Sed0009006 (gene) Chayote v1

Overview


Name	Sed0009006
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ABC transporter F family member 4-like
Location	LG11: 3901342 .. 3902269 (-)
RNA-Seq Expression	Sed0009006
Synteny	Sed0009006

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAGATATGCTTGCTACTCATGCTGCAGAACAAGCGGGAAAAGAAGCTTTAAGGGATGATTGTGATGCTTTCACCGTTATAATCGGTACCCTAGATCGTAACCGCGAAACTGATGCGAATGTCATAGACTTAACAGTTGAGAAAGGGCTTTTAAAGAGAGCAGCATCAATTAATTTTTTTCATGGAAAGAGGTGTAGTTTAGTTGAACCCAAATAGAATAGGAAAATTCACATTGTTAAAACTCTTAGCTTGGAGGAAGAAACCAATTCCTTAAAAACATTGATGCCCTCTTGGTTGAACAAGAAGTGGTTGGAGTTCATAGAACTTCCCTTCAAGCTGTCATTTCGACTTGTGAGGACCTCGTCGAGCTTCGACACAAAGTCGTTGAGTTGCATAATTCATATGATGATTATGCAGGAGAGAAGCTTGTTGATTTGGAAAGTAGGGCAAAATCATTTAGTGGTGGAAGAATACTTTTATGATTGGAAGAATCCACAATATTATATAGTATGGAGTATTATCTAAAAAGTAACTCGTAAATAGAGGTTAGCTCACCTATCTTATAAATATTAGAAGGCCTCCTCATTTTTCTAATGTGAGATCCTTTGACACACATATCATTTGAACTTTAAAGTCATCTTCTAGTTGGAGGAATACTTATGTCGATGGAAGAAAACACTCGTCGTCGTATCACATGATCGTAATTTCCTCAACGTTGTTTGCAGTGAAATCATTAATCTTCACAACTTTAAGGTTTCCTTCCTACTGTGGGAACTTGATGATTTCGAAAGTGCGTATGAGCAGCATCGTAAAGATGACCAAGAAGTTCAAAATCTACGAACAAGAGAATGCAGACCAGAGATCATGGAAAAAGTTTGATGCTGCTAAAGAAGCATCAAAGAAGTTGTTGAAAGTTGATTAA

mRNA sequence

ATGAAGAAAGATATGCTTGCTACTCATGCTGCAGAACAAGCGGGAAAAGAAGCTTTAAGGGATGATTGTGATGCTTTCACCGTTATAATCGGTACCCTAGATCGTAACCGCGAAACTGATGCGAATGTCATAGACTTAACACTTGGAGGAAGAAACCAATTCCTTAAAAACATTGATGCCCTCTTGGTTGAACAAGAAGTGGTTGGAGTTCATAGAACTTCCCTTCAAGCTGTCATTTCGACTTGTGAGGACCTCGTCGAGCTTCGACACAAAGTCGTTGAGTTGCATAATTCATATGATGATTATGCAGGAGAGAAGCTTGTTGATTTGGAAATGAAATCATTAATCTTCACAACTTTAAGGTTTCCTTCCTACTGTGGGAACTTGATGATTTCGAAAGTGCGTATGAGCAGCATCGTAAAGATGACCAAGAAGTTCAAAATCTACGAACAAGAGAATGCAGACCAGAGATCATGGAAAAAGTTTGATGCTGCTAAAGAAGCATCAAAGAAGTTGTTGAAAGTTGATTAA

Coding sequence (CDS)

ATGAAGAAAGATATGCTTGCTACTCATGCTGCAGAACAAGCGGGAAAAGAAGCTTTAAGGGATGATTGTGATGCTTTCACCGTTATAATCGGTACCCTAGATCGTAACCGCGAAACTGATGCGAATGTCATAGACTTAACACTTGGAGGAAGAAACCAATTCCTTAAAAACATTGATGCCCTCTTGGTTGAACAAGAAGTGGTTGGAGTTCATAGAACTTCCCTTCAAGCTGTCATTTCGACTTGTGAGGACCTCGTCGAGCTTCGACACAAAGTCGTTGAGTTGCATAATTCATATGATGATTATGCAGGAGAGAAGCTTGTTGATTTGGAAATGAAATCATTAATCTTCACAACTTTAAGGTTTCCTTCCTACTGTGGGAACTTGATGATTTCGAAAGTGCGTATGAGCAGCATCGTAAAGATGACCAAGAAGTTCAAAATCTACGAACAAGAGAATGCAGACCAGAGATCATGGAAAAAGTTTGATGCTGCTAAAGAAGCATCAAAGAAGTTGTTGAAAGTTGATTAA

Protein sequence

MKKDMLATHAAEQAGKEALRDDCDAFTVIIGTLDRNRETDANVIDLTLGGRNQFLKNIDALLVEQEVVGVHRTSLQAVISTCEDLVELRHKVVELHNSYDDYAGEKLVDLEMKSLIFTTLRFPSYCGNLMISKVRMSSIVKMTKKFKIYEQENADQRSWKKFDAAKEASKKLLKVD

Homology

[Close]

BLAST of Sed0009006 vs. NCBI nr
Match: XP_022158213.1 (ABC transporter F family member 4-like [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-16
Identity = 70/165 (42.42%), Postives = 87/165 (52.73%), Query Frame = 0


Query: 2   KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG-------- 61
           +KDM A HAAEQA +EAL+DD DAFTV+IG+    +D N E DANV D+T+         
Sbjct: 124 RKDMFAAHAAEQARQEALKDDHDAFTVVIGSRALVIDGNDEADANVKDITIENFSVSARG 183

Query: 62  -------------------------GRNQFL-----------KNIDALLVEQEVVGVHRT 111
                                    G++  L           KNID LLVEQEVVG  RT
Sbjct: 184 KELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRT 243

[Close]

BLAST of Sed0009006 vs. NCBI nr
Match: XP_022157860.1 (ABC transporter F family member 4-like [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.7e-16
Identity = 70/165 (42.42%), Postives = 87/165 (52.73%), Query Frame = 0


Query: 2   KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG-------- 61
           +KDM A HAAEQA +EAL+DD DAFTV+IG+    +D N E DANV D+T+         
Sbjct: 124 RKDMXAAHAAEQARQEALKDDHDAFTVVIGSRAXVIDGNDEADANVKDITIENFSVSARG 183

Query: 62  -------------------------GRNQFL-----------KNIDALLVEQEVVGVHRT 111
                                    G++  L           KNID LLVEQEVVG  RT
Sbjct: 184 KELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRT 243

[Close]

BLAST of Sed0009006 vs. NCBI nr
Match: XP_038881811.1 (ABC transporter F family member 4 [Benincasa hispida] >XP_038881812.1 ABC transporter F family member 4 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-16
Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 2   KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG-------- 61
           +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+         
Sbjct: 123 RKDMFAAHAAEQARQEALKDDHDAFTVVIGSRASVLDGNDEADANVKDITIDNFSVSARG 182

Query: 62  -------------------------GRNQFL-----------KNIDALLVEQEVVGVHRT 114
                                    G++  L           KNID LLVEQEVVG  RT
Sbjct: 183 KELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRT 242

[Close]

BLAST of Sed0009006 vs. NCBI nr
Match: XP_008462810.1 (PREDICTED: ABC transporter F family member 4-like [Cucumis melo] >XP_008462811.1 PREDICTED: ABC transporter F family member 4-like [Cucumis melo] >KAA0066330.1 ABC transporter F family member 4-like [Cucumis melo var. makuwa] >TYK00949.1 ABC transporter F family member 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-16
Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 2   KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG-------- 61
           +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+         
Sbjct: 124 RKDMFAAHAAEQARQEALKDDHDAFTVVIGSRASVLDGNDEADANVKDITIDNFSVSARG 183

Query: 62  -------------------------GRNQFL-----------KNIDALLVEQEVVGVHRT 114
                                    G++  L           KNID LLVEQEVVG  R+
Sbjct: 184 KELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 243

[Close]

BLAST of Sed0009006 vs. NCBI nr
Match: XP_011653838.2 (ABC transporter F family member 4 [Cucumis sativus] >XP_031740087.1 ABC transporter F family member 4 [Cucumis sativus] >XP_031740088.1 ABC transporter F family member 4 [Cucumis sativus] >XP_031740089.1 ABC transporter F family member 4 [Cucumis sativus] >KAE8649655.1 hypothetical protein Csa_012647 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-16
Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 2   KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG-------- 61
           +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+         
Sbjct: 124 RKDMFAAHAAEQARQEALKDDHDAFTVVIGSRASVLDGNDEADANVKDITIDNFSVSARG 183

Query: 62  -------------------------GRNQFL-----------KNIDALLVEQEVVGVHRT 114
                                    G++  L           KNID LLVEQEVVG  R+
Sbjct: 184 KELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 243

[Close]

BLAST of Sed0009006 vs. ExPASy Swiss-Prot
Match: Q9M1H3 (ABC transporter F family member 4 OS=Arabidopsis thaliana OX=3702 GN=ABCF4 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-11
Identity = 58/168 (34.52%), Postives = 78/168 (46.43%), Query Frame = 0


Query: 3   KDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG--------- 62
           K+ LA  AAE A +EA++DD DAFTV+IG+    L+ +   DANV D+T+          
Sbjct: 116 KERLALQAAESAKREAMKDDHDAFTVVIGSKTSVLEGDDMADANVKDITIESFSVSARGK 175

Query: 63  ------------------------GRNQFL-----------KNIDALLVEQEVVGVHRTS 111
                                   G++  L           KNID LLVEQEVVG  +++
Sbjct: 176 ELLKNASVRISHGKRYGLIGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDEKSA 235

[Close]

BLAST of Sed0009006 vs. ExPASy TrEMBL
Match: A0A6J1DVG6 (ABC transporter F family member 4-like OS=Momordica charantia OX=3673 GN=LOC111024749 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.2e-17
Identity = 70/165 (42.42%), Postives = 87/165 (52.73%), Query Frame = 0


Query: 2   KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG-------- 61
           +KDM A HAAEQA +EAL+DD DAFTV+IG+    +D N E DANV D+T+         
Sbjct: 124 RKDMFAAHAAEQARQEALKDDHDAFTVVIGSRALVIDGNDEADANVKDITIENFSVSARG 183

Query: 62  -------------------------GRNQFL-----------KNIDALLVEQEVVGVHRT 111
                                    G++  L           KNID LLVEQEVVG  RT
Sbjct: 184 KELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRT 243

[Close]

BLAST of Sed0009006 vs. ExPASy TrEMBL
Match: A0A6J1DU74 (ABC transporter F family member 4-like OS=Momordica charantia OX=3673 GN=LOC111024476 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.0e-17
Identity = 70/165 (42.42%), Postives = 87/165 (52.73%), Query Frame = 0


Query: 2   KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG-------- 61
           +KDM A HAAEQA +EAL+DD DAFTV+IG+    +D N E DANV D+T+         
Sbjct: 124 RKDMXAAHAAEQARQEALKDDHDAFTVVIGSRAXVIDGNDEADANVKDITIENFSVSARG 183

Query: 62  -------------------------GRNQFL-----------KNIDALLVEQEVVGVHRT 111
                                    G++  L           KNID LLVEQEVVG  RT
Sbjct: 184 KELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRT 243

[Close]

BLAST of Sed0009006 vs. ExPASy TrEMBL
Match: A0A1S3CJD6 (ABC transporter F family member 4-like OS=Cucumis melo OX=3656 GN=LOC103501091 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 2   KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG-------- 61
           +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+         
Sbjct: 124 RKDMFAAHAAEQARQEALKDDHDAFTVVIGSRASVLDGNDEADANVKDITIDNFSVSARG 183

Query: 62  -------------------------GRNQFL-----------KNIDALLVEQEVVGVHRT 114
                                    G++  L           KNID LLVEQEVVG  R+
Sbjct: 184 KELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 243

[Close]

BLAST of Sed0009006 vs. ExPASy TrEMBL
Match: A0A5A7VGP5 (ABC transporter F family member 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001250 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 2   KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG-------- 61
           +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+         
Sbjct: 124 RKDMFAAHAAEQARQEALKDDHDAFTVVIGSRASVLDGNDEADANVKDITIDNFSVSARG 183

Query: 62  -------------------------GRNQFL-----------KNIDALLVEQEVVGVHRT 114
                                    G++  L           KNID LLVEQEVVG  R+
Sbjct: 184 KELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 243

[Close]

BLAST of Sed0009006 vs. ExPASy TrEMBL
Match: A0A0A0LNE5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G431120 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 70/167 (41.92%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 2   KKDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG-------- 61
           +KDM A HAAEQA +EAL+DD DAFTV+IG+    LD N E DANV D+T+         
Sbjct: 124 RKDMFAAHAAEQARQEALKDDHDAFTVVIGSRASVLDGNDEADANVKDITIDNFSVSARG 183

Query: 62  -------------------------GRNQFL-----------KNIDALLVEQEVVGVHRT 114
                                    G++  L           KNID LLVEQEVVG  R+
Sbjct: 184 KELLKNASVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 243

[Close]

BLAST of Sed0009006 vs. TAIR 10
Match: AT3G54540.1 (general control non-repressible 4 )

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-12
Identity = 58/168 (34.52%), Postives = 78/168 (46.43%), Query Frame = 0


Query: 3   KDMLATHAAEQAGKEALRDDCDAFTVIIGT----LDRNRETDANVIDLTLG--------- 62
           K+ LA  AAE A +EA++DD DAFTV+IG+    L+ +   DANV D+T+          
Sbjct: 116 KERLALQAAESAKREAMKDDHDAFTVVIGSKTSVLEGDDMADANVKDITIESFSVSARGK 175

Query: 63  ------------------------GRNQFL-----------KNIDALLVEQEVVGVHRTS 111
                                   G++  L           KNID LLVEQEVVG  +++
Sbjct: 176 ELLKNASVRISHGKRYGLIGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDEKSA 235

The following BLAST results are available for this feature:

BLAST of Sed0009006 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158213.1	1.3e-16	42.42	ABC transporter F family member 4-like [Momordica charantia]	[more]
XP_022157860.1	1.7e-16	42.42	ABC transporter F family member 4-like [Momordica charantia]	[more]
XP_038881811.1	2.2e-16	41.92	ABC transporter F family member 4 [Benincasa hispida] >XP_038881812.1 ABC transp...	[more]
XP_008462810.1	2.8e-16	41.92	PREDICTED: ABC transporter F family member 4-like [Cucumis melo] >XP_008462811.1...	[more]
XP_011653838.2	2.8e-16	41.92	ABC transporter F family member 4 [Cucumis sativus] >XP_031740087.1 ABC transpor...	[more]

BLAST of Sed0009006 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1H3	2.9e-11	34.52	ABC transporter F family member 4 OS=Arabidopsis thaliana OX=3702 GN=ABCF4 PE=2 ...	[more]

BLAST of Sed0009006 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVG6	6.2e-17	42.42	ABC transporter F family member 4-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1DU74	8.0e-17	42.42	ABC transporter F family member 4-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A1S3CJD6	1.4e-16	41.92	ABC transporter F family member 4-like OS=Cucumis melo OX=3656 GN=LOC103501091 P...	[more]
A0A5A7VGP5	1.4e-16	41.92	ABC transporter F family member 4-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LNE5	1.4e-16	41.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G431120 PE=4 SV=1	[more]

BLAST of Sed0009006 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54540.1	2.0e-12	34.52	general control non-repressible 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19211:SF120	SUBFAMILY NOT NAMED	coord: 2..48
None	No IPR available	PANTHER	PTHR19211	ATP-BINDING TRANSPORT PROTEIN-RELATED	coord: 2..48
None	No IPR available	PANTHER	PTHR19211	ATP-BINDING TRANSPORT PROTEIN-RELATED	coord: 56..101
None	No IPR available	PANTHER	PTHR19211:SF120	SUBFAMILY NOT NAMED	coord: 56..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0009006.1	Sed0009006.1	mRNA