Sed0008984 (gene) Chayote v1

Overview
NameSed0008984
Typegene
OrganismSechium edule (Chayote v1)
Descriptionserine/arginine repetitive matrix protein 1-like
LocationLG08: 36996616 .. 36999278 (-)
RNA-Seq ExpressionSed0008984
SyntenySed0008984
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGACTTGACCCGAAAAACCCCTCCATTCCACATCTAAGAGAATGACAGGATCGCATCGTGGCCGTCAAATTTGTTCACTTGGTAGTTTACCAGAAAACAGAGCACAGAAAAGGCAGGTCTGTTTAGACGAGATCGGAGCAGAGCAAACAATGGTGAGAGGAATTATCAGTCCCCCAAGATCCCGTTCTTCTCCAAGAGAAAACAGACCTTTCAATAATAACAACAATGCCACCGCCAATCCACCCTCCAGACCCAACTACATGTCTCCTTGTCGCCGCCCGGCAACGGCAACGCCCGCCTCCGATCCACGAAATCCCAGAAAAGAAACCCAACCCGCCACCGGTCCACGCCCCAGCAGAACCAACCCCGACAGATCTTCAACCGCTCCCCGAACCGACCCATCCAAACCCATTTCTTCCAAGCCCCTGCCCTCGAGGCGAACACCACCAGCCCCAAATCCTCACGACAAGAAATTAGACGCCAACAGCAACAAAACGCCGGTCGCTAAAACCCGACCGGCTTCCTCTCGCCCGGTCAAACCGGGAAATACTACACCGGCGCGTGGGCCCACGCCTTCGAAGGGAAATGTGAAGGGAGCCATCGGGTCTGGTTCCAGATCCGATGCTTCCGGTTTGGGTCATAAGTACTTAGATTCTCGAAATGGTTCCAGCGGCGGGTCGGGTCATCGGGTGGACGGGGATGTTGGAAACCCGAACCGTTGTTATTCGGATGGACATTATTATGGTGCGTTTCGTGATCCTGCTGTTCGTGCTAAGTTGCATCAGCTTTCTTTAGATGGTGAGCTTTTATTATACTTCTACCTCTTTACTTCTTTTATTTAAATGGCTTGACGATTTAGCTTTAAAATGTTGCAAATGGTTGGTTCTGGTTAAATTTTGTTTATAACTTCCATAGGTTGATCGCATAATACTTGGATCAAAGAATACATTTTTAATACCATCTATTTATTAACTGTCCCCAAAGCACACCCTAACAGATGAGCCTAAGAATTTCAAGGCATTCTTTTTTGAAAGAATAACGAATAACGAAGTATAGAGTTCGAGTATAGGAGAGCGAAGTTCCAATTAAACTAGAATAACGAAGTATCCTAGCGGCCACAGTCTAGTGCCCGAGTATCGGAGAGCGAAGTTCCGATTTTTCAATTTTCAACAAAAAAAAAACATGCATTTAACTTTTCTTTTGATAACTTTATGATGCCAAAGTGCAGCCCGTAACTATTTCAAGTAAACTTACTTGCATCTTGGCTAATTTTAAGGGATTCTACACTATTTCATTGAAATCTTTAAATCTTATTAATCATTTGACCTAACTTATGATAATTTGCTTACTTTTTTTTGGTACGATAATTTTCTTACTTTGCCATTAGTGGATTGATGTTTTAAAAATTATCATAATAATTGAGAAAGAAAGATTTTGGATTGATAACTTCTTCTTAATGAGAGTATTAAATTATGATGTTGTTGACATTAATGATTTGCTTCTAAATTAGCCTAGGACATACCAAATAGTTATTAGCATTCATATTGAGGATGGAATTACAATTTAGAGGTTGGAACTTAGAAGCTAAAGTCCAATTTTTTTGTGGAGAAATAGAATTTGACATTTCTTATATCTCTCTTTTTTGGGGTAAAAATGAGGAAGAAAACTATAATTCTTAATTTTTATGTTTTTTTTTTGGCAAACCTAAGATGAACTAGATTTGTATTAACTCTTGTTCTTGAAAATCTTGTGTAGACAAAGATCTTGCAAACCTCGTCCTTCACGCAAATTCGATATATGAATCATTCAATTCAGATACAAAGGAAGAACAATGTAGTTCTCAAAGCAACAACATTGGTACAAGAATACTTCAAATCTTCAAAGAAATTTCATCTCACCGTCAAGGAAACTCCTCCATCACATCCTACATTACAAAGCTAAATAAATTATGGGACGAACTCGCAACCTACATCGACGTGCCTCAATGTTCTTGTGGTTCTATCGAGAAGTCAAGCGAGCAAATACAAAGGGAAAAAGTAATGCAATTTGTCGTCGGATTAGACGATTCTTATTCCACATTTTGCGCGAAAATCCTCGACATGAAGCCATTTCCAACCGTGGAGAAAGCTTGTTCTGTGATAATTCGAGAAGAAAAACGCAGAGAAGTGGTTCAGTCATTGGAAAATTTTGCTGAGAAAGTAATTCAAAACAATTGGCTTGTTAATGGGAACTTCAACAATGTTGATAATAATGATGGTATTAAGGAGCAACAAATTGATCATAATGAAGTTGCATGCATCCCTGTTGAGCCATTGCTGATTGATCTTGGCTCTCCTGTTCGTTGTTGAATATTTTCAGCTAAATCTAAGGTTATACTTTTTTTTACATGTTTCATGATTGTTCAATATTTTGTTGAATTACATTTTTCTAATATTTTGTGTGTATTTTTTTTTCAGGAATAATTCGAGGATAAAAGTATACTACTTTTCTAAACTATTAATTATTATGAAGAGGCTTCTAGTGGAAAAACTAAACCTTGTTGGGTAGGAGTTTGTGTGCTTTTTCTTTTTATGTAGTTTATTTGTAGTGGATGAAAATATTAGTGGGATTTAGCAATATAATTGTTTACTAATAAATCAAGTAGGAACTTTTTCTTTTTAA

mRNA sequence

GTTGACTTGACCCGAAAAACCCCTCCATTCCACATCTAAGAGAATGACAGGATCGCATCGTGGCCGTCAAATTTGTTCACTTGGTAGTTTACCAGAAAACAGAGCACAGAAAAGGCAGGTCTGTTTAGACGAGATCGGAGCAGAGCAAACAATGGTGAGAGGAATTATCAGTCCCCCAAGATCCCGTTCTTCTCCAAGAGAAAACAGACCTTTCAATAATAACAACAATGCCACCGCCAATCCACCCTCCAGACCCAACTACATGTCTCCTTGTCGCCGCCCGGCAACGGCAACGCCCGCCTCCGATCCACGAAATCCCAGAAAAGAAACCCAACCCGCCACCGGTCCACGCCCCAGCAGAACCAACCCCGACAGATCTTCAACCGCTCCCCGAACCGACCCATCCAAACCCATTTCTTCCAAGCCCCTGCCCTCGAGGCGAACACCACCAGCCCCAAATCCTCACGACAAGAAATTAGACGCCAACAGCAACAAAACGCCGGTCGCTAAAACCCGACCGGCTTCCTCTCGCCCGGTCAAACCGGGAAATACTACACCGGCGCGTGGGCCCACGCCTTCGAAGGGAAATGTGAAGGGAGCCATCGGGTCTGGTTCCAGATCCGATGCTTCCGGTTTGGGTCATAAGTACTTAGATTCTCGAAATGGTTCCAGCGGCGGGTCGGGTCATCGGGTGGACGGGGATGTTGGAAACCCGAACCGTTGTTATTCGGATGGACATTATTATGGTGCGTTTCGTGATCCTGCTGTTCGTGCTAAGTTGCATCAGCTTTCTTTAGATGACAAAGATCTTGCAAACCTCGTCCTTCACGCAAATTCGATATATGAATCATTCAATTCAGATACAAAGGAAGAACAATGTAGTTCTCAAAGCAACAACATTGGTACAAGAATACTTCAAATCTTCAAAGAAATTTCATCTCACCGTCAAGGAAACTCCTCCATCACATCCTACATTACAAAGCTAAATAAATTATGGGACGAACTCGCAACCTACATCGACGTGCCTCAATGTTCTTGTGGTTCTATCGAGAAGTCAAGCGAGCAAATACAAAGGGAAAAAGTAATGCAATTTGTCGTCGGATTAGACGATTCTTATTCCACATTTTGCGCGAAAATCCTCGACATGAAGCCATTTCCAACCGTGGAGAAAGCTTGTTCTGTGATAATTCGAGAAGAAAAACGCAGAGAAGTGGTTCAGTCATTGGAAAATTTTGCTGAGAAAGTAATTCAAAACAATTGGCTTGTTAATGGGAACTTCAACAATGTTGATAATAATGATGGTATTAAGGAGCAACAAATTGATCATAATGAAGTTGCATGCATCCCTGTTGAGCCATTGCTGATTGATCTTGGCTCTCCTGTTCGTTGTTGAATATTTTCAGCTAAATCTAAGGAATAATTCGAGGATAAAAGTATACTACTTTTCTAAACTATTAATTATTATGAAGAGGCTTCTAGTGGAAAAACTAAACCTTGTTGGGTAGGAGTTTGTGTGCTTTTTCTTTTTATGTAGTTTATTTGTAGTGGATGAAAATATTAGTGGGATTTAGCAATATAATTGTTTACTAATAAATCAAGTAGGAACTTTTTCTTTTTAA

Coding sequence (CDS)

ATGACAGGATCGCATCGTGGCCGTCAAATTTGTTCACTTGGTAGTTTACCAGAAAACAGAGCACAGAAAAGGCAGGTCTGTTTAGACGAGATCGGAGCAGAGCAAACAATGGTGAGAGGAATTATCAGTCCCCCAAGATCCCGTTCTTCTCCAAGAGAAAACAGACCTTTCAATAATAACAACAATGCCACCGCCAATCCACCCTCCAGACCCAACTACATGTCTCCTTGTCGCCGCCCGGCAACGGCAACGCCCGCCTCCGATCCACGAAATCCCAGAAAAGAAACCCAACCCGCCACCGGTCCACGCCCCAGCAGAACCAACCCCGACAGATCTTCAACCGCTCCCCGAACCGACCCATCCAAACCCATTTCTTCCAAGCCCCTGCCCTCGAGGCGAACACCACCAGCCCCAAATCCTCACGACAAGAAATTAGACGCCAACAGCAACAAAACGCCGGTCGCTAAAACCCGACCGGCTTCCTCTCGCCCGGTCAAACCGGGAAATACTACACCGGCGCGTGGGCCCACGCCTTCGAAGGGAAATGTGAAGGGAGCCATCGGGTCTGGTTCCAGATCCGATGCTTCCGGTTTGGGTCATAAGTACTTAGATTCTCGAAATGGTTCCAGCGGCGGGTCGGGTCATCGGGTGGACGGGGATGTTGGAAACCCGAACCGTTGTTATTCGGATGGACATTATTATGGTGCGTTTCGTGATCCTGCTGTTCGTGCTAAGTTGCATCAGCTTTCTTTAGATGACAAAGATCTTGCAAACCTCGTCCTTCACGCAAATTCGATATATGAATCATTCAATTCAGATACAAAGGAAGAACAATGTAGTTCTCAAAGCAACAACATTGGTACAAGAATACTTCAAATCTTCAAAGAAATTTCATCTCACCGTCAAGGAAACTCCTCCATCACATCCTACATTACAAAGCTAAATAAATTATGGGACGAACTCGCAACCTACATCGACGTGCCTCAATGTTCTTGTGGTTCTATCGAGAAGTCAAGCGAGCAAATACAAAGGGAAAAAGTAATGCAATTTGTCGTCGGATTAGACGATTCTTATTCCACATTTTGCGCGAAAATCCTCGACATGAAGCCATTTCCAACCGTGGAGAAAGCTTGTTCTGTGATAATTCGAGAAGAAAAACGCAGAGAAGTGGTTCAGTCATTGGAAAATTTTGCTGAGAAAGTAATTCAAAACAATTGGCTTGTTAATGGGAACTTCAACAATGTTGATAATAATGATGGTATTAAGGAGCAACAAATTGATCATAATGAAGTTGCATGCATCCCTGTTGAGCCATTGCTGATTGATCTTGGCTCTCCTGTTCGTTGTTGA

Protein sequence

MTGSHRGRQICSLGSLPENRAQKRQVCLDEIGAEQTMVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKETQPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAKTRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGGSGHRVDGDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSDTKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCGSIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQSLENFAEKVIQNNWLVNGNFNNVDNNDGIKEQQIDHNEVACIPVEPLLIDLGSPVRC
Homology
BLAST of Sed0008984 vs. NCBI nr
Match: XP_023542694.1 (uncharacterized protein LOC111802521 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408.3 bits (1048), Expect = 8.6e-110
Identity = 255/421 (60.57%), Postives = 297/421 (70.55%), Query Frame = 0

Query: 37  MVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKET 96
           MVRGIISPPRSRSSPRE+RPF  NNN   NPPSRPNYMSP RRP T   A++ R  RKE 
Sbjct: 1   MVRGIISPPRSRSSPRESRPF--NNNGATNPPSRPNYMSPRRRPTTPINANELRTHRKEP 60

Query: 97  QPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAK 156
           QP    RP++   DRSS  PR DPS+P +SK +PSR  P AP+P+++KLD  +   P   
Sbjct: 61  QPTVVKRPTKPT-DRSSNPPRIDPSRP-NSKLVPSR--PAAPSPNERKLDTKT--APKTT 120

Query: 157 TRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGG--SG 216
           TR +S RP KP        P PSK N KGA GSGSRSD S    K  DS+ G+     SG
Sbjct: 121 TRFSSPRPTKPIT------PPPSKSNGKGASGSGSRSDFSRA--KPSDSQKGTPKNLRSG 180

Query: 217 HRVDGDVGNPNRCYSDGHYYG-AFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSD 276
              D       R YSDG Y      DP V  KLHQLSLDDKDLAN+VLHAN +YES  S+
Sbjct: 181 RLNDQQDEQIVRSYSDGSYGARTLSDPDVH-KLHQLSLDDKDLANIVLHANLVYESLASE 240

Query: 277 TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCG 336
           TKEE+CSSQ NN  +R+ QI+KEI+SH QGNSSITSYITKL  LWDEL  YID+P+CSCG
Sbjct: 241 TKEEECSSQGNN-SSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDIPKCSCG 300

Query: 337 SIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQS 396
           S +K SE+I+REKVMQF++GLDDSYST CA+IL MKPFPTVEKAC  I+REEKRRE+V S
Sbjct: 301 STQKQSEEIEREKVMQFLIGLDDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLS 360

Query: 397 LENFAEKVIQNNWLV-NGNFNNVDNND----GIKEQQIDHNEVACIPVEPLLIDLGSPVR 450
           LE  A KVIQNNWL+ NG+  N DN +     ++E + D NE   +P+EPLLIDLGSPVR
Sbjct: 361 LEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQELKADQNEAMSVPIEPLLIDLGSPVR 403

BLAST of Sed0008984 vs. NCBI nr
Match: XP_022954810.1 (serine/arginine repetitive matrix protein 1-like [Cucurbita moschata])

HSP 1 Score: 402.9 bits (1034), Expect = 3.6e-108
Identity = 256/421 (60.81%), Postives = 295/421 (70.07%), Query Frame = 0

Query: 37  MVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKET 96
           MVRGIISPPRSRSSPRE+RPF  NNN   NPPSRPNYMSP RRP T    ++ R  RKE 
Sbjct: 1   MVRGIISPPRSRSSPRESRPF--NNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEP 60

Query: 97  QPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAK 156
           QP    RP++   DRSS  PR DPS+P +SK  PSR  P AP+P+++KLD  +   P   
Sbjct: 61  QPTVVKRPTKPT-DRSSNPPRIDPSRP-NSKLAPSR--PAAPSPNERKLDTKT--APKTT 120

Query: 157 TRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGG--SG 216
           TR +S RP KP   TP     PSK N KGA GSGSRSD S    K  DS+ G+     SG
Sbjct: 121 TRFSSPRPTKP--ITP-----PSKSNGKGASGSGSRSDFSRA--KPSDSQKGTPKNLRSG 180

Query: 217 HRVDGDVGNPNRCYSDGHYYG-AFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSD 276
              D       R YSDG Y      DP V  KLHQLSLDDKDLAN+VLHAN +YES  S+
Sbjct: 181 RLNDQQDEQIVRSYSDGSYGARTLSDPDVH-KLHQLSLDDKDLANIVLHANLVYESLASE 240

Query: 277 TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCG 336
           TKEE+CSSQ NN  +R+ QI+KEI+SH QGNSSITSYITKL  LWDEL  YID P+CSCG
Sbjct: 241 TKEEECSSQGNN-SSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCG 300

Query: 337 SIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQS 396
           S EK SEQI+REKVMQF++GL+DSYST CA+IL MKPFPTVEKAC  I+REEKRRE+V S
Sbjct: 301 STEKQSEQIEREKVMQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLS 360

Query: 397 LENFAEKVIQNNWLV-NGNFNNVDNND----GIKEQQIDHNEVACIPVEPLLIDLGSPVR 450
           LE  A KVIQNNWL+ NG+  N DN +     +++ + D NE   IP+EPLLIDLGSPVR
Sbjct: 361 LEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVR 402

BLAST of Sed0008984 vs. NCBI nr
Match: KAG6573173.1 (hypothetical protein SDJN03_27060, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 402.1 bits (1032), Expect = 6.2e-108
Identity = 254/421 (60.33%), Postives = 293/421 (69.60%), Query Frame = 0

Query: 37  MVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKET 96
           MVRGIISPPRSRSSPRE+RPF  NNN   NPPSRPNYMSP RRP T    ++ R  RKE 
Sbjct: 1   MVRGIISPPRSRSSPRESRPF--NNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEP 60

Query: 97  QPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAK 156
           QP    RP++   DRSS  PR DPS+P +SK  PSR  P AP+P+++KLD  +   P   
Sbjct: 61  QPTVVKRPTKPT-DRSSNPPRIDPSRP-NSKLAPSR--PAAPSPNERKLDTKT--APKTT 120

Query: 157 TRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGG--SG 216
           TR +S RP KP        P PSK N KGA GSGSRSD S    K  DS+ G+     SG
Sbjct: 121 TRFSSPRPTKPIT------PPPSKSNGKGASGSGSRSDFSRA--KPSDSQKGTPKNLRSG 180

Query: 217 HRVDGDVGNPNRCYSDGHYYG-AFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSD 276
              D       R YSDG Y      DP V  KLHQLSLDDKDLAN+VLHAN +YES  S+
Sbjct: 181 RLNDQQDEQIVRSYSDGSYGARTLSDPDVH-KLHQLSLDDKDLANIVLHANLVYESLASE 240

Query: 277 TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCG 336
           T EE+CSSQ NN  +R+ QI+KEI+SH QGNSSITSYITKL  LWDEL  YID P+CSCG
Sbjct: 241 TNEEECSSQGNN-SSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCG 300

Query: 337 SIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQS 396
           S EK SEQI+REKVMQF++GL+DSYST CA+IL MKPFPTVEKAC  I+REEKRRE+V S
Sbjct: 301 STEKQSEQIEREKVMQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLS 360

Query: 397 LENFAEKVIQNNWLV-NGNFNNVDNND----GIKEQQIDHNEVACIPVEPLLIDLGSPVR 450
           LE  A KVIQNNWL+ NG+  N DN +     +++ + D NE   IP+EPLLIDLGSPVR
Sbjct: 361 LEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVR 403

BLAST of Sed0008984 vs. NCBI nr
Match: KAG7012356.1 (hypothetical protein SDJN02_25108, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 399.8 bits (1026), Expect = 3.1e-107
Identity = 252/421 (59.86%), Postives = 293/421 (69.60%), Query Frame = 0

Query: 37  MVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKET 96
           MVRGIISPPRSRSSPRE+RPF  NNN   NPPSRPNYMSP RRP T    ++ R  RKE 
Sbjct: 1   MVRGIISPPRSRSSPRESRPF--NNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEP 60

Query: 97  QPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAK 156
           QP    RP++   DRSS  PR DPS+P +SK  PSR  P AP+P+++KLD  +   P   
Sbjct: 61  QPTVVKRPTKPT-DRSSNPPRIDPSRP-NSKLAPSR--PAAPSPNERKLDTKT--APKTT 120

Query: 157 TRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGG--SG 216
           TR +S RP KP        P PSK N KGA GSGSRSD S    K  DS+ G+     SG
Sbjct: 121 TRFSSPRPTKPIT------PPPSKSNGKGASGSGSRSDFSRA--KPSDSQKGTPKNLRSG 180

Query: 217 HRVDGDVGNPNRCYSDGHYYG-AFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSD 276
              D       R YSDG Y      DP V  KLHQLSLDDKDLAN+VLHAN +YES  S+
Sbjct: 181 RLNDQQDEQIVRSYSDGSYGARTLSDPDVH-KLHQLSLDDKDLANIVLHANLVYESLASE 240

Query: 277 TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCG 336
           T EE+CSSQ NN  +R+ QI+KEI+SH QGNSSITSYITKL  LWDEL  YID P+CSCG
Sbjct: 241 TNEEECSSQGNN-SSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCG 300

Query: 337 SIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQS 396
           S +K SE+I+REKVMQF++GL+DSYST CA+IL MKPFPTVEKAC  I+REEKRRE+V S
Sbjct: 301 STQKQSEEIEREKVMQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLS 360

Query: 397 LENFAEKVIQNNWLV-NGNFNNVDNND----GIKEQQIDHNEVACIPVEPLLIDLGSPVR 450
           LE  A KVIQNNWL+ NG+  N DN +     +++ + D NE   IP+EPLLIDLGSPVR
Sbjct: 361 LEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVR 403

BLAST of Sed0008984 vs. NCBI nr
Match: XP_022137024.1 (uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137025.1 uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137026.1 uncharacterized protein LOC111008588 [Momordica charantia])

HSP 1 Score: 282.7 bits (722), Expect = 5.4e-72
Identity = 209/431 (48.49%), Postives = 269/431 (62.41%), Query Frame = 0

Query: 34  EQTMVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPR 93
           E+  +RG+ISPPRSRSSPR+ RP   +NN   NPPSRPNYMSP RRP TA    + ++ +
Sbjct: 45  EKMTLRGLISPPRSRSSPRDFRP---HNNGAPNPPSRPNYMSPRRRPTTA----EQQHTQ 104

Query: 94  KETQP-ATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSN-K 153
              +P AT  R ++ +P R   +P+  P+ PI    +PSRR  P    + KKLD  +  K
Sbjct: 105 THRKPSATATRATKKSPPRIRPSPK--PTAPI----VPSRRPNPNDLHNQKKLDTKTTPK 164

Query: 154 TPVAKTRPASSRPVKPGN-TTPARGPTPSKGNVKG------AIGSGSRSDASGLGHKYLD 213
              AK     ++P +  N   P RGPTP   N         AI S SRSD S   +    
Sbjct: 165 IGGAKPSSPRTQPQRLRNGVEPPRGPTPISKNTTPKPKPAIAIASASRSD-SPAANSSPS 224

Query: 214 SRNGSSGGSGHRVDGDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSLDDKDLANLVLHAN 273
           S++  S GS    D    +P   YS G  Y    DP +   L +LS+D KDLA+++LHAN
Sbjct: 225 SKHLPSPGSAQHHDMKNHSP---YSGG-TYTPLADPQLNNHLQRLSIDGKDLASIILHAN 284

Query: 274 SIYESFNSDTKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATY 333
           SIYES  SDT EE  S QSN    RI QI+K+I+SHRQ NSS+TSY TKL  LWDEL TY
Sbjct: 285 SIYESIGSDTMEE--SFQSN--APRIFQIYKDIASHRQENSSVTSYFTKLKILWDELETY 344

Query: 334 I-DVPQ-CSCGSIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVII 393
             DVPQ CSCG++EK S  ++REKVMQF++GL++SYST C +IL ++PFPT+EKA S+II
Sbjct: 345 SDDVPQCCSCGAMEKLSGHVEREKVMQFLMGLNNSYSTICPQILLIQPFPTMEKAYSIII 404

Query: 394 REEKRREVVQSLENFAEKVIQNNWLVNGNFNNVDNNDGIKEQ----QIDHNEVACIPVEP 450
           REEKR E+V SLE  A KV++N WL+  + ++   +DGI E+      D+ E+   P E 
Sbjct: 405 REEKRMELVTSLEMVAAKVMENKWLLQNDQSSNGYDDGIHEEVNGNTEDNVEIPSFPNES 453

BLAST of Sed0008984 vs. ExPASy TrEMBL
Match: A0A6J1GTG4 (serine/arginine repetitive matrix protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456959 PE=4 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 1.7e-108
Identity = 256/421 (60.81%), Postives = 295/421 (70.07%), Query Frame = 0

Query: 37  MVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKET 96
           MVRGIISPPRSRSSPRE+RPF  NNN   NPPSRPNYMSP RRP T    ++ R  RKE 
Sbjct: 1   MVRGIISPPRSRSSPRESRPF--NNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEP 60

Query: 97  QPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAK 156
           QP    RP++   DRSS  PR DPS+P +SK  PSR  P AP+P+++KLD  +   P   
Sbjct: 61  QPTVVKRPTKPT-DRSSNPPRIDPSRP-NSKLAPSR--PAAPSPNERKLDTKT--APKTT 120

Query: 157 TRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGG--SG 216
           TR +S RP KP   TP     PSK N KGA GSGSRSD S    K  DS+ G+     SG
Sbjct: 121 TRFSSPRPTKP--ITP-----PSKSNGKGASGSGSRSDFSRA--KPSDSQKGTPKNLRSG 180

Query: 217 HRVDGDVGNPNRCYSDGHYYG-AFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSD 276
              D       R YSDG Y      DP V  KLHQLSLDDKDLAN+VLHAN +YES  S+
Sbjct: 181 RLNDQQDEQIVRSYSDGSYGARTLSDPDVH-KLHQLSLDDKDLANIVLHANLVYESLASE 240

Query: 277 TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCG 336
           TKEE+CSSQ NN  +R+ QI+KEI+SH QGNSSITSYITKL  LWDEL  YID P+CSCG
Sbjct: 241 TKEEECSSQGNN-SSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCG 300

Query: 337 SIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQS 396
           S EK SEQI+REKVMQF++GL+DSYST CA+IL MKPFPTVEKAC  I+REEKRRE+V S
Sbjct: 301 STEKQSEQIEREKVMQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLS 360

Query: 397 LENFAEKVIQNNWLV-NGNFNNVDNND----GIKEQQIDHNEVACIPVEPLLIDLGSPVR 450
           LE  A KVIQNNWL+ NG+  N DN +     +++ + D NE   IP+EPLLIDLGSPVR
Sbjct: 361 LEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVR 402

BLAST of Sed0008984 vs. ExPASy TrEMBL
Match: A0A6J1C5Z8 (uncharacterized protein LOC111008588 OS=Momordica charantia OX=3673 GN=LOC111008588 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.6e-72
Identity = 209/431 (48.49%), Postives = 269/431 (62.41%), Query Frame = 0

Query: 34  EQTMVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPR 93
           E+  +RG+ISPPRSRSSPR+ RP   +NN   NPPSRPNYMSP RRP TA    + ++ +
Sbjct: 45  EKMTLRGLISPPRSRSSPRDFRP---HNNGAPNPPSRPNYMSPRRRPTTA----EQQHTQ 104

Query: 94  KETQP-ATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSN-K 153
              +P AT  R ++ +P R   +P+  P+ PI    +PSRR  P    + KKLD  +  K
Sbjct: 105 THRKPSATATRATKKSPPRIRPSPK--PTAPI----VPSRRPNPNDLHNQKKLDTKTTPK 164

Query: 154 TPVAKTRPASSRPVKPGN-TTPARGPTPSKGNVKG------AIGSGSRSDASGLGHKYLD 213
              AK     ++P +  N   P RGPTP   N         AI S SRSD S   +    
Sbjct: 165 IGGAKPSSPRTQPQRLRNGVEPPRGPTPISKNTTPKPKPAIAIASASRSD-SPAANSSPS 224

Query: 214 SRNGSSGGSGHRVDGDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSLDDKDLANLVLHAN 273
           S++  S GS    D    +P   YS G  Y    DP +   L +LS+D KDLA+++LHAN
Sbjct: 225 SKHLPSPGSAQHHDMKNHSP---YSGG-TYTPLADPQLNNHLQRLSIDGKDLASIILHAN 284

Query: 274 SIYESFNSDTKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATY 333
           SIYES  SDT EE  S QSN    RI QI+K+I+SHRQ NSS+TSY TKL  LWDEL TY
Sbjct: 285 SIYESIGSDTMEE--SFQSN--APRIFQIYKDIASHRQENSSVTSYFTKLKILWDELETY 344

Query: 334 I-DVPQ-CSCGSIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVII 393
             DVPQ CSCG++EK S  ++REKVMQF++GL++SYST C +IL ++PFPT+EKA S+II
Sbjct: 345 SDDVPQCCSCGAMEKLSGHVEREKVMQFLMGLNNSYSTICPQILLIQPFPTMEKAYSIII 404

Query: 394 REEKRREVVQSLENFAEKVIQNNWLVNGNFNNVDNNDGIKEQ----QIDHNEVACIPVEP 450
           REEKR E+V SLE  A KV++N WL+  + ++   +DGI E+      D+ E+   P E 
Sbjct: 405 REEKRMELVTSLEMVAAKVMENKWLLQNDQSSNGYDDGIHEEVNGNTEDNVEIPSFPNES 453

BLAST of Sed0008984 vs. ExPASy TrEMBL
Match: A0A6J1C7L7 (uncharacterized protein LOC111008986 OS=Momordica charantia OX=3673 GN=LOC111008986 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 8.8e-44
Identity = 149/350 (42.57%), Postives = 191/350 (54.57%), Query Frame = 0

Query: 39  RGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKETQP 98
           RG+ISPP+SR S  E+   ++ NNA ANPPS PNYMS  RR   A   +  +     T+P
Sbjct: 7   RGLISPPKSRFSVTES---DSQNNAAANPPSMPNYMSATRRSTAARVVNPKQQQTTHTKP 66

Query: 99  ATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPP-APNPHDKKLDANSNKTPVAKT 158
             G          S+    T  S P  +  +PSRR P  APN  +   D ++ K  +AK 
Sbjct: 67  TFG----------SNAIRATKNSSPKPTPVVPSRRRPTWAPNNPNGHNDNSTTKLTIAKI 126

Query: 159 RPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGGSGHRV 218
             + +  V      P RGPT                         +   +GSS GSGH  
Sbjct: 127 TTSRNSNVNGVQQQP-RGPT------------------------LISVASGSSHGSGHHQ 186

Query: 219 DGDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSDTKEE 278
           D +  N      D         P V  +L QLS+D K  A +V  ANS+ ES    TKEE
Sbjct: 187 DANNNNIEGEEEDS--TTVIGHPHVINQLQQLSIDGKHHAKMVFRANSMDESVGPYTKEE 246

Query: 279 QCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCGSI-- 338
            CS QSN    RIL+I+K+I+SHRQGNSSITSY TKL  LW+EL TY D+PQC   S   
Sbjct: 247 -CSPQSN--AERILEIYKDIASHRQGNSSITSYFTKLETLWEELETYSDLPQCCSYSATD 306

Query: 339 EKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREE 386
           +K S+ ++REKVMQF+VGL+DSYST C++IL ++PFPTVEKA S+II +E
Sbjct: 307 QKPSKLVEREKVMQFLVGLNDSYSTICSQILLIRPFPTVEKAYSIIIMQE 313

BLAST of Sed0008984 vs. ExPASy TrEMBL
Match: A0A6J1C6T8 (uncharacterized protein LOC111008934 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008934 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.7e-35
Identity = 150/380 (39.47%), Postives = 190/380 (50.00%), Query Frame = 0

Query: 39  RGIISPPRSRSSPRENRPFNNNNNATANPPSRPNY-MSPCRRPATATPASDPRNPRKETQ 98
           RG+ISPPR+ S P         NNA ANPP RPNY MSP  RP T    S+        +
Sbjct: 4   RGLISPPRAFSGP---------NNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLK 63

Query: 99  PATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNP-----HDKKLDANSNKT 158
             +           SS A R     P              PNP     H KKLD N+N  
Sbjct: 64  ATS-----------SSNAIRATHIAP--------------PNPYDLQNHQKKLDHNNNNN 123

Query: 159 PVAKTR---PASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRS---DASGLGHKYLDSR 218
              KT    P   + ++ G T  +    P     KG   SGSRS   DA+ +  K+ DS 
Sbjct: 124 SSTKTTAPPPTRHQRLRNGATLISNNTAP---RPKGPTASGSRSDPLDANLIAPKFSDSP 183

Query: 219 NGSS------GGSGHRVD-GDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSL-----DDK 278
           N SS       GSG R +  +VGN     + G  Y +   P +   LH+LS      +D 
Sbjct: 184 NNSSPNHLSIHGSGQRQNISNVGN-----NGGTAYTSLAHPQLNNHLHKLSRGGSGGNDG 243

Query: 279 DLA-------NLVLHANSIYESFNSDTKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSI 338
            +        ++VLH+              +CSSQSN    RI +I+K+I+SHRQGNSSI
Sbjct: 244 KIPIYGGQDDHIVLHS--------------KCSSQSN--VPRIFEIYKDIASHRQGNSSI 303

Query: 339 TSYITKLNKLWDELATYIDVPQCSCGSIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILD 388
           TSY T+L  LWDEL TY D+ QC       S E ++REKVMQF+VGL+D YST C +IL 
Sbjct: 304 TSYFTRLKTLWDELETYNDLSQCC-----SSGEHVEREKVMQFLVGLNDPYSTICHQILL 320

BLAST of Sed0008984 vs. ExPASy TrEMBL
Match: A0A6J1C6U3 (uncharacterized protein LOC111008934 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008934 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.8e-35
Identity = 148/375 (39.47%), Postives = 187/375 (49.87%), Query Frame = 0

Query: 39  RGIISPPRSRSSPRENRPFNNNNNATANPPSRPNY-MSPCRRPATATPASDPRNPRKETQ 98
           RG+ISPPR+ S P         NNA ANPP RPNY MSP  RP T    S+        +
Sbjct: 4   RGLISPPRAFSGP---------NNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLK 63

Query: 99  PATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNP-----HDKKLDANSNKT 158
             +           SS A R     P              PNP     H KKLD N+N  
Sbjct: 64  ATS-----------SSNAIRATHIAP--------------PNPYDLQNHQKKLDHNNNNN 123

Query: 159 PVAKTR---PASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRS---DASGLGHKYLDSR 218
              KT    P   + ++ G T  +    P     KG   SGSRS   DA+ +  K+ DS 
Sbjct: 124 SSTKTTAPPPTRHQRLRNGATLISNNTAP---RPKGPTASGSRSDPLDANLIAPKFSDSP 183

Query: 219 NGSS------GGSGHRVD-GDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSL----DDKD 278
           N SS       GSG R +  +VGN     + G  Y +   P +   LH+LS      +  
Sbjct: 184 NNSSPNHLSIHGSGQRQNISNVGN-----NGGTAYTSLAHPQLNNHLHKLSRGGSGGNDA 243

Query: 279 LANLVLHANSIYESFNSD---TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYIT 338
              + ++   I      D       +CSSQSN    RI +I+K+I+SHRQGNSSITSY T
Sbjct: 244 YPEIPIYVGKIPIYGGQDDHIVLHSKCSSQSN--VPRIFEIYKDIASHRQGNSSITSYFT 303

Query: 339 KLNKLWDELATYIDVPQCSCGSIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFP 388
           +L  LWDEL TY D+ QC       S E ++REKVMQF+VGL+D YST C +IL ++PFP
Sbjct: 304 RLKTLWDELETYNDLSQCC-----SSGEHVEREKVMQFLVGLNDPYSTICHQILLIRPFP 329

BLAST of Sed0008984 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 8.2e-10
Identity = 29/103 (28.16%), Postives = 60/103 (58.25%), Query Frame = 0

Query: 286 IGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCGS-----IEKSSE 345
           +  +I Q+ + +++ RQG  S+  Y  KL+K+W EL+ Y  +P+C CG       +++ E
Sbjct: 123 VDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEE 182

Query: 346 QIQREKVMQFVVG--LDDSYSTFCAKILDMKPFPTVEKACSVI 382
             ++E+  +F++G  L+  +     KI+  KP P++ +A +++
Sbjct: 183 AREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMV 225

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023542694.18.6e-11060.57uncharacterized protein LOC111802521 [Cucurbita pepo subsp. pepo][more]
XP_022954810.13.6e-10860.81serine/arginine repetitive matrix protein 1-like [Cucurbita moschata][more]
KAG6573173.16.2e-10860.33hypothetical protein SDJN03_27060, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7012356.13.1e-10759.86hypothetical protein SDJN02_25108, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022137024.15.4e-7248.49uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137025.1 uncha... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GTG41.7e-10860.81serine/arginine repetitive matrix protein 1-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1C5Z82.6e-7248.49uncharacterized protein LOC111008588 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A6J1C7L78.8e-4442.57uncharacterized protein LOC111008986 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A6J1C6T85.7e-3539.47uncharacterized protein LOC111008934 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1C6U39.8e-3539.47uncharacterized protein LOC111008934 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
AT1G21280.18.2e-1028.16CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..223
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..177
NoneNo IPR availablePANTHERPTHR34222:SF6OS02G0671800 PROTEINcoord: 241..400
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 241..400

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0008984.1Sed0008984.1mRNA