Sed0008882 (gene) Chayote v1

Overview


Name	Sed0008882
Type	gene
Organism	Sechium edule (Chayote v1)
Description	LisH and RanBPM domains containing protein
Location	LG06: 6496399 .. 6497860 (-)
RNA-Seq Expression	Sed0008882
Synteny	Sed0008882

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAAAATACGGGTTCTCTTTTCAAATTAGTTGAAGTATCGCCCATCCGCAGCCTAGCTTAAACCCTTAACTTTTCGCGATCCAGAACAAAAAATGAATTCCGATTCGAGTTCTGGTTCCGATTCCAGTTCTCACAGTGTTGTCATGGACGATCCTCCTCCTCTTCGAGTCCCACTGTAAGTTTTCGATACTTCAGAATTAGGGTTTATATTCCTGTTCGGATTCCTGTTAGAATACCCTAAAACCACGTAGGGGGTGTTTGTTTGACATATTTAAGTAGGATTTAGCTTTAGTAGTTATATTGGGGAATTATTTTGAGTAGTTAAAAATTGAGAGTTATAGCCAAAAACTTGTTTGGGACGTGGTTTGTGTGTAGAGGAGTTAGAGTGAAAACTTTGTTTGGATGTAGATTTAAAATGAGTAGTTATTTTGAGTAGTTAAAAAATGAATGATTAAAAATGAGTTATCTTGATTGAGTTCTGGTTCTGGTTCCAGTGGTCACACTGTTTCATGGACGATCCTCCTCTTCGAGTCCCACCGTAAGTTTTCGATAGTTCAAAATTAGGGTTTATATTCCTGTTCAAATTCCTTTTAGAATACCCTGCTTTAGGACGTATTCTTAGAACAATCCTGGTTAGAGATAATGCAAACACGATAGAGCAACAAAAGGTAAAATTCCATCCCAAACAGAACCAAGGAAATGTACAAGGACTTCCCATGTTTATTTCTCTGCTAATGATGAAATTTTAGCTGTTTGTCTAATCCCTTTCCACATTTTCATTTTCAGGTTTCCATCATCAGATGAGGAGGAAACCAATGATAATGCTGATAGTAGTGATGAGGACAGATTCAAAAATTGTATCCCAGGAGATGAATGGGAGAAAAAGCTGAACAATATTGTGATCAACAAGGAAGACATCGACACTTTGGTGATGGATTTCTTGATTTCAGAAGATTTGGTTGAAGCCGCCTCTGCATTTGGACAAGAATCTGTCTCTAAGGGCCAAATGACAGCCCCTGAAGTTAATCAAGGAAAAGGTAAAAACCTTATTTATTTATCTTTTTCATTTGAAGAAACTAAGATTTGACATAACAACTATTGTCTATTGTTTTGCAGATTTAACTCTACCTCATTGCTTGAAGATGCTGGCATGGGAGGAAGAGAAACTCGAGGAAAAGACCACATATCCTCAGTTAAGCAACAATTTGCTAGGCTTCGAAGAAGGGTAAAAATAGGACAATAGTTTGGCATGTAAGTCAGATATCTTCATAAAATGACATAAGAAACGACGTAAACTGCCGGTCAATTTCTTTTCTTGCATTCATATACGAACTTAACATCATTCAATTGTATTGAATGTGTTCTTGATGTTTTTTTACCTATGTTGGTTGACAACTTGATGTTTGTGGAAATGGAACCACTTTGAATATGGTTAGTTTAGAAAAAGTTGTTTCTCGGGG

mRNA sequence

GAGAAAAATACGGGTTCTCTTTTCAAATTAGTTGAAGTATCGCCCATCCGCAGCCTAGCTTAAACCCTTAACTTTTCGCGATCCAGAACAAAAAATGAATTCCGATTCGAGTTCTGGTTCCGATTCCAGTTCTCACAGTGTTGTCATGGACGATCCTCCTCCTCTTCGAGTCCCACTGTTTCCATCATCAGATGAGGAGGAAACCAATGATAATGCTGATAGTAGTGATGAGGACAGATTCAAAAATTGTATCCCAGGAGATGAATGGGAGAAAAAGCTGAACAATATTGTGATCAACAAGGAAGACATCGACACTTTGGTGATGGATTTCTTGATTTCAGAAGATTTGGTTGAAGCCGCCTCTGCATTTGGACAAGAATCTGTCTCTAAGGGCCAAATGACAGCCCCTGAAGTTAATCAAGGAAAAGATTTAACTCTACCTCATTGCTTGAAGATGCTGGCATGGGAGGAAGAGAAACTCGAGGAAAAGACCACATATCCTCAGTTAAGCAACAATTTGCTAGGCTTCGAAGAAGGGTAAAAATAGGACAATAGTTTGGCATGTAAGTCAGATATCTTCATAAAATGACATAAGAAACGACGTAAACTGCCGGTCAATTTCTTTTCTTGCATTCATATACGAACTTAACATCATTCAATTGTATTGAATGTGTTCTTGATGTTTTTTTACCTATGTTGGTTGACAACTTGATGTTTGTGGAAATGGAACCACTTTGAATATGGTTAGTTTAGAAAAAGTTGTTTCTCGGGG

Coding sequence (CDS)

ATGAATTCCGATTCGAGTTCTGGTTCCGATTCCAGTTCTCACAGTGTTGTCATGGACGATCCTCCTCCTCTTCGAGTCCCACTGTTTCCATCATCAGATGAGGAGGAAACCAATGATAATGCTGATAGTAGTGATGAGGACAGATTCAAAAATTGTATCCCAGGAGATGAATGGGAGAAAAAGCTGAACAATATTGTGATCAACAAGGAAGACATCGACACTTTGGTGATGGATTTCTTGATTTCAGAAGATTTGGTTGAAGCCGCCTCTGCATTTGGACAAGAATCTGTCTCTAAGGGCCAAATGACAGCCCCTGAAGTTAATCAAGGAAAAGATTTAACTCTACCTCATTGCTTGAAGATGCTGGCATGGGAGGAAGAGAAACTCGAGGAAAAGACCACATATCCTCAGTTAAGCAACAATTTGCTAGGCTTCGAAGAAGGGTAA

Protein sequence

MNSDSSSGSDSSSHSVVMDDPPPLRVPLFPSSDEEETNDNADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQMTAPEVNQGKDLTLPHCLKMLAWEEEKLEEKTTYPQLSNNLLGFEEG

Homology

[Close]

BLAST of Sed0008882 vs. NCBI nr
Match: KAF3556377.1 (hypothetical protein F2Q69_00013549 [Brassica cretica])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 47/155 (30.32%), Postives = 64/155 (41.29%), Query Frame = 0


Query: 50  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM------- 109
           K  I  DEWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++       
Sbjct: 5   KKVITRDEWEKKLNAVKLRKEDMNTLVMNFLVTEGFVEAADKFQRESGTKPEIDLATITD 64

Query: 110 -------------------------------------------------TAPEVNQG--- 141
                                                            TA EVN     
Sbjct: 65  RMAVKKAVQNGNVEDAIEKVNDLNPEVHTSMLLSSCLIDYLLDISHRLKTASEVNAAILT 124

[Close]

BLAST of Sed0008882 vs. NCBI nr
Match: KAF7803515.1 (glucose-induced degradation protein 8-like protein [Senna tora])

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-06
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 50 KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQES 97
          K  I G+EWEKKLNN+ I KED++ LVM+FL++E LV+AA  FG ES
Sbjct: 21 KKMITGEEWEKKLNNVKIRKEDMNKLVMNFLVTEGLVDAAEKFGMES 67

[Close]

BLAST of Sed0008882 vs. NCBI nr
Match: KAF8093348.1 (hypothetical protein N665_0384s0034 [Sinapis alba])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 40  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSK 99
           N D  D    K  I  DEWEKKLN + + K+D++TLVM+FL++E  VEAA  F +ES +K
Sbjct: 9   NQDDEDMATSKKVITRDEWEKKLNAVKLRKQDMNTLVMNFLVTEGFVEAADKFQRESGTK 68

Query: 100 GQM 103
            ++
Sbjct: 69  PEI 71

[Close]

BLAST of Sed0008882 vs. NCBI nr
Match: KAF8093349.1 (hypothetical protein N665_0384s0034 [Sinapis alba])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 40  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSK 99
           N D  D    K  I  DEWEKKLN + + K+D++TLVM+FL++E  VEAA  F +ES +K
Sbjct: 9   NQDDEDMATSKKVITRDEWEKKLNAVKLRKQDMNTLVMNFLVTEGFVEAADKFQRESGTK 68

[Close]

BLAST of Sed0008882 vs. NCBI nr
Match: KAG2317196.1 (hypothetical protein Bca52824_020318 [Brassica carinata])

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-05
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 40  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSK 99
           N D  D    K  I  DEWEKKLN + + K+D++TLVM+FL++E  VEAA  F +ES +K
Sbjct: 9   NQDDEDMATSKKVITRDEWEKKLNAVKLRKQDMNTLVMNFLVTEGYVEAADKFQRESGTK 68

Query: 100 GQM 103
            ++
Sbjct: 69  PEI 71

[Close]

BLAST of Sed0008882 vs. ExPASy Swiss-Prot
Match: Q84WK5 (Protein GID8 homolog OS=Arabidopsis thaliana OX=3702 GN=GID8 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-07
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 28  LFPSSDEEETNDNADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVE 87
           +F +  EE+  D A S      K  I  +EWEKKLN + + KED++TLVM+FL++E  VE
Sbjct: 6   IFINQLEEDDEDMATS------KKMITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVE 65

Query: 88  AASAFGQESVSKGQM 103
           AA  F +ES +K ++
Sbjct: 66  AAEKFQRESGTKPEI 74

[Close]

BLAST of Sed0008882 vs. ExPASy TrEMBL
Match: A0A6J0JEW2 (glucose-induced degradation protein 8 homolog isoform X1 OS=Raphanus sativus OX=3726 GN=LOC108806039 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-05
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 40  NADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSK 99
           N D  D    K  I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K
Sbjct: 9   NQDDDDMATSKKVITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEAADKFQRESGTK 68

Query: 100 GQM 103
            ++
Sbjct: 69  PEI 71

[Close]

BLAST of Sed0008882 vs. ExPASy TrEMBL
Match: M4FBV8 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-05
Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 0


Query: 22  PPLRVPLFPSSDEEETNDNADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLI 81
           P L  PL P+     T+           K  I  DEWEKKLN + + KED++TLVM+FL+
Sbjct: 113 PSLLTPLTPNQSPLATS-----------KKVITRDEWEKKLNAVKLRKEDMNTLVMNFLV 172

Query: 82  SEDLVEAASAFGQESVSKGQM 103
           +E  VEAA  F +ES +K ++
Sbjct: 173 TEGFVEAADKFQRESGTKPEI 182

[Close]

BLAST of Sed0008882 vs. ExPASy TrEMBL
Match: A0A3P6CMT8 (Uncharacterized protein (Fragment) OS=Brassica oleracea OX=3712 GN=BOLC4T24250H PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-05
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 45  DEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM 103
           D+   K  I  DEWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Sbjct: 1   DQATSKKVITRDEWEKKLNAVKLRKEDMNTLVMNFLVTEGFVEAADKFQRESGTKPEI 58

[Close]

BLAST of Sed0008882 vs. ExPASy TrEMBL
Match: A0A0D3BVC8 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106337406 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 50  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM 103
           K  I  DEWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Sbjct: 5   KKVITRDEWEKKLNAVKLRKEDMNTLVMNFLVTEGFVEAADKFQRESGTKPEI 57

[Close]

BLAST of Sed0008882 vs. ExPASy TrEMBL
Match: A0A078GM96 (BnaA03g60080D protein OS=Brassica napus OX=3708 GN=BnaA03g60080D PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 50  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM 103
           K  I  DEWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Sbjct: 39  KKVITRDEWEKKLNAVKLRKEDMNTLVMNFLVTEGFVEAADKFQRESGTKPEI 91

[Close]

BLAST of Sed0008882 vs. TAIR 10
Match: AT1G61150.1 (LisH and RanBPM domains containing protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 28  LFPSSDEEETNDNADSSDEDRFKNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVE 87
           +F +  EE+  D A S      K  I  +EWEKKLN + + KED++TLVM+FL++E  VE
Sbjct: 6   IFINQLEEDDEDMATS------KKMITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVE 65

Query: 88  AASAFGQESVSKGQM 103
           AA  F +ES +K ++
Sbjct: 66  AAEKFQRESGTKPEI 74

[Close]

BLAST of Sed0008882 vs. TAIR 10
Match: AT1G61150.2 (LisH and RanBPM domains containing protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-08
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 50  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM 103
           K  I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Sbjct: 5   KKMITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEAAEKFQRESGTKPEI 57

[Close]

BLAST of Sed0008882 vs. TAIR 10
Match: AT1G61150.4 (LisH and RanBPM domains containing protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-08
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 50  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM 103
           K  I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Sbjct: 5   KKMITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEAAEKFQRESGTKPEI 57

[Close]

BLAST of Sed0008882 vs. TAIR 10
Match: AT1G61150.6 (LisH and RanBPM domains containing protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.3e-08
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 50  KNCIPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM 103
           K  I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Sbjct: 5   KKMITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEAAEKFQRESGTKPEI 57

[Close]

BLAST of Sed0008882 vs. TAIR 10
Match: AT1G61150.5 (LisH and RanBPM domains containing protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.4e-08
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 53  IPGDEWEKKLNNIVINKEDIDTLVMDFLISEDLVEAASAFGQESVSKGQM 103
           I  +EWEKKLN + + KED++TLVM+FL++E  VEAA  F +ES +K ++
Sbjct: 2   ITREEWEKKLNAVKLRKEDMNTLVMNFLVTEGYVEAAEKFQRESGTKPEI 51

The following BLAST results are available for this feature:

BLAST of Sed0008882 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3556377.1	1.3e-06	30.32	hypothetical protein F2Q69_00013549 [Brassica cretica]	[more]
KAF7803515.1	3.8e-06	61.70	glucose-induced degradation protein 8-like protein [Senna tora]	[more]
KAF8093348.1	4.2e-05	47.62	hypothetical protein N665_0384s0034 [Sinapis alba]	[more]
KAF8093349.1	4.2e-05	50.00	hypothetical protein N665_0384s0034 [Sinapis alba]	[more]
KAG2317196.1	5.5e-05	47.62	hypothetical protein Bca52824_020318 [Brassica carinata]	[more]

BLAST of Sed0008882 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WK5	2.7e-07	44.00	Protein GID8 homolog OS=Arabidopsis thaliana OX=3702 GN=GID8 PE=1 SV=1	[more]

BLAST of Sed0008882 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J0JEW2	3.5e-05	47.62	glucose-induced degradation protein 8 homolog isoform X1 OS=Raphanus sativus OX=...	[more]
M4FBV8	3.5e-05	41.98	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]
A0A3P6CMT8	3.5e-05	50.00	Uncharacterized protein (Fragment) OS=Brassica oleracea OX=3712 GN=BOLC4T24250H ...	[more]
A0A0D3BVC8	4.5e-05	52.83	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10633740...	[more]
A0A078GM96	4.5e-05	52.83	BnaA03g60080D protein OS=Brassica napus OX=3708 GN=BnaA03g60080D PE=4 SV=1	[more]

BLAST of Sed0008882 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61150.1	1.9e-08	44.00	LisH and RanBPM domains containing protein	[more]
AT1G61150.2	3.3e-08	50.94	LisH and RanBPM domains containing protein	[more]
AT1G61150.4	3.3e-08	50.94	LisH and RanBPM domains containing protein	[more]
AT1G61150.6	3.3e-08	50.94	LisH and RanBPM domains containing protein	[more]
AT1G61150.5	7.4e-08	52.00	LisH and RanBPM domains containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006594	LIS1 homology motif	PFAM	PF08513	LisH	coord: 70..96 e-value: 8.6E-7 score: 28.7
IPR006594	LIS1 homology motif	PROSITE	PS50896	LISH	coord: 68..100 score: 8.784116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	PANTHER	PTHR12864	RAN BINDING PROTEIN 9-RELATED	coord: 41..101
None	No IPR available	PANTHER	PTHR12864:SF60	BNAA03G60080D PROTEIN	coord: 41..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008882.1	Sed0008882.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding