLYIGNLDLRITEA LIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 50  MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 109

Query: 61  FAFIEYSSKEEAKLAKEKMHGKLARGRPLVVRLASEKLTINTTKDSSREAGESSKSRLGG 120
           FAFIEYSSKEEAKLAKEKMHGKLA GRPLVVRLASEK  I+TTK  SR AGESSKSRLGG
Sbjct: 110 FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 169

Query: 121 SNYGQMTRSDKIAAIKNKLRALEGGGEGSS--VKKQKQDHISCRDNVDKSSLKTS 174
           SNYGQMTR+DKIAAIKNKLRALEG  E SS  VKKQKQD+ISCRDN+DK  LKTS
Sbjct: 170 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDK-PLKTS 223

[Close]

BLAST of Sed0009016 vs. NCBI nr
Match: XP_008437528.1 (PREDICTED: probable RNA-binding protein 18 [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74
Identity = 148/171 (86.55%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 3   MDSCGFVDEKCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 62
           MDS GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 1   MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 60

Query: 63  FIEYSSKEEAKLAKEKMHGKLARGRPLVVRLASEKLTINTTKDSSREAGESSKSRLGGSN 122
           FIEYSSKEEAKLAKEKMHGKLA GRPLVVRLASEKL +NT  D+S+ A ES KSRLGGS+
Sbjct: 61  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSS 120

Query: 123 YGQMTRSDKIAAIKNKLRALEGGGEGSSVKKQKQDHISCRDNVDKSSLKTS 174
           YGQ+TRSDKIAAIKNKLRALEGGGE SSVKK KQD+IS +D++DKS LKTS
Sbjct: 121 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 171

[Close]

BLAST of Sed0009016 vs. NCBI nr
Match: XP_011654647.1 (probable RNA-binding protein 18 isoform X2 [Cucumis sativus] >KAE8647815.1 hypothetical protein Csa_000614 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 3.8e-74
Identity = 150/171 (87.72%), Postives = 157/171 (91.81%), Query Frame = 0


Query: 3   MDSCGFVDEKCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 62
           MDS GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 1   MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 60

Query: 63  FIEYSSKEEAKLAKEKMHGKLARGRPLVVRLASEKLTINTTKDSSREAGESSKSRLGGSN 122
           FIEYSSKEEAKLAKEKMHGKLA GRPLVVRLASEKL  NTT D+SR A ES KSRLGGS+
Sbjct: 61  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMTNTTNDTSRTASESRKSRLGGSS 120

Query: 123 YGQMTRSDKIAAIKNKLRALEGGGEGSSVKKQKQDHISCRDNVDKSSLKTS 174
           YGQ+TRSDKIAAIKNKLRALEGGGE SSVKK KQD+IS +D+ DKSSLK S
Sbjct: 121 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISYKDHNDKSSLKPS 171

[Close]

BLAST of Sed0009016 vs. NCBI nr
Match: KAA0042597.1 (putative RNA-binding protein 18 [Cucumis melo var. makuwa])

HSP 1 Score: 287.3 bits (734), Expect = 8.5e-74
Identity = 147/170 (86.47%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 4   DSCGFVDEKCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63
           DS GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 34  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 93

Query: 64  IEYSSKEEAKLAKEKMHGKLARGRPLVVRLASEKLTINTTKDSSREAGESSKSRLGGSNY 123
           IEYSSKEEAKLAKEKMHGKLA GRPLVVRLASEKL +NT  D+S+ A ES KSRLGGS+Y
Sbjct: 94  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSY 153

Query: 124 GQMTRSDKIAAIKNKLRALEGGGEGSSVKKQKQDHISCRDNVDKSSLKTS 174
           GQ+TRSDKIAAIKNKLRALEGGGE SSVKK KQD+IS +D++DKS LKTS
Sbjct: 154 GQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 203

[Close]

BLAST of Sed0009016 vs. ExPASy Swiss-Prot
Match: Q6PBM8 (Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.1e-15
Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 16  KLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 75
           +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+PRG+ F+ + +KEEA+ A
Sbjct: 24  RLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERA 83

Query: 76  KEKMHGKLARGRPLVVRLAS----EKLTINTTKDSSREAGESSKSRLGGSNYGQMTRSDK 135
            + ++GKLA  + LVVR A     E         +S E   S    L  S    ++ + K
Sbjct: 84  IQCLNGKLALSKKLVVRWAHAQRFEPFRGEKNMPASLEPSSSEAEDLPTS----LSVNAK 143

Query: 136 IAAIKNKLRALE 144
           I AI+ KL+ +E
Sbjct: 144 IRAIEAKLQMME 151

[Close]

BLAST of Sed0009016 vs. ExPASy Swiss-Prot
Match: Q66J99 (Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-14
Identity = 53/157 (33.76%), Postives = 86/157 (54.78%), Query Frame = 0


Query: 1   MPMDSCGFVDE---KCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGE 60
           +P+++   + E   +   +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+
Sbjct: 8   LPLENASILSEGSLQDGHRLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQ 67

Query: 61  PRGFAFIEYSSKEEAKLAKEKMHGKLARGRPLVVRLA-----------SEK-LTINTTKD 120
           PRG+ F+ + +K EA+ A   ++GK+A  + LVVR A           +EK L I+    
Sbjct: 68  PRGYCFVNFETKAEAERAIHCLNGKMALSKKLVVRWAHAQIKRYDNCKNEKVLPISLEPS 127

Query: 121 SSREAGESSKSRLGGSNYGQMTRSDKIAAIKNKLRAL 143
           SS E  +S+           ++ S KI AI+ KL+ +
Sbjct: 128 SSTEPTQST-----------LSVSAKIKAIEAKLKMM 153

[Close]

BLAST of Sed0009016 vs. ExPASy Swiss-Prot
Match: Q9CR83 (Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-13
Identity = 49/139 (35.25%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 16  KLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 75
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 76  KEKMHGKLARGRPLVVRLASEK------------LTINTTKDSSREAGESSKSRLGGSNY 135
            + ++GKLA  + LVVR A  +            L I+    SS E  +S+         
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPAQSN--------- 145

Query: 136 GQMTRSDKIAAIKNKLRAL 143
             ++ + KI AI+ KL+ +
Sbjct: 146 --LSVTAKIKAIEAKLKMM 153

[Close]

BLAST of Sed0009016 vs. ExPASy Swiss-Prot
Match: Q96H35 (Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 49/139 (35.25%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 16  KLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 75
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 76  KEKMHGKLARGRPLVVRLASEK------------LTINTTKDSSREAGESSKSRLGGSNY 135
            + ++GKLA  + LVVR A  +            L I+    SS E  +S+         
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPTQSN--------- 145

Query: 136 GQMTRSDKIAAIKNKLRAL 143
             ++ + KI AI+ KL+ +
Sbjct: 146 --LSVTAKIKAIEAKLKMM 153

[Close]

BLAST of Sed0009016 vs. ExPASy Swiss-Prot
Match: Q5R6W3 (Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-13
Identity = 49/139 (35.25%), Postives = 77/139 (55.40%), Query Frame = 0


Query: 16  KLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 75
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 76  KEKMHGKLARGRPLVVRLASEK------------LTINTTKDSSREAGESSKSRLGGSNY 135
            + ++GKLA  + LVVR A  +            L I+    SS E  +S+         
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPTQSN--------- 145

Query: 136 GQMTRSDKIAAIKNKLRAL 143
             ++ + KI AI+ KL+ +
Sbjct: 146 --LSVTAKIKAIEAKLKMM 153

[Close]

BLAST of Sed0009016 vs. ExPASy TrEMBL
Match: A0A6J1DUC5 (probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.9e-75
Identity = 155/175 (88.57%), Postives = 159/175 (90.86%), Query Frame = 0


Query: 1   MPMDSCGFVDEKCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           M MDS GFVDEKCESKLYIGNLDLRITEA LIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 50  MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 109

Query: 61  FAFIEYSSKEEAKLAKEKMHGKLARGRPLVVRLASEKLTINTTKDSSREAGESSKSRLGG 120
           FAFIEYSSKEEAKLAKEKMHGKLA GRPLVVRLASEK  I+TTK  SR AGESSKSRLGG
Sbjct: 110 FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 169

Query: 121 SNYGQMTRSDKIAAIKNKLRALEGGGEGSS--VKKQKQDHISCRDNVDKSSLKTS 174
           SNYGQMTR+DKIAAIKNKLRALEG  E SS  VKKQKQD+ISCRDN+DK  LKTS
Sbjct: 170 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDK-PLKTS 223

[Close]

BLAST of Sed0009016 vs. ExPASy TrEMBL
Match: A0A6J1DUD9 (probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.9e-75
Identity = 155/175 (88.57%), Postives = 159/175 (90.86%), Query Frame = 0


Query: 1   MPMDSCGFVDEKCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           M MDS GFVDEKCESKLYIGNLDLRITEA LIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60

Query: 61  FAFIEYSSKEEAKLAKEKMHGKLARGRPLVVRLASEKLTINTTKDSSREAGESSKSRLGG 120
           FAFIEYSSKEEAKLAKEKMHGKLA GRPLVVRLASEK  I+TTK  SR AGESSKSRLGG
Sbjct: 61  FAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGG 120

Query: 121 SNYGQMTRSDKIAAIKNKLRALEGGGEGSS--VKKQKQDHISCRDNVDKSSLKTS 174
           SNYGQMTR+DKIAAIKNKLRALEG  E SS  VKKQKQD+ISCRDN+DK  LKTS
Sbjct: 121 SNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDK-PLKTS 174

[Close]

BLAST of Sed0009016 vs. ExPASy TrEMBL
Match: A0A1S3ATX2 (probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 148/171 (86.55%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 3   MDSCGFVDEKCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 62
           MDS GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 1   MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 60

Query: 63  FIEYSSKEEAKLAKEKMHGKLARGRPLVVRLASEKLTINTTKDSSREAGESSKSRLGGSN 122
           FIEYSSKEEAKLAKEKMHGKLA GRPLVVRLASEKL +NT  D+S+ A ES KSRLGGS+
Sbjct: 61  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSS 120

Query: 123 YGQMTRSDKIAAIKNKLRALEGGGEGSSVKKQKQDHISCRDNVDKSSLKTS 174
           YGQ+TRSDKIAAIKNKLRALEGGGE SSVKK KQD+IS +D++DKS LKTS
Sbjct: 121 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 171

[Close]

BLAST of Sed0009016 vs. ExPASy TrEMBL
Match: A0A5A7TLJ6 (Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00930 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.1e-74
Identity = 147/170 (86.47%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 4   DSCGFVDEKCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63
           DS GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 34  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 93

Query: 64  IEYSSKEEAKLAKEKMHGKLARGRPLVVRLASEKLTINTTKDSSREAGESSKSRLGGSNY 123
           IEYSSKEEAKLAKEKMHGKLA GRPLVVRLASEKL +NT  D+S+ A ES KSRLGGS+Y
Sbjct: 94  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSY 153

Query: 124 GQMTRSDKIAAIKNKLRALEGGGEGSSVKKQKQDHISCRDNVDKSSLKTS 174
           GQ+TRSDKIAAIKNKLRALEGGGE SSVKK KQD+IS +D++DKS LKTS
Sbjct: 154 GQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 203

[Close]

BLAST of Sed0009016 vs. ExPASy TrEMBL
Match: A0A6J1DXL8 (probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.4e-74
Identity = 153/172 (88.95%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 4   DSCGFVDEKCESKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63
           DS GFVDEKCESKLYIGNLDLRITEA LIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 22  DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 81

Query: 64  IEYSSKEEAKLAKEKMHGKLARGRPLVVRLASEKLTINTTKDSSREAGESSKSRLGGSNY 123
           IEYSSKEEAKLAKEKMHGKLA GRPLVVRLASEK  I+TTK  SR AGESSKSRLGGSNY
Sbjct: 82  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSNY 141

Query: 124 GQMTRSDKIAAIKNKLRALEGGGEGSS--VKKQKQDHISCRDNVDKSSLKTS 174
           GQMTR+DKIAAIKNKLRALEG  E SS  VKKQKQD+ISCRDN+DK  LKTS
Sbjct: 142 GQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNISCRDNIDK-PLKTS 192

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BLAST of Sed0009016 vs. TAIR 10
Match: AT5G52545.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-11
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 79  MHGKLARGRPLVVRLASEKLTINTTKD-SSREAGESSKSR-LGGSNYGQMTRSDKIAAIK 138
           MHG+LA GRPLVVRLASEK   +++ D S R   E +++R + GS+ GQM+R +K+ AIK
Sbjct: 1   MHGRLACGRPLVVRLASEKHLEDSSHDHSKRSLPEGNRTRFVNGSSSGQMSRDEKVTAIK 60

Query: 139 NKLRALEGGGEGSSVKKQK 156
           NKL+ALE   E    KKQK
Sbjct: 61  NKLKALE-EDEKRDPKKQK 78

[Close]

BLAST of Sed0009016 vs. TAIR 10
Match: AT1G71770.1 (poly(A)-binding protein 5 )

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 15  SKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKL 74
           S LY+ NLD  + +  L +MFS +G + S   + +++G      RGF F+ YS+ EEA L
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS----RGFGFVAYSNPEEALL 401

Query: 75  AKEKMHGKLARGRPLVVRLASEK 98
           A ++M+GK+   +PL V LA  K
Sbjct: 402 AMKEMNGKMIGRKPLYVALAQRK 420

[Close]

BLAST of Sed0009016 vs. TAIR 10
Match: AT1G71770.2 (poly(A)-binding protein 5 )

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 15  SKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKL 74
           S LY+ NLD  + +  L +MFS +G + S   + +++G      RGF F+ YS+ EEA L
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS----RGFGFVAYSNPEEALL 401

Query: 75  AKEKMHGKLARGRPLVVRLASEK 98
           A ++M+GK+   +PL V LA  K
Sbjct: 402 AMKEMNGKMIGRKPLYVALAQRK 420

[Close]

BLAST of Sed0009016 vs. TAIR 10
Match: AT3G16380.1 (poly(A) binding protein 6 )

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-09
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 15  SKLYIGNLDLRITEAVLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKL 74
           S LY+ NL   + E  L ++F  +G+I+S   + H    + G  +GF F+ +S+ EE+K 
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH----ENGRSKGFGFVCFSNCEESKQ 363

Query: 75  AKEKMHGKLARGRPLVVRLASEK 98
           AK  ++G L  G+P+VVR+A  K
Sbjct: 364 AKRYLNGFLVDGKPIVVRVAERK 382

[Close]

BLAST of Sed0009016 vs. TAIR 10
Match: AT5G03580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-08
Identity = 35/82 (42.68%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 15 SKLYIGNLDLRITEAVLIKMFSPFGKII----SEDFLWHTRGPKRGEPRGFAFIEYSSKE 74
          + LYI NLD +++E +L  MFS FGK+I    ++DF        RGE RGFAFIE+ S +
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDF--------RGESRGFAFIEFESAD 76

Query: 75 EAKLAKEKMHGKLARGRPLVVR 93
           A  A   M G+L   + L V+
Sbjct: 77 SAGRAMLHMDGRLIGQKILCVQ 90

The following BLAST results are available for this feature:

BLAST of Sed0009016 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157813.1	1.0e-74	88.57	probable RNA-binding protein 18 isoform X3 [Momordica charantia]	[more]
XP_022157798.1	1.0e-74	88.57	probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1...	[more]
XP_008437528.1	2.2e-74	86.55	PREDICTED: probable RNA-binding protein 18 [Cucumis melo]	[more]
XP_011654647.1	3.8e-74	87.72	probable RNA-binding protein 18 isoform X2 [Cucumis sativus] >KAE8647815.1 hypot...	[more]
KAA0042597.1	8.5e-74	86.47	putative RNA-binding protein 18 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0009016 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBM8	7.1e-15	38.64	Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1	[more]
Q66J99	3.5e-14	33.76	Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1	[more]
Q9CR83	1.0e-13	35.25	Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1	[more]
Q96H35	1.8e-13	35.25	Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1	[more]
Q5R6W3	1.8e-13	35.25	Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1	[more]

BLAST of Sed0009016 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUC5	4.9e-75	88.57	probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DUD9	4.9e-75	88.57	probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A1S3ATX2	1.1e-74	86.55	probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=...	[more]
A0A5A7TLJ6	4.1e-74	86.47	Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A6J1DXL8	5.4e-74	88.95	probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of Sed0009016 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52545.1	8.4e-11	54.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G71770.1	1.6e-09	39.76	poly(A)-binding protein 5	[more]
AT1G71770.2	1.6e-09	39.76	poly(A)-binding protein 5	[more]
AT3G16380.1	4.6e-09	37.35	poly(A) binding protein 6	[more]
AT5G03580.1	1.0e-08	42.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 1..56 e-value: 7.1E-9 score: 35.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..63 score: 12.867332
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..125 e-value: 1.3E-14 score: 56.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..95
None	No IPR available	PANTHER	PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	coord: 1..134
None	No IPR available	PANTHER	PTHR21245:SF2	RNA-BINDING PROTEIN 18-RELATED	coord: 1..134
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009016.1	Sed0009016.1	mRNA
Sed0009016.2	Sed0009016.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding