Sed0008944 (gene) Chayote v1

Overview


Name	Sed0008944
Type	gene
Organism	Sechium edule (Chayote v1)
Description	prostatic spermine-binding protein-like
Location	LG11: 1378193 .. 1382608 (-)
RNA-Seq Expression	Sed0008944
Synteny	Sed0008944

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCGACGGTGTCATCTTCGTCGAGAGAACCATGTGGGTTCGCTCTGTTCTGGAAGCTATGGCGGTGGAGACTGTTCTTGTCACTGCTAACTCCCTCGCTTGTCTTCTGGCGGCGGTAAACCCTCATTTGACCTTAAATCTCTAATGGGGATTTGTTCTTTTCACGAATTTTGCTGATTTTAGTCGTTGTGAAGCCTTAATTTCTTTGCTCTATGTGTTTTTCTCTGACTTGTTTTTTTGTTCTTGTGTTGTTTGCTGGTCTTGATCTTTTGCTTTGTTAGTTATGATAACTTTACTCTCACGCGTTTGTTTTCTTTTCTGATTGTGGTAACCTGGTCTCGATTGTTTAGCTGAAAATGTTGGATATTGACCTCTGTGTTGAAGTGAAGTGTTTGTTGTAGTCTAGCAGGGGATGTAAATGTGGATGGAAGGGGAGTTGTTTCTTGGGTTTTGTGGAAGTTTCCTCTTATTGTGACAATGAACAAGCCAACTTTTTCAGGATTTTGCTATTCTGTAGTGTATTTAGATTTGGCTGGATATTTTGTGTGCAAATCCTTTTGCTTTCTGCCTCATCTTTGTTGAATTTTGTAAATCGTGCTGTTTTAAGGGATAGTGTGTTAGTAACTTAGAAATGAGCATTTGTTTGTAAGGGGTTTTGAAGGTATGCTCCCCTCAAGGTTCCAAGTTCGAGACTCAGTGACCTTAACTTATAGGCACTTCCCGCGTCTCCGTTCCTTCGATGTCTCCCAATACCTGGCCTAGGGACAGCGTGGTTTAGCGAGTAAAGTGGAGTGAAGTTGCAATTTCCTTGTTTCCAGAAAAAAAAAACATAGACGTAGTCATTTGTAGTTTTTGGATGTTGCATATGGTCTATGTTGATGGGCTGGAAACAGAATGCCTCTGCTGCTGTGTTGATCTGTCAATTTTGCCCCTGGGCTTGTTTTCTTGATATTTAATAATTTTCAGTTTGTATGATTTTTGTTCATCAAGTTTTAGCTATCCTTTGCACTTGGTGGTTGTTGGAAGTTAACTTTCACTAATCTACTCATGCTTTCTAGTTTCCCTTTTTGGTAATTTGTGCCTTGATCTGGCTATAGTATTTCCCTTTTTGGTACTTGGAATCAAGATTTTCAAAATGCAGTTACTTTGGTACTTCAAAGTTCATCTTGTCCTAGCATCTCATTAGGTAGACTGATTGGCTACGACAACCTATCACCTTGAGAATCTAAAAGGTTATGAGATCAATCTATGGTGAAGTGACTAGCCACTTAGGAATTAATTTTTTGATACTCGTAGCCATAGGGCCAGATGGCCTATATCGTGAGAATAGTCGAGGTGTGTATAACCTGATCTAGACACTCATCACTATAACAAAAAATAATAAAATTGACTGATTGGTTACAGTACAGGAAGGGAGTGCATATTCTCGCAATTTTTCCCTATATGTTTCCATTCCTAAATTTCAAGTTATTTGCATTTTTATTTTGTTCCAAAATTTTGGGGAGTTTTTATTGAAAAGTGTTTTCTGATTGGCTGACGTGCGGAACTATATCTGGAAGTTTTCATATTTTCTTTCTGATTCTTTGCCTCAATTTTGTTTTTTTGTTTTGGTAATTTATCATTTAGGGGTGTCTGATTTTTTGTTTTGTGAGGAGTTACAAATGAATATTTACAACTCCTCAAAAAACTACGTCCAAATAAGTTAGTGCAACCACCCAAAATGACTATTTATTTATAATCACTCAAAATAACTCTTCATTTCAAAGCTATTCATTTCTAACCATTCATTTTTGCAACCTCTCTCGAAAATTCAGATTCAACTCCTCTACAAAAATTCACATGTAAACGAGCTTTTACCGGCAACTCTTTTATAAAAATTCACATCCAAACAAGTTATTACTATAGTCCTAGTTTCTAATCGCTCAAAATAATTTCTCATGCAACTACTCATCCAATTTACCAATCTTGTTGTGAACAATTGTGATTGCAATAACAGTTTTCTCGAGACTTCAATTCAACTTTCAATATAATTCAGTTTTCTTTTCAGGCAGGAGCTCTGTTAAATGATGCCAATGCTCTTCCAGGTTTGGCTGCAGTTGAGGAAAGGTAGTAAAATTTCATGTCATTGATGTGTTTTCACTTAATGTTTTTTGGTTGGTTCTGAGATTACTGGCTTCCTCTCCTCTTCTAGGTTCCCTTTTGCTGAACTTCACCAAAAGAAAAGCCCTGATGAGGAAAACAAAGATGGCAGTGAAACAGAGGATGATGATGAAGATGATGATGATGATGCAAATGATCAGGACGACGACGATGACGATGAAGATTTCTCAGGAGGTGAGGATGGTGAGGACAGTGATCCAGAGGATGAGCTTGCTAATGGCGGCAGTGGAGGTGGAGATGACGACAACGGAGATGAAGATGACGATAATGACGATGATCATGACGATGAGGAAGATGAGGATGAAGATGATGACGATGAAGATGACGAGGAGGAAACGCCTCAGCCACCCGCCAAAAAGAGGAAGTGAGAGAATGTCGATTGGGCCCTCCCCATTGTCGAGTTTCAAGTTTGGAGTAGTGAGGGGGAGTTTAGCTAGTGTTAGTCTTTGCTTTAGTGGTAGGAACATTGTTGGCCTTGTTGGTAATGAACTTCTCATCTTATGTTATGATGATTTGGATCCATATTACATATAACATTTTCTTTTGCTAAAATAGTTGGTAAATTTAGACTGTCATCTGAGGTTAGAGGATAAACAGGTTCAACTGATGTGGGAATCATCAAATCGATTTTTAAAAATTGAGTCAATAATCAGGTTATTACGTTCGAGTTCAAGATTTAAGGGTATATTTGGACCCATGGCTGAGTTACTATTAAGTATTAATGTAGGGTTATTATTGTGGTAGGTTATTATAAATAAGGTGTGTTTCATATGTAGATTATTATAAGGGTTTAATTATAAATTTGGTTCTTACGTTGGGATTAAAGTTAGAGTTTAGATCTTATCTCATGATTTTAAAAACTAAATTTTAGTTTATATGTTTTGAAAAAACGATGAATTTAGTATTTATGATTTTGAAAACTAGAATTTAGTTTCTCTATTTTGATAAACTTAAAATATAGGTTTTGTTGTTTGTTATTGCAAGTGAATTAAATGTGGAAACTCACTATCATGTCATGAATTTTTTGTCCAATTAGTCACTACTCTAAATTTTCATCATACATATTAATAACCAACTTCTAATTACTTATTCGCTAATAATGGGATGACATTGACTATTTTTCATATTTTTCAAAATATAAGATTAAATTCTAGTTTTTAGAACCATAAAGACTAAATTTTAATTTTTTTTCAAATCATATGGATTAAACTCTAATTTTTTAAATCATGTAAGTTAAACTCTAACTTTTTTTTAAATTATAGGGACTAAACTTATATCCTTATCATAATAAGTTTTGACAACCTCTCCTAGAGGTGCACATTATTATAACATGAGATTATTATAGCATAAAACTTTATTACACGAAGTTATTATAATATGATTGGAGAGTTATTATAATTAGGATGAGTGGTTATGAAACTTACACACCAATTATTATTTAATTGATGTTCTAAATACACGAACCTAATCTACCATTAAATAGAGGTTCAAATGCCCTCTAGTTTTCTGAGTTATTTTGACCACCAAATATTGTAGGTTAGATGGTTGTTTTATGAGAATGACGAAGTATTCGTAAGTTGACTTCAATATTCACGTTGACAATTGAGTTCTTAAAAATTCAGATCAAACTCATCAAATGAGTCTAATCAAGATGATTGAAAATAACTTGTTTGTAAACTTTACAAGAAAAGTTTTATTGATGAACATCTTAATAGAACTGCCCCTTCCCATATTAAAAATGAGAATGATATGTGAAATAAACATTAGTTTTGGTTTGTGTTTTGGACAGTTTAACATTTTGGTCTTCATCTATGCATTTTAGTTGAATAAAAAATTTGGTTAAAGTTTTAAATTTGTTCTTTTATTATCTTATAAGATATACAGATTTATTTATTTGTTGATAATTGAAAATCAGAGCTTACCCACACCTATTCTAGATTCGGATTTTGAAGGTAAAACAAATTCTTTTACGATTAAACTCATTCATAGAATTTGAATCTCCAACTTTCAAAGAGAGACTATAAAAGTTAAAAGTGTCTTAAGATAATCATATGTTATTTTATTAGTTAATTAGTCAAAAACATAGAAGCTTGATATTCAAACTTTTGACCAACTTGAATTAGAATATATACTTTAACGTTTAGACTAAGATGAAATTCTAAGTTAGGTCTTGGTTGAGAAAGAGAATAAAACTTATTTGATTTTTCTTTTCAAAAACAAATATTTAAAAAAGTTCAAAGGAAAACCCTAG

mRNA sequence

ATGGAGTTCGACGGTGTCATCTTCGTCGAGAGAACCATGTGGGTTCGCTCTGTTCTGGAAGCTATGGCGGTGGAGACTGTTCTTGTCACTGCTAACTCCCTCGCTTGTCTTCTGGCGGCGGCAGGAGCTCTGTTAAATGATGCCAATGCTCTTCCAGGTTTGGCTGCACTAGTGTTAGTCTTTGCTTTAGTGGTAGGAACATTGTTGGCCTTGTTGAATAAAACTTATTTGATTTTTCTTTTCAAAAACAAATATTTAAAAAAGTTCAAAGGAAAACCCTAG

Coding sequence (CDS)

ATGGAGTTCGACGGTGTCATCTTCGTCGAGAGAACCATGTGGGTTCGCTCTGTTCTGGAAGCTATGGCGGTGGAGACTGTTCTTGTCACTGCTAACTCCCTCGCTTGTCTTCTGGCGGCGGCAGGAGCTCTGTTAAATGATGCCAATGCTCTTCCAGGTTTGGCTGCACTAGTGTTAGTCTTTGCTTTAGTGGTAGGAACATTGTTGGCCTTGTTGAATAAAACTTATTTGATTTTTCTTTTCAAAAACAAATATTTAAAAAAGTTCAAAGGAAAACCCTAG

Protein sequence

MEFDGVIFVERTMWVRSVLEAMAVETVLVTANSLACLLAAAGALLNDANALPGLAALVLVFALVVGTLLALLNKTYLIFLFKNKYLKKFKGKP

Homology

[Close]

BLAST of Sed0008944 vs. NCBI nr
Match: XP_022965978.1 (prostatic spermine-binding protein-like [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MEFDGVIFVERTMWVRSVLEAMAVETVLVTANSLACLLAAAGALLNDANALPGLAALVLV 60
          ME  GV FV+RTMWVRSVLEA+AVETV  TANSLACLLAAAGALLNDANALPG AA+  +
Sbjct: 1  MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGFAAIEEM 60

Query: 61 F 62
          F
Sbjct: 61 F 61

[Close]

BLAST of Sed0008944 vs. NCBI nr
Match: XP_022938180.1 (prostatic spermine-binding protein-like [Cucurbita moschata])

HSP 1 Score: 85.9 bits (211), Expect = 2.0e-13
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MEFDGVIFVERTMWVRSVLEAMAVETVLVTANSLACLLAAAGALLNDANALPGLAALVLV 60
          ME  GV FV+RTMWVRSVLEA+AVETV  TANSLACLLAAAGALLNDANALPG AA+  +
Sbjct: 1  MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGFAAIEEM 60

Query: 61 F 62
          F
Sbjct: 61 F 61

[Close]

BLAST of Sed0008944 vs. NCBI nr
Match: XP_023522765.1 (prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-13
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MEFDGVIFVERTMWVRSVLEAMAVETVLVTANSLACLLAAAGALLNDANALPGLAALVLV 60
          ME  GV FV+RTMWVRSVLEA+AVETV  TANSLACLLAAAGALLNDANALPG AA+  +
Sbjct: 1  MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGCAAIEEM 60

Query: 61 F 62
          F
Sbjct: 61 F 61

[Close]

BLAST of Sed0008944 vs. NCBI nr
Match: XP_038891026.1 (prostatic spermine-binding protein-like [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-12
Identity = 47/57 (82.46%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MEFDGVIFVERTMWVRSVLEAMAVETVLVTANSLACLLAAAGALLNDANALPGLAAL 58
          ME DGV  VERTMWVRSVLEAMAVET L TANS ACLLAAAGA+LN ANA PGLAA+
Sbjct: 1  MELDGVGLVERTMWVRSVLEAMAVETALATANSFACLLAAAGAMLNVANATPGLAAI 57

[Close]

BLAST of Sed0008944 vs. NCBI nr
Match: KAG7021218.1 (hypothetical protein SDJN02_17906, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-12
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MEFDGVIFVERTMWVRSVLEAMAVETVLVTANSLACLLAAAGALLNDANALPGLAALVLV 60
          ME  GV FV+RTMWVRSVLEA+AVETV  TA+SLACLLAA GALLNDANALPG AA+  +
Sbjct: 1  MELGGVGFVDRTMWVRSVLEAIAVETVFTTASSLACLLAATGALLNDANALPGFAAIEEM 60

Query: 61 F 62
          F
Sbjct: 61 F 61

[Close]

BLAST of Sed0008944 vs. ExPASy TrEMBL
Match: A0A6J1HQJ4 (prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111465698 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.8e-14
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MEFDGVIFVERTMWVRSVLEAMAVETVLVTANSLACLLAAAGALLNDANALPGLAALVLV 60
          ME  GV FV+RTMWVRSVLEA+AVETV  TANSLACLLAAAGALLNDANALPG AA+  +
Sbjct: 1  MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGFAAIEEM 60

Query: 61 F 62
          F
Sbjct: 61 F 61

[Close]

BLAST of Sed0008944 vs. ExPASy TrEMBL
Match: A0A6J1FIZ1 (prostatic spermine-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC111444342 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.8e-14
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1  MEFDGVIFVERTMWVRSVLEAMAVETVLVTANSLACLLAAAGALLNDANALPGLAALVLV 60
          ME  GV FV+RTMWVRSVLEA+AVETV  TANSLACLLAAAGALLNDANALPG AA+  +
Sbjct: 1  MELGGVGFVDRTMWVRSVLEAIAVETVFTTANSLACLLAAAGALLNDANALPGFAAIEEM 60

Query: 61 F 62
          F
Sbjct: 61 F 61

[Close]

BLAST of Sed0008944 vs. ExPASy TrEMBL
Match: A0A6J1KGN6 (prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111493719 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MEFDGVIFVERTMWVRSVLEAMAVETVLVTANSLACLLAAAGALLNDANALPGLAAL 58
          ME +GV F+ERTMWV SVLEAM +ETV VTANSLACLLAA GALLN+ANA PGLAA+
Sbjct: 1  MELEGVGFMERTMWVSSVLEAMVMETVFVTANSLACLLAATGALLNNANATPGLAAI 57

[Close]

BLAST of Sed0008944 vs. ExPASy TrEMBL
Match: A0A6J1G306 (mitotic apparatus protein p62-like OS=Cucurbita moschata OX=3662 GN=LOC111450321 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MEFDGVIFVERTMWVRSVLEAMAVETVLVTANSLACLLAAAGALLNDANALPGLAAL 58
          ME +GV F+ERTMWV SVLEAM +ETV VTANSLACLLAA GALLN+ANA PGLAA+
Sbjct: 1  MELEGVGFMERTMWVSSVLEAMVMETVFVTANSLACLLAATGALLNNANATPGLAAI 57

[Close]

BLAST of Sed0008944 vs. ExPASy TrEMBL
Match: A0A5A7V8I6 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00520 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.2e-12
Identity = 45/57 (78.95%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MEFDGVIFVERTMWVRSVLEAMAVETVLVTANSLACLLAAAGALLNDANALPGLAAL 58
          ME D V FVERTMW RSVLEAMAVETV  TANSLACLLA AGA+LN AN  PGLAA+
Sbjct: 1  MELDCVSFVERTMWERSVLEAMAVETVFTTANSLACLLAVAGAMLNIANGTPGLAAI 57

The following BLAST results are available for this feature:

BLAST of Sed0008944 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965978.1	2.0e-13	80.33	prostatic spermine-binding protein-like [Cucurbita maxima]	[more]
XP_022938180.1	2.0e-13	80.33	prostatic spermine-binding protein-like [Cucurbita moschata]	[more]
XP_023522765.1	2.6e-13	80.33	prostatic spermine-binding protein-like [Cucurbita pepo subsp. pepo]	[more]
XP_038891026.1	1.0e-12	82.46	prostatic spermine-binding protein-like [Benincasa hispida]	[more]
KAG7021218.1	2.2e-12	77.05	hypothetical protein SDJN02_17906, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0008944 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0008944 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQJ4	9.8e-14	80.33	prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111465...	[more]
A0A6J1FIZ1	9.8e-14	80.33	prostatic spermine-binding protein-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KGN6	1.4e-12	78.95	prostatic spermine-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111493...	[more]
A0A6J1G306	1.4e-12	78.95	mitotic apparatus protein p62-like OS=Cucurbita moschata OX=3662 GN=LOC111450321...	[more]
A0A5A7V8I6	9.2e-12	78.95	Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var....	[more]

BLAST of Sed0008944 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008944.1	Sed0008944.1	mRNA