Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGACTTGACCCGAAAAACCCCTCCATTCCACATCTAAGAGAATGACAGGATCGCATCGTGGCCGTCAAATTTGTTCACTTGGTAGTTTACCAGAAAACAGAGCACAGAAAAGGCAGGTCTGTTTAGACGAGATCGGAGCAGAGCAAACAATGGTGAGAGGAATTATCAGTCCCCCAAGATCCCGTTCTTCTCCAAGAGAAAACAGACCTTTCAATAATAACAACAATGCCACCGCCAATCCACCCTCCAGACCCAACTACATGTCTCCTTGTCGCCGCCCGGCAACGGCAACGCCCGCCTCCGATCCACGAAATCCCAGAAAAGAAACCCAACCCGCCACCGGTCCACGCCCCAGCAGAACCAACCCCGACAGATCTTCAACCGCTCCCCGAACCGACCCATCCAAACCCATTTCTTCCAAGCCCCTGCCCTCGAGGCGAACACCACCAGCCCCAAATCCTCACGACAAGAAATTAGACGCCAACAGCAACAAAACGCCGGTCGCTAAAACCCGACCGGCTTCCTCTCGCCCGGTCAAACCGGGAAATACTACACCGGCGCGTGGGCCCACGCCTTCGAAGGGAAATGTGAAGGGAGCCATCGGGTCTGGTTCCAGATCCGATGCTTCCGGTTTGGGTCATAAGTACTTAGATTCTCGAAATGGTTCCAGCGGCGGGTCGGGTCATCGGGTGGACGGGGATGTTGGAAACCCGAACCGTTGTTATTCGGATGGACATTATTATGGTGCGTTTCGTGATCCTGCTGTTCGTGCTAAGTTGCATCAGCTTTCTTTAGATGGTGAGCTTTTATTATACTTCTACCTCTTTACTTCTTTTATTTAAATGGCTTGACGATTTAGCTTTAAAATGTTGCAAATGGTTGGTTCTGGTTAAATTTTGTTTATAACTTCCATAGGTTGATCGCATAATACTTGGATCAAAGAATACATTTTTAATACCATCTATTTATTAACTGTCCCCAAAGCACACCCTAACAGATGAGCCTAAGAATTTCAAGGCATTCTTTTTTGAAAGAATAACGAATAACGAAGTATAGAGTTCGAGTATAGGAGAGCGAAGTTCCAATTAAACTAGAATAACGAAGTATCCTAGCGGCCACAGTCTAGTGCCCGAGTATCGGAGAGCGAAGTTCCGATTTTTCAATTTTCAACAAAAAAAAAACATGCATTTAACTTTTCTTTTGATAACTTTATGATGCCAAAGTGCAGCCCGTAACTATTTCAAGTAAACTTACTTGCATCTTGGCTAATTTTAAGGGATTCTACACTATTTCATTGAAATCTTTAAATCTTATTAATCATTTGACCTAACTTATGATAATTTGCTTACTTTTTTTTGGTACGATAATTTTCTTACTTTGCCATTAGTGGATTGATGTTTTAAAAATTATCATAATAATTGAGAAAGAAAGATTTTGGATTGATAACTTCTTCTTAATGAGAGTATTAAATTATGATGTTGTTGACATTAATGATTTGCTTCTAAATTAGCCTAGGACATACCAAATAGTTATTAGCATTCATATTGAGGATGGAATTACAATTTAGAGGTTGGAACTTAGAAGCTAAAGTCCAATTTTTTTGTGGAGAAATAGAATTTGACATTTCTTATATCTCTCTTTTTTGGGGTAAAAATGAGGAAGAAAACTATAATTCTTAATTTTTATGTTTTTTTTTTGGCAAACCTAAGATGAACTAGATTTGTATTAACTCTTGTTCTTGAAAATCTTGTGTAGACAAAGATCTTGCAAACCTCGTCCTTCACGCAAATTCGATATATGAATCATTCAATTCAGATACAAAGGAAGAACAATGTAGTTCTCAAAGCAACAACATTGGTACAAGAATACTTCAAATCTTCAAAGAAATTTCATCTCACCGTCAAGGAAACTCCTCCATCACATCCTACATTACAAAGCTAAATAAATTATGGGACGAACTCGCAACCTACATCGACGTGCCTCAATGTTCTTGTGGTTCTATCGAGAAGTCAAGCGAGCAAATACAAAGGGAAAAAGTAATGCAATTTGTCGTCGGATTAGACGATTCTTATTCCACATTTTGCGCGAAAATCCTCGACATGAAGCCATTTCCAACCGTGGAGAAAGCTTGTTCTGTGATAATTCGAGAAGAAAAACGCAGAGAAGTGGTTCAGTCATTGGAAAATTTTGCTGAGAAAGTAATTCAAAACAATTGGCTTGTTAATGGGAACTTCAACAATGTTGATAATAATGATGGTATTAAGGAGCAACAAATTGATCATAATGAAGTTGCATGCATCCCTGTTGAGCCATTGCTGATTGATCTTGGCTCTCCTGTTCGTTGTTGAATATTTTCAGCTAAATCTAAGGTTATACTTTTTTTTACATGTTTCATGATTGTTCAATATTTTGTTGAATTACATTTTTCTAATATTTTGTGTGTATTTTTTTTTCAGGAATAATTCGAGGATAAAAGTATACTACTTTTCTAAACTATTAATTATTATGAAGAGGCTTCTAGTGGAAAAACTAAACCTTGTTGGGTAGGAGTTTGTGTGCTTTTTCTTTTTATGTAGTTTATTTGTAGTGGATGAAAATATTAGTGGGATTTAGCAATATAATTGTTTACTAATAAATCAAGTAGGAACTTTTTCTTTTTAA
mRNA sequence
GTTGACTTGACCCGAAAAACCCCTCCATTCCACATCTAAGAGAATGACAGGATCGCATCGTGGCCGTCAAATTTGTTCACTTGGTAGTTTACCAGAAAACAGAGCACAGAAAAGGCAGGTCTGTTTAGACGAGATCGGAGCAGAGCAAACAATGGTGAGAGGAATTATCAGTCCCCCAAGATCCCGTTCTTCTCCAAGAGAAAACAGACCTTTCAATAATAACAACAATGCCACCGCCAATCCACCCTCCAGACCCAACTACATGTCTCCTTGTCGCCGCCCGGCAACGGCAACGCCCGCCTCCGATCCACGAAATCCCAGAAAAGAAACCCAACCCGCCACCGGTCCACGCCCCAGCAGAACCAACCCCGACAGATCTTCAACCGCTCCCCGAACCGACCCATCCAAACCCATTTCTTCCAAGCCCCTGCCCTCGAGGCGAACACCACCAGCCCCAAATCCTCACGACAAGAAATTAGACGCCAACAGCAACAAAACGCCGGTCGCTAAAACCCGACCGGCTTCCTCTCGCCCGGTCAAACCGGGAAATACTACACCGGCGCGTGGGCCCACGCCTTCGAAGGGAAATGTGAAGGGAGCCATCGGGTCTGGTTCCAGATCCGATGCTTCCGGTTTGGGTCATAAGTACTTAGATTCTCGAAATGGTTCCAGCGGCGGGTCGGGTCATCGGGTGGACGGGGATGTTGGAAACCCGAACCGTTGTTATTCGGATGGACATTATTATGGTGCGTTTCGTGATCCTGCTGTTCGTGCTAAGTTGCATCAGCTTTCTTTAGATGACAAAGATCTTGCAAACCTCGTCCTTCACGCAAATTCGATATATGAATCATTCAATTCAGATACAAAGGAAGAACAATGTAGTTCTCAAAGCAACAACATTGGTACAAGAATACTTCAAATCTTCAAAGAAATTTCATCTCACCGTCAAGGAAACTCCTCCATCACATCCTACATTACAAAGCTAAATAAATTATGGGACGAACTCGCAACCTACATCGACGTGCCTCAATGTTCTTGTGGTTCTATCGAGAAGTCAAGCGAGCAAATACAAAGGGAAAAAGTAATGCAATTTGTCGTCGGATTAGACGATTCTTATTCCACATTTTGCGCGAAAATCCTCGACATGAAGCCATTTCCAACCGTGGAGAAAGCTTGTTCTGTGATAATTCGAGAAGAAAAACGCAGAGAAGTGGTTCAGTCATTGGAAAATTTTGCTGAGAAAGTAATTCAAAACAATTGGCTTGTTAATGGGAACTTCAACAATGTTGATAATAATGATGGTATTAAGGAGCAACAAATTGATCATAATGAAGTTGCATGCATCCCTGTTGAGCCATTGCTGATTGATCTTGGCTCTCCTGTTCGTTGTTGAATATTTTCAGCTAAATCTAAGGAATAATTCGAGGATAAAAGTATACTACTTTTCTAAACTATTAATTATTATGAAGAGGCTTCTAGTGGAAAAACTAAACCTTGTTGGGTAGGAGTTTGTGTGCTTTTTCTTTTTATGTAGTTTATTTGTAGTGGATGAAAATATTAGTGGGATTTAGCAATATAATTGTTTACTAATAAATCAAGTAGGAACTTTTTCTTTTTAA
Coding sequence (CDS)
ATGACAGGATCGCATCGTGGCCGTCAAATTTGTTCACTTGGTAGTTTACCAGAAAACAGAGCACAGAAAAGGCAGGTCTGTTTAGACGAGATCGGAGCAGAGCAAACAATGGTGAGAGGAATTATCAGTCCCCCAAGATCCCGTTCTTCTCCAAGAGAAAACAGACCTTTCAATAATAACAACAATGCCACCGCCAATCCACCCTCCAGACCCAACTACATGTCTCCTTGTCGCCGCCCGGCAACGGCAACGCCCGCCTCCGATCCACGAAATCCCAGAAAAGAAACCCAACCCGCCACCGGTCCACGCCCCAGCAGAACCAACCCCGACAGATCTTCAACCGCTCCCCGAACCGACCCATCCAAACCCATTTCTTCCAAGCCCCTGCCCTCGAGGCGAACACCACCAGCCCCAAATCCTCACGACAAGAAATTAGACGCCAACAGCAACAAAACGCCGGTCGCTAAAACCCGACCGGCTTCCTCTCGCCCGGTCAAACCGGGAAATACTACACCGGCGCGTGGGCCCACGCCTTCGAAGGGAAATGTGAAGGGAGCCATCGGGTCTGGTTCCAGATCCGATGCTTCCGGTTTGGGTCATAAGTACTTAGATTCTCGAAATGGTTCCAGCGGCGGGTCGGGTCATCGGGTGGACGGGGATGTTGGAAACCCGAACCGTTGTTATTCGGATGGACATTATTATGGTGCGTTTCGTGATCCTGCTGTTCGTGCTAAGTTGCATCAGCTTTCTTTAGATGACAAAGATCTTGCAAACCTCGTCCTTCACGCAAATTCGATATATGAATCATTCAATTCAGATACAAAGGAAGAACAATGTAGTTCTCAAAGCAACAACATTGGTACAAGAATACTTCAAATCTTCAAAGAAATTTCATCTCACCGTCAAGGAAACTCCTCCATCACATCCTACATTACAAAGCTAAATAAATTATGGGACGAACTCGCAACCTACATCGACGTGCCTCAATGTTCTTGTGGTTCTATCGAGAAGTCAAGCGAGCAAATACAAAGGGAAAAAGTAATGCAATTTGTCGTCGGATTAGACGATTCTTATTCCACATTTTGCGCGAAAATCCTCGACATGAAGCCATTTCCAACCGTGGAGAAAGCTTGTTCTGTGATAATTCGAGAAGAAAAACGCAGAGAAGTGGTTCAGTCATTGGAAAATTTTGCTGAGAAAGTAATTCAAAACAATTGGCTTGTTAATGGGAACTTCAACAATGTTGATAATAATGATGGTATTAAGGAGCAACAAATTGATCATAATGAAGTTGCATGCATCCCTGTTGAGCCATTGCTGATTGATCTTGGCTCTCCTGTTCGTTGTTGA
Protein sequence
MTGSHRGRQICSLGSLPENRAQKRQVCLDEIGAEQTMVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKETQPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAKTRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGGSGHRVDGDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSDTKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCGSIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQSLENFAEKVIQNNWLVNGNFNNVDNNDGIKEQQIDHNEVACIPVEPLLIDLGSPVRC
Homology
BLAST of Sed0008984 vs. NCBI nr
Match:
XP_023542694.1 (uncharacterized protein LOC111802521 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 408.3 bits (1048), Expect = 8.6e-110
Identity = 255/421 (60.57%), Postives = 297/421 (70.55%), Query Frame = 0
Query: 37 MVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKET 96
MVRGIISPPRSRSSPRE+RPF NNN NPPSRPNYMSP RRP T A++ R RKE
Sbjct: 1 MVRGIISPPRSRSSPRESRPF--NNNGATNPPSRPNYMSPRRRPTTPINANELRTHRKEP 60
Query: 97 QPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAK 156
QP RP++ DRSS PR DPS+P +SK +PSR P AP+P+++KLD + P
Sbjct: 61 QPTVVKRPTKPT-DRSSNPPRIDPSRP-NSKLVPSR--PAAPSPNERKLDTKT--APKTT 120
Query: 157 TRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGG--SG 216
TR +S RP KP P PSK N KGA GSGSRSD S K DS+ G+ SG
Sbjct: 121 TRFSSPRPTKPIT------PPPSKSNGKGASGSGSRSDFSRA--KPSDSQKGTPKNLRSG 180
Query: 217 HRVDGDVGNPNRCYSDGHYYG-AFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSD 276
D R YSDG Y DP V KLHQLSLDDKDLAN+VLHAN +YES S+
Sbjct: 181 RLNDQQDEQIVRSYSDGSYGARTLSDPDVH-KLHQLSLDDKDLANIVLHANLVYESLASE 240
Query: 277 TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCG 336
TKEE+CSSQ NN +R+ QI+KEI+SH QGNSSITSYITKL LWDEL YID+P+CSCG
Sbjct: 241 TKEEECSSQGNN-SSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDIPKCSCG 300
Query: 337 SIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQS 396
S +K SE+I+REKVMQF++GLDDSYST CA+IL MKPFPTVEKAC I+REEKRRE+V S
Sbjct: 301 STQKQSEEIEREKVMQFLIGLDDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLS 360
Query: 397 LENFAEKVIQNNWLV-NGNFNNVDNND----GIKEQQIDHNEVACIPVEPLLIDLGSPVR 450
LE A KVIQNNWL+ NG+ N DN + ++E + D NE +P+EPLLIDLGSPVR
Sbjct: 361 LEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQELKADQNEAMSVPIEPLLIDLGSPVR 403
BLAST of Sed0008984 vs. NCBI nr
Match:
XP_022954810.1 (serine/arginine repetitive matrix protein 1-like [Cucurbita moschata])
HSP 1 Score: 402.9 bits (1034), Expect = 3.6e-108
Identity = 256/421 (60.81%), Postives = 295/421 (70.07%), Query Frame = 0
Query: 37 MVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKET 96
MVRGIISPPRSRSSPRE+RPF NNN NPPSRPNYMSP RRP T ++ R RKE
Sbjct: 1 MVRGIISPPRSRSSPRESRPF--NNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEP 60
Query: 97 QPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAK 156
QP RP++ DRSS PR DPS+P +SK PSR P AP+P+++KLD + P
Sbjct: 61 QPTVVKRPTKPT-DRSSNPPRIDPSRP-NSKLAPSR--PAAPSPNERKLDTKT--APKTT 120
Query: 157 TRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGG--SG 216
TR +S RP KP TP PSK N KGA GSGSRSD S K DS+ G+ SG
Sbjct: 121 TRFSSPRPTKP--ITP-----PSKSNGKGASGSGSRSDFSRA--KPSDSQKGTPKNLRSG 180
Query: 217 HRVDGDVGNPNRCYSDGHYYG-AFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSD 276
D R YSDG Y DP V KLHQLSLDDKDLAN+VLHAN +YES S+
Sbjct: 181 RLNDQQDEQIVRSYSDGSYGARTLSDPDVH-KLHQLSLDDKDLANIVLHANLVYESLASE 240
Query: 277 TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCG 336
TKEE+CSSQ NN +R+ QI+KEI+SH QGNSSITSYITKL LWDEL YID P+CSCG
Sbjct: 241 TKEEECSSQGNN-SSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCG 300
Query: 337 SIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQS 396
S EK SEQI+REKVMQF++GL+DSYST CA+IL MKPFPTVEKAC I+REEKRRE+V S
Sbjct: 301 STEKQSEQIEREKVMQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLS 360
Query: 397 LENFAEKVIQNNWLV-NGNFNNVDNND----GIKEQQIDHNEVACIPVEPLLIDLGSPVR 450
LE A KVIQNNWL+ NG+ N DN + +++ + D NE IP+EPLLIDLGSPVR
Sbjct: 361 LEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVR 402
BLAST of Sed0008984 vs. NCBI nr
Match:
KAG6573173.1 (hypothetical protein SDJN03_27060, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 402.1 bits (1032), Expect = 6.2e-108
Identity = 254/421 (60.33%), Postives = 293/421 (69.60%), Query Frame = 0
Query: 37 MVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKET 96
MVRGIISPPRSRSSPRE+RPF NNN NPPSRPNYMSP RRP T ++ R RKE
Sbjct: 1 MVRGIISPPRSRSSPRESRPF--NNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEP 60
Query: 97 QPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAK 156
QP RP++ DRSS PR DPS+P +SK PSR P AP+P+++KLD + P
Sbjct: 61 QPTVVKRPTKPT-DRSSNPPRIDPSRP-NSKLAPSR--PAAPSPNERKLDTKT--APKTT 120
Query: 157 TRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGG--SG 216
TR +S RP KP P PSK N KGA GSGSRSD S K DS+ G+ SG
Sbjct: 121 TRFSSPRPTKPIT------PPPSKSNGKGASGSGSRSDFSRA--KPSDSQKGTPKNLRSG 180
Query: 217 HRVDGDVGNPNRCYSDGHYYG-AFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSD 276
D R YSDG Y DP V KLHQLSLDDKDLAN+VLHAN +YES S+
Sbjct: 181 RLNDQQDEQIVRSYSDGSYGARTLSDPDVH-KLHQLSLDDKDLANIVLHANLVYESLASE 240
Query: 277 TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCG 336
T EE+CSSQ NN +R+ QI+KEI+SH QGNSSITSYITKL LWDEL YID P+CSCG
Sbjct: 241 TNEEECSSQGNN-SSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCG 300
Query: 337 SIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQS 396
S EK SEQI+REKVMQF++GL+DSYST CA+IL MKPFPTVEKAC I+REEKRRE+V S
Sbjct: 301 STEKQSEQIEREKVMQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLS 360
Query: 397 LENFAEKVIQNNWLV-NGNFNNVDNND----GIKEQQIDHNEVACIPVEPLLIDLGSPVR 450
LE A KVIQNNWL+ NG+ N DN + +++ + D NE IP+EPLLIDLGSPVR
Sbjct: 361 LEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVR 403
BLAST of Sed0008984 vs. NCBI nr
Match:
KAG7012356.1 (hypothetical protein SDJN02_25108, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 399.8 bits (1026), Expect = 3.1e-107
Identity = 252/421 (59.86%), Postives = 293/421 (69.60%), Query Frame = 0
Query: 37 MVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKET 96
MVRGIISPPRSRSSPRE+RPF NNN NPPSRPNYMSP RRP T ++ R RKE
Sbjct: 1 MVRGIISPPRSRSSPRESRPF--NNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEP 60
Query: 97 QPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAK 156
QP RP++ DRSS PR DPS+P +SK PSR P AP+P+++KLD + P
Sbjct: 61 QPTVVKRPTKPT-DRSSNPPRIDPSRP-NSKLAPSR--PAAPSPNERKLDTKT--APKTT 120
Query: 157 TRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGG--SG 216
TR +S RP KP P PSK N KGA GSGSRSD S K DS+ G+ SG
Sbjct: 121 TRFSSPRPTKPIT------PPPSKSNGKGASGSGSRSDFSRA--KPSDSQKGTPKNLRSG 180
Query: 217 HRVDGDVGNPNRCYSDGHYYG-AFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSD 276
D R YSDG Y DP V KLHQLSLDDKDLAN+VLHAN +YES S+
Sbjct: 181 RLNDQQDEQIVRSYSDGSYGARTLSDPDVH-KLHQLSLDDKDLANIVLHANLVYESLASE 240
Query: 277 TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCG 336
T EE+CSSQ NN +R+ QI+KEI+SH QGNSSITSYITKL LWDEL YID P+CSCG
Sbjct: 241 TNEEECSSQGNN-SSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCG 300
Query: 337 SIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQS 396
S +K SE+I+REKVMQF++GL+DSYST CA+IL MKPFPTVEKAC I+REEKRRE+V S
Sbjct: 301 STQKQSEEIEREKVMQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLS 360
Query: 397 LENFAEKVIQNNWLV-NGNFNNVDNND----GIKEQQIDHNEVACIPVEPLLIDLGSPVR 450
LE A KVIQNNWL+ NG+ N DN + +++ + D NE IP+EPLLIDLGSPVR
Sbjct: 361 LEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVR 403
BLAST of Sed0008984 vs. NCBI nr
Match:
XP_022137024.1 (uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137025.1 uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137026.1 uncharacterized protein LOC111008588 [Momordica charantia])
HSP 1 Score: 282.7 bits (722), Expect = 5.4e-72
Identity = 209/431 (48.49%), Postives = 269/431 (62.41%), Query Frame = 0
Query: 34 EQTMVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPR 93
E+ +RG+ISPPRSRSSPR+ RP +NN NPPSRPNYMSP RRP TA + ++ +
Sbjct: 45 EKMTLRGLISPPRSRSSPRDFRP---HNNGAPNPPSRPNYMSPRRRPTTA----EQQHTQ 104
Query: 94 KETQP-ATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSN-K 153
+P AT R ++ +P R +P+ P+ PI +PSRR P + KKLD + K
Sbjct: 105 THRKPSATATRATKKSPPRIRPSPK--PTAPI----VPSRRPNPNDLHNQKKLDTKTTPK 164
Query: 154 TPVAKTRPASSRPVKPGN-TTPARGPTPSKGNVKG------AIGSGSRSDASGLGHKYLD 213
AK ++P + N P RGPTP N AI S SRSD S +
Sbjct: 165 IGGAKPSSPRTQPQRLRNGVEPPRGPTPISKNTTPKPKPAIAIASASRSD-SPAANSSPS 224
Query: 214 SRNGSSGGSGHRVDGDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSLDDKDLANLVLHAN 273
S++ S GS D +P YS G Y DP + L +LS+D KDLA+++LHAN
Sbjct: 225 SKHLPSPGSAQHHDMKNHSP---YSGG-TYTPLADPQLNNHLQRLSIDGKDLASIILHAN 284
Query: 274 SIYESFNSDTKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATY 333
SIYES SDT EE S QSN RI QI+K+I+SHRQ NSS+TSY TKL LWDEL TY
Sbjct: 285 SIYESIGSDTMEE--SFQSN--APRIFQIYKDIASHRQENSSVTSYFTKLKILWDELETY 344
Query: 334 I-DVPQ-CSCGSIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVII 393
DVPQ CSCG++EK S ++REKVMQF++GL++SYST C +IL ++PFPT+EKA S+II
Sbjct: 345 SDDVPQCCSCGAMEKLSGHVEREKVMQFLMGLNNSYSTICPQILLIQPFPTMEKAYSIII 404
Query: 394 REEKRREVVQSLENFAEKVIQNNWLVNGNFNNVDNNDGIKEQ----QIDHNEVACIPVEP 450
REEKR E+V SLE A KV++N WL+ + ++ +DGI E+ D+ E+ P E
Sbjct: 405 REEKRMELVTSLEMVAAKVMENKWLLQNDQSSNGYDDGIHEEVNGNTEDNVEIPSFPNES 453
BLAST of Sed0008984 vs. ExPASy TrEMBL
Match:
A0A6J1GTG4 (serine/arginine repetitive matrix protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111456959 PE=4 SV=1)
HSP 1 Score: 402.9 bits (1034), Expect = 1.7e-108
Identity = 256/421 (60.81%), Postives = 295/421 (70.07%), Query Frame = 0
Query: 37 MVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKET 96
MVRGIISPPRSRSSPRE+RPF NNN NPPSRPNYMSP RRP T ++ R RKE
Sbjct: 1 MVRGIISPPRSRSSPRESRPF--NNNGATNPPSRPNYMSPRRRPTTPINPNELRTHRKEP 60
Query: 97 QPATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSNKTPVAK 156
QP RP++ DRSS PR DPS+P +SK PSR P AP+P+++KLD + P
Sbjct: 61 QPTVVKRPTKPT-DRSSNPPRIDPSRP-NSKLAPSR--PAAPSPNERKLDTKT--APKTT 120
Query: 157 TRPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGG--SG 216
TR +S RP KP TP PSK N KGA GSGSRSD S K DS+ G+ SG
Sbjct: 121 TRFSSPRPTKP--ITP-----PSKSNGKGASGSGSRSDFSRA--KPSDSQKGTPKNLRSG 180
Query: 217 HRVDGDVGNPNRCYSDGHYYG-AFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSD 276
D R YSDG Y DP V KLHQLSLDDKDLAN+VLHAN +YES S+
Sbjct: 181 RLNDQQDEQIVRSYSDGSYGARTLSDPDVH-KLHQLSLDDKDLANIVLHANLVYESLASE 240
Query: 277 TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCG 336
TKEE+CSSQ NN +R+ QI+KEI+SH QGNSSITSYITKL LWDEL YID P+CSCG
Sbjct: 241 TKEEECSSQGNN-SSRMFQIYKEIASHHQGNSSITSYITKLKALWDELEAYIDTPKCSCG 300
Query: 337 SIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREEKRREVVQS 396
S EK SEQI+REKVMQF++GL+DSYST CA+IL MKPFPTVEKAC I+REEKRRE+V S
Sbjct: 301 STEKQSEQIEREKVMQFLIGLNDSYSTICAQILHMKPFPTVEKACCAILREEKRRELVLS 360
Query: 397 LENFAEKVIQNNWLV-NGNFNNVDNND----GIKEQQIDHNEVACIPVEPLLIDLGSPVR 450
LE A KVIQNNWL+ NG+ N DN + +++ + D NE IP+EPLLIDLGSPVR
Sbjct: 361 LEIVAAKVIQNNWLLQNGHSINGDNEEVDHMNLQDLKADQNEAMSIPIEPLLIDLGSPVR 402
BLAST of Sed0008984 vs. ExPASy TrEMBL
Match:
A0A6J1C5Z8 (uncharacterized protein LOC111008588 OS=Momordica charantia OX=3673 GN=LOC111008588 PE=4 SV=1)
HSP 1 Score: 282.7 bits (722), Expect = 2.6e-72
Identity = 209/431 (48.49%), Postives = 269/431 (62.41%), Query Frame = 0
Query: 34 EQTMVRGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPR 93
E+ +RG+ISPPRSRSSPR+ RP +NN NPPSRPNYMSP RRP TA + ++ +
Sbjct: 45 EKMTLRGLISPPRSRSSPRDFRP---HNNGAPNPPSRPNYMSPRRRPTTA----EQQHTQ 104
Query: 94 KETQP-ATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNPHDKKLDANSN-K 153
+P AT R ++ +P R +P+ P+ PI +PSRR P + KKLD + K
Sbjct: 105 THRKPSATATRATKKSPPRIRPSPK--PTAPI----VPSRRPNPNDLHNQKKLDTKTTPK 164
Query: 154 TPVAKTRPASSRPVKPGN-TTPARGPTPSKGNVKG------AIGSGSRSDASGLGHKYLD 213
AK ++P + N P RGPTP N AI S SRSD S +
Sbjct: 165 IGGAKPSSPRTQPQRLRNGVEPPRGPTPISKNTTPKPKPAIAIASASRSD-SPAANSSPS 224
Query: 214 SRNGSSGGSGHRVDGDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSLDDKDLANLVLHAN 273
S++ S GS D +P YS G Y DP + L +LS+D KDLA+++LHAN
Sbjct: 225 SKHLPSPGSAQHHDMKNHSP---YSGG-TYTPLADPQLNNHLQRLSIDGKDLASIILHAN 284
Query: 274 SIYESFNSDTKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATY 333
SIYES SDT EE S QSN RI QI+K+I+SHRQ NSS+TSY TKL LWDEL TY
Sbjct: 285 SIYESIGSDTMEE--SFQSN--APRIFQIYKDIASHRQENSSVTSYFTKLKILWDELETY 344
Query: 334 I-DVPQ-CSCGSIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVII 393
DVPQ CSCG++EK S ++REKVMQF++GL++SYST C +IL ++PFPT+EKA S+II
Sbjct: 345 SDDVPQCCSCGAMEKLSGHVEREKVMQFLMGLNNSYSTICPQILLIQPFPTMEKAYSIII 404
Query: 394 REEKRREVVQSLENFAEKVIQNNWLVNGNFNNVDNNDGIKEQ----QIDHNEVACIPVEP 450
REEKR E+V SLE A KV++N WL+ + ++ +DGI E+ D+ E+ P E
Sbjct: 405 REEKRMELVTSLEMVAAKVMENKWLLQNDQSSNGYDDGIHEEVNGNTEDNVEIPSFPNES 453
BLAST of Sed0008984 vs. ExPASy TrEMBL
Match:
A0A6J1C7L7 (uncharacterized protein LOC111008986 OS=Momordica charantia OX=3673 GN=LOC111008986 PE=4 SV=1)
HSP 1 Score: 188.0 bits (476), Expect = 8.8e-44
Identity = 149/350 (42.57%), Postives = 191/350 (54.57%), Query Frame = 0
Query: 39 RGIISPPRSRSSPRENRPFNNNNNATANPPSRPNYMSPCRRPATATPASDPRNPRKETQP 98
RG+ISPP+SR S E+ ++ NNA ANPPS PNYMS RR A + + T+P
Sbjct: 7 RGLISPPKSRFSVTES---DSQNNAAANPPSMPNYMSATRRSTAARVVNPKQQQTTHTKP 66
Query: 99 ATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPP-APNPHDKKLDANSNKTPVAKT 158
G S+ T S P + +PSRR P APN + D ++ K +AK
Sbjct: 67 TFG----------SNAIRATKNSSPKPTPVVPSRRRPTWAPNNPNGHNDNSTTKLTIAKI 126
Query: 159 RPASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRSDASGLGHKYLDSRNGSSGGSGHRV 218
+ + V P RGPT + +GSS GSGH
Sbjct: 127 TTSRNSNVNGVQQQP-RGPT------------------------LISVASGSSHGSGHHQ 186
Query: 219 DGDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSLDDKDLANLVLHANSIYESFNSDTKEE 278
D + N D P V +L QLS+D K A +V ANS+ ES TKEE
Sbjct: 187 DANNNNIEGEEEDS--TTVIGHPHVINQLQQLSIDGKHHAKMVFRANSMDESVGPYTKEE 246
Query: 279 QCSSQSNNIGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCGSI-- 338
CS QSN RIL+I+K+I+SHRQGNSSITSY TKL LW+EL TY D+PQC S
Sbjct: 247 -CSPQSN--AERILEIYKDIASHRQGNSSITSYFTKLETLWEELETYSDLPQCCSYSATD 306
Query: 339 EKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFPTVEKACSVIIREE 386
+K S+ ++REKVMQF+VGL+DSYST C++IL ++PFPTVEKA S+II +E
Sbjct: 307 QKPSKLVEREKVMQFLVGLNDSYSTICSQILLIRPFPTVEKAYSIIIMQE 313
BLAST of Sed0008984 vs. ExPASy TrEMBL
Match:
A0A6J1C6T8 (uncharacterized protein LOC111008934 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008934 PE=4 SV=1)
HSP 1 Score: 158.7 bits (400), Expect = 5.7e-35
Identity = 150/380 (39.47%), Postives = 190/380 (50.00%), Query Frame = 0
Query: 39 RGIISPPRSRSSPRENRPFNNNNNATANPPSRPNY-MSPCRRPATATPASDPRNPRKETQ 98
RG+ISPPR+ S P NNA ANPP RPNY MSP RP T S+ +
Sbjct: 4 RGLISPPRAFSGP---------NNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLK 63
Query: 99 PATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNP-----HDKKLDANSNKT 158
+ SS A R P PNP H KKLD N+N
Sbjct: 64 ATS-----------SSNAIRATHIAP--------------PNPYDLQNHQKKLDHNNNNN 123
Query: 159 PVAKTR---PASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRS---DASGLGHKYLDSR 218
KT P + ++ G T + P KG SGSRS DA+ + K+ DS
Sbjct: 124 SSTKTTAPPPTRHQRLRNGATLISNNTAP---RPKGPTASGSRSDPLDANLIAPKFSDSP 183
Query: 219 NGSS------GGSGHRVD-GDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSL-----DDK 278
N SS GSG R + +VGN + G Y + P + LH+LS +D
Sbjct: 184 NNSSPNHLSIHGSGQRQNISNVGN-----NGGTAYTSLAHPQLNNHLHKLSRGGSGGNDG 243
Query: 279 DLA-------NLVLHANSIYESFNSDTKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSI 338
+ ++VLH+ +CSSQSN RI +I+K+I+SHRQGNSSI
Sbjct: 244 KIPIYGGQDDHIVLHS--------------KCSSQSN--VPRIFEIYKDIASHRQGNSSI 303
Query: 339 TSYITKLNKLWDELATYIDVPQCSCGSIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILD 388
TSY T+L LWDEL TY D+ QC S E ++REKVMQF+VGL+D YST C +IL
Sbjct: 304 TSYFTRLKTLWDELETYNDLSQCC-----SSGEHVEREKVMQFLVGLNDPYSTICHQILL 320
BLAST of Sed0008984 vs. ExPASy TrEMBL
Match:
A0A6J1C6U3 (uncharacterized protein LOC111008934 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008934 PE=4 SV=1)
HSP 1 Score: 157.9 bits (398), Expect = 9.8e-35
Identity = 148/375 (39.47%), Postives = 187/375 (49.87%), Query Frame = 0
Query: 39 RGIISPPRSRSSPRENRPFNNNNNATANPPSRPNY-MSPCRRPATATPASDPRNPRKETQ 98
RG+ISPPR+ S P NNA ANPP RPNY MSP RP T S+ +
Sbjct: 4 RGLISPPRAFSGP---------NNAAANPPMRPNYRMSPPPRPTTVVNPSEQMFYEHWLK 63
Query: 99 PATGPRPSRTNPDRSSTAPRTDPSKPISSKPLPSRRTPPAPNP-----HDKKLDANSNKT 158
+ SS A R P PNP H KKLD N+N
Sbjct: 64 ATS-----------SSNAIRATHIAP--------------PNPYDLQNHQKKLDHNNNNN 123
Query: 159 PVAKTR---PASSRPVKPGNTTPARGPTPSKGNVKGAIGSGSRS---DASGLGHKYLDSR 218
KT P + ++ G T + P KG SGSRS DA+ + K+ DS
Sbjct: 124 SSTKTTAPPPTRHQRLRNGATLISNNTAP---RPKGPTASGSRSDPLDANLIAPKFSDSP 183
Query: 219 NGSS------GGSGHRVD-GDVGNPNRCYSDGHYYGAFRDPAVRAKLHQLSL----DDKD 278
N SS GSG R + +VGN + G Y + P + LH+LS +
Sbjct: 184 NNSSPNHLSIHGSGQRQNISNVGN-----NGGTAYTSLAHPQLNNHLHKLSRGGSGGNDA 243
Query: 279 LANLVLHANSIYESFNSD---TKEEQCSSQSNNIGTRILQIFKEISSHRQGNSSITSYIT 338
+ ++ I D +CSSQSN RI +I+K+I+SHRQGNSSITSY T
Sbjct: 244 YPEIPIYVGKIPIYGGQDDHIVLHSKCSSQSN--VPRIFEIYKDIASHRQGNSSITSYFT 303
Query: 339 KLNKLWDELATYIDVPQCSCGSIEKSSEQIQREKVMQFVVGLDDSYSTFCAKILDMKPFP 388
+L LWDEL TY D+ QC S E ++REKVMQF+VGL+D YST C +IL ++PFP
Sbjct: 304 RLKTLWDELETYNDLSQCC-----SSGEHVEREKVMQFLVGLNDPYSTICHQILLIRPFP 329
BLAST of Sed0008984 vs. TAIR 10
Match:
AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 62.8 bits (151), Expect = 8.2e-10
Identity = 29/103 (28.16%), Postives = 60/103 (58.25%), Query Frame = 0
Query: 286 IGTRILQIFKEISSHRQGNSSITSYITKLNKLWDELATYIDVPQCSCGS-----IEKSSE 345
+ +I Q+ + +++ RQG S+ Y KL+K+W EL+ Y +P+C CG +++ E
Sbjct: 123 VDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEE 182
Query: 346 QIQREKVMQFVVG--LDDSYSTFCAKILDMKPFPTVEKACSVI 382
++E+ +F++G L+ + KI+ KP P++ +A +++
Sbjct: 183 AREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMV 225
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_023542694.1 | 8.6e-110 | 60.57 | uncharacterized protein LOC111802521 [Cucurbita pepo subsp. pepo] | [more] |
XP_022954810.1 | 3.6e-108 | 60.81 | serine/arginine repetitive matrix protein 1-like [Cucurbita moschata] | [more] |
KAG6573173.1 | 6.2e-108 | 60.33 | hypothetical protein SDJN03_27060, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7012356.1 | 3.1e-107 | 59.86 | hypothetical protein SDJN02_25108, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022137024.1 | 5.4e-72 | 48.49 | uncharacterized protein LOC111008588 [Momordica charantia] >XP_022137025.1 uncha... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GTG4 | 1.7e-108 | 60.81 | serine/arginine repetitive matrix protein 1-like OS=Cucurbita moschata OX=3662 G... | [more] |
A0A6J1C5Z8 | 2.6e-72 | 48.49 | uncharacterized protein LOC111008588 OS=Momordica charantia OX=3673 GN=LOC111008... | [more] |
A0A6J1C7L7 | 8.8e-44 | 42.57 | uncharacterized protein LOC111008986 OS=Momordica charantia OX=3673 GN=LOC111008... | [more] |
A0A6J1C6T8 | 5.7e-35 | 39.47 | uncharacterized protein LOC111008934 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
A0A6J1C6U3 | 9.8e-35 | 39.47 | uncharacterized protein LOC111008934 isoform X1 OS=Momordica charantia OX=3673 G... | [more] |
Match Name | E-value | Identity | Description | |
AT1G21280.1 | 8.2e-10 | 28.16 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha... | [more] |