Sed0008872 (gene) Chayote v1

Overview
NameSed0008872
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG03: 45765917 .. 45766470 (+)
RNA-Seq ExpressionSed0008872
SyntenySed0008872
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTCTGGGATGGATCTCCATGTCTGGAACAAGGTAGGATTTAATCACTTTCGTTGTACACTTTCTTACCTACTTTTTCTATGCAAAAATTGGGGCAAACATTTTCACAAACACTTGGTGTGCATAATTGTTCAAATGTTTTTTATCCATATCTGGAATTGATGTAAGCATTAAGATTGAATTTGATTTGGGGAATATTGGGTGGTGAAAGGGAAGATTTAGGGAAAGAAAATGGAACAGCAAAATTTTGTAAAATAACTCCATGTTGCCTTTGTTTATGCTTCATCAAATCCTCGATGTTTTGCAACAATCGAGTCTATTATTTTAAAGAGAAGAAAACGTACTTACTTGTGAATGAACAACAGGTTACTTCGTCGAGGATGGCGGCAACAAGATATCACCGTCGAGACTAAAGAATCAGCTCGAATTAATCGACAAAGGGTTGCTGTCGGCGGAGGCGGTGGTGGAACTGTTGGACTCCGACGACGACGGGTTGCTCTATGCCAACGATTTCGAGCGCCTGCTCAAGGTTGACGAGGAAGATCACTAG

mRNA sequence

ATGACTTTCTGGGATGGATCTCCATGTCTGGAACAAGGTTACTTCGTCGAGGATGGCGGCAACAAGATATCACCGTCGAGACTAAAGAATCAGCTCGAATTAATCGACAAAGGGTTGCTGTCGGCGGAGGCGGTGGTGGAACTGTTGGACTCCGACGACGACGGGTTGCTCTATGCCAACGATTTCGAGCGCCTGCTCAAGGTTGACGAGGAAGATCACTAG

Coding sequence (CDS)

ATGACTTTCTGGGATGGATCTCCATGTCTGGAACAAGGTTACTTCGTCGAGGATGGCGGCAACAAGATATCACCGTCGAGACTAAAGAATCAGCTCGAATTAATCGACAAAGGGTTGCTGTCGGCGGAGGCGGTGGTGGAACTGTTGGACTCCGACGACGACGGGTTGCTCTATGCCAACGATTTCGAGCGCCTGCTCAAGGTTGACGAGGAAGATCACTAG

Protein sequence

MTFWDGSPCLEQGYFVEDGGNKISPSRLKNQLELIDKGLLSAEAVVELLDSDDDGLLYANDFERLLKVDEEDH
Homology
[Close]
BLAST of Sed0008872 vs. NCBI nr
Match: XP_038879778.1 (putative calcium-binding protein CML19 [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 39/61 (63.93%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 14  YFVEDGGNKISPSRLKNQLELIDKGLL--SAEAVVELLDSDDDGLLYANDFERLLKVDEE 73
           YF EDG  KISPS L+N+L L+   LL   AEA VE LDSD DGLL A DFERLL+V EE
Sbjct: 46  YFDEDGDGKISPSELRNRLGLMGGELLQAEAEAAVESLDSDGDGLLCAGDFERLLEVGEE 105

[Close]
BLAST of Sed0008872 vs. NCBI nr
Match: XP_008464450.1 (PREDICTED: putative calcium-binding protein CML19 [Cucumis melo] >KAA0057778.1 putative calcium-binding protein CML19 [Cucumis melo var. makuwa] >TYJ98459.1 putative calcium-binding protein CML19 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 14 YFVEDGGNKISPSRLKNQLELIDKGLL--SAEAVVELLDSDDDGLLYANDFERLLKVDEE 73
          YF EDG  KISPS L+N+L LI   LL   AEA VE LDSD DGLL A D ERLL+V EE
Sbjct: 16 YFDEDGDGKISPSELRNRLGLIGGELLQAEAEAAVESLDSDGDGLLCAGDIERLLEVGEE 75

[Close]
BLAST of Sed0008872 vs. NCBI nr
Match: XP_022987451.1 (putative calcium-binding protein CML19 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 14 YFVEDGGNKISPSRLKNQLELIDKGLL--SAEAVVELLDSDDDGLLYANDFERLLKVDEE 73
          YF EDG  KISPS L+N++ L+   LL   AE  VE LDSD DGLL A DFERLL+V EE
Sbjct: 15 YFDEDGDGKISPSELRNRVGLMGGELLLGEAEMAVESLDSDGDGLLCAGDFERLLEVGEE 74

[Close]
BLAST of Sed0008872 vs. NCBI nr
Match: KAG6587417.1 (putative calcium-binding protein CML19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-07
Identity = 38/61 (62.30%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 14 YFVEDGGNKISPSRLKNQLELIDKGLL--SAEAVVELLDSDDDGLLYANDFERLLKVDEE 73
          YF EDG  KISPS L+N+L LI   LL   AEA VE LDSD DGLL   D ERLL V EE
Sbjct: 15 YFDEDGDGKISPSELRNRLGLIGGELLPEEAEAAVESLDSDGDGLLCVGDIERLLDVGEE 74

[Close]
BLAST of Sed0008872 vs. NCBI nr
Match: XP_023529455.1 (probable calcium-binding protein CML31 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-07
Identity = 38/61 (62.30%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 14 YFVEDGGNKISPSRLKNQLELIDKGLL--SAEAVVELLDSDDDGLLYANDFERLLKVDEE 73
          YF EDG  KISPS L+N+L LI   LL   AEA VE LDSD DGLL   D ERLL V EE
Sbjct: 15 YFDEDGDGKISPSELRNRLGLIGGELLPAEAEAAVESLDSDGDGLLCVGDIERLLDVGEE 74

[Close]
BLAST of Sed0008872 vs. ExPASy TrEMBL
Match: A0A5A7URJ2 (Putative calcium-binding protein CML19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00610 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-08
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 14 YFVEDGGNKISPSRLKNQLELIDKGLL--SAEAVVELLDSDDDGLLYANDFERLLKVDEE 73
          YF EDG  KISPS L+N+L LI   LL   AEA VE LDSD DGLL A D ERLL+V EE
Sbjct: 16 YFDEDGDGKISPSELRNRLGLIGGELLQAEAEAAVESLDSDGDGLLCAGDIERLLEVGEE 75

[Close]
BLAST of Sed0008872 vs. ExPASy TrEMBL
Match: A0A1S3CN12 (putative calcium-binding protein CML19 OS=Cucumis melo OX=3656 GN=LOC103502330 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-08
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 14 YFVEDGGNKISPSRLKNQLELIDKGLL--SAEAVVELLDSDDDGLLYANDFERLLKVDEE 73
          YF EDG  KISPS L+N+L LI   LL   AEA VE LDSD DGLL A D ERLL+V EE
Sbjct: 16 YFDEDGDGKISPSELRNRLGLIGGELLQAEAEAAVESLDSDGDGLLCAGDIERLLEVGEE 75

[Close]
BLAST of Sed0008872 vs. ExPASy TrEMBL
Match: A0A6J1JE84 (putative calcium-binding protein CML19 OS=Cucurbita maxima OX=3661 GN=LOC111484995 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-07
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 0 

Query: 14 YFVEDGGNKISPSRLKNQLELIDKGLL--SAEAVVELLDSDDDGLLYANDFERLLKVDEE 73
          YF EDG  KISPS L+N++ L+   LL   AE  VE LDSD DGLL A DFERLL+V EE
Sbjct: 15 YFDEDGDGKISPSELRNRVGLMGGELLLGEAEMAVESLDSDGDGLLCAGDFERLLEVGEE 74

[Close]
BLAST of Sed0008872 vs. ExPASy TrEMBL
Match: A0A6J1HRH8 (probable calcium-binding protein CML31 OS=Cucurbita maxima OX=3661 GN=LOC111466049 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-07
Identity = 38/61 (62.30%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 14 YFVEDGGNKISPSRLKNQLELIDKGLL--SAEAVVELLDSDDDGLLYANDFERLLKVDEE 73
          YF EDG  KISPS L+N+L LI   LL   AEA VE LDSD DGLL   D ERLL V EE
Sbjct: 15 YFDEDGDGKISPSELRNRLGLIGGELLPAEAEAAVESLDSDGDGLLCVGDIERLLDVGEE 74

[Close]
BLAST of Sed0008872 vs. ExPASy TrEMBL
Match: A0A6J1EJM6 (putative calcium-binding protein CML19 OS=Cucurbita moschata OX=3662 GN=LOC111433200 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-07
Identity = 38/61 (62.30%), Postives = 41/61 (67.21%), Query Frame = 0 

Query: 14 YFVEDGGNKISPSRLKNQLELIDKGLL--SAEAVVELLDSDDDGLLYANDFERLLKVDEE 73
          YF EDG  KISPS L+N+L LI   LL   AEA VE LDSD DGLL   D ERLL V EE
Sbjct: 15 YFDEDGDGKISPSELRNRLGLIGGELLPAEAEAAVESLDSDGDGLLCVGDIERLLDVGEE 74

The following BLAST results are available for this feature:
BLAST of Sed0008872 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038879778.15.8e-0863.93putative calcium-binding protein CML19 [Benincasa hispida][more]
XP_008464450.11.3e-0763.93PREDICTED: putative calcium-binding protein CML19 [Cucumis melo] >KAA0057778.1 p... [more]
XP_022987451.14.9e-0760.66putative calcium-binding protein CML19 [Cucurbita maxima][more]
KAG6587417.16.5e-0762.30putative calcium-binding protein CML19, partial [Cucurbita argyrosperma subsp. s... [more]
XP_023529455.16.5e-0762.30probable calcium-binding protein CML31 [Cucurbita pepo subsp. pepo][more]
BLAST of Sed0008872 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0008872 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7URJ26.3e-0863.93Putative calcium-binding protein CML19 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3CN126.3e-0863.93putative calcium-binding protein CML19 OS=Cucumis melo OX=3656 GN=LOC103502330 P... [more]
A0A6J1JE842.4e-0760.66putative calcium-binding protein CML19 OS=Cucurbita maxima OX=3661 GN=LOC1114849... [more]
A0A6J1HRH83.1e-0762.30probable calcium-binding protein CML31 OS=Cucurbita maxima OX=3661 GN=LOC1114660... [more]
A0A6J1EJM63.1e-0762.30putative calcium-binding protein CML19 OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
BLAST of Sed0008872 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0008872.1Sed0008872.1mRNA