Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGATTCGAGATCCTTATATACGCTGTAGCGTTGTTCTTGGCTCTGATTACCGACACGGATGGTCAATGGCAGCAACCGGAGTTTCCTTCTCGTCCACTCTGCGCCACCCAGGTAACACTAGCAAACTATGCCTGTGCAACACTGCCGTTCTCGGCCCTGCCACCTCCTCCACCTGCAACACCATTACTCCCGGGCAACAATGAAAGCGAAGGCTCTCTGCCCAGCCACAGACACCACCACAGACACCACCACAGGGTCCCGCTTTTGCCAATGGAGAGGAGTTGTTGCAAGTGGGTGCGGCAGATAGATAACGAATGCGTATGCGGGCTGTTGACCAGCTTGCCCGTATTCCTCGGGAGGCCTCAGCATAACTTTACTGTTCTCGTTGGCGGTTCTTGTGAAGTTAGATTCTTTTGCGGAGGAGTAGCCAGAACCTAA
mRNA sequence
ATGGGGAGATTCGAGATCCTTATATACGCTGTAGCGTTGTTCTTGGCTCTGATTACCGACACGGATGGTCAATGGCAGCAACCGGAGTTTCCTTCTCGTCCACTCTGCGCCACCCAGGTAACACTAGCAAACTATGCCTGTGCAACACTGCCGTTCTCGGCCCTGCCACCTCCTCCACCTGCAACACCATTACTCCCGGGCAACAATGAAAGCGAAGGCTCTCTGCCCAGCCACAGACACCACCACAGACACCACCACAGGGTCCCGCTTTTGCCAATGGAGAGGAGTTGTTGCAAGTGGGTGCGGCAGATAGATAACGAATGCGTATGCGGGCTGTTGACCAGCTTGCCCGTATTCCTCGGGAGGCCTCAGCATAACTTTACTGTTCTCGTTGGCGGTTCTTGTGAAGTTAGATTCTTTTGCGGAGGAGTAGCCAGAACCTAA
Coding sequence (CDS)
ATGGGGAGATTCGAGATCCTTATATACGCTGTAGCGTTGTTCTTGGCTCTGATTACCGACACGGATGGTCAATGGCAGCAACCGGAGTTTCCTTCTCGTCCACTCTGCGCCACCCAGGTAACACTAGCAAACTATGCCTGTGCAACACTGCCGTTCTCGGCCCTGCCACCTCCTCCACCTGCAACACCATTACTCCCGGGCAACAATGAAAGCGAAGGCTCTCTGCCCAGCCACAGACACCACCACAGACACCACCACAGGGTCCCGCTTTTGCCAATGGAGAGGAGTTGTTGCAAGTGGGTGCGGCAGATAGATAACGAATGCGTATGCGGGCTGTTGACCAGCTTGCCCGTATTCCTCGGGAGGCCTCAGCATAACTTTACTGTTCTCGTTGGCGGTTCTTGTGAAGTTAGATTCTTTTGCGGAGGAGTAGCCAGAACCTAA
Protein sequence
MGRFEILIYAVALFLALITDTDGQWQQPEFPSRPLCATQVTLANYACATLPFSALPPPPPATPLLPGNNESEGSLPSHRHHHRHHHRVPLLPMERSCCKWVRQIDNECVCGLLTSLPVFLGRPQHNFTVLVGGSCEVRFFCGGVART
Homology
BLAST of Sed0008870 vs. NCBI nr
Match:
XP_031744964.1 (uncharacterized protein LOC116405195 [Cucumis sativus] >KGN44871.1 hypothetical protein Csa_016586 [Cucumis sativus])
HSP 1 Score: 203.4 bits (516), Expect = 1.4e-48
Identity = 89/147 (60.54%), Postives = 113/147 (76.87%), Query Frame = 0
Query: 1 MGRFEILIYAVALFLALITDTDGQWQQPEFPSRPLCATQVTLANYACATLPFSALPPPPP 60
MGRF+ILI +V LFL LITD++ QWQ P RPLCA+Q+TLANYACATLP++ LPPPPP
Sbjct: 1 MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
Query: 61 ATPLLPGNNESEGSL---PSHRHHHRHHHRVPLLPMERSCCKWVRQIDNECVCGLLTSLP 120
+ L N +S+GS H HHHRHHH++PL P+E +CCKWV+Q+D+ECVC LL+ LP
Sbjct: 61 PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP 120
Query: 121 VFLGRPQHNFTVLVGGSCEVRFFCGGV 145
FL RP HNF+V +GGSC ++CGG+
Sbjct: 121 AFLKRPIHNFSVTIGGSCNATYWCGGM 147
BLAST of Sed0008870 vs. NCBI nr
Match:
XP_038899044.1 (uncharacterized protein LOC120086453 [Benincasa hispida])
HSP 1 Score: 201.4 bits (511), Expect = 5.2e-48
Identity = 90/150 (60.00%), Postives = 113/150 (75.33%), Query Frame = 0
Query: 1 MGRFEILIYAVALFLALITDTDGQWQQPEFPSRPLCATQVTLANYACATLPFSALPPPPP 60
MGRF+ILI++V LFLALITDT+GQWQ P+ RPLCA+Q+ LANYACA LP+S + PPPP
Sbjct: 1 MGRFKILIFSVTLFLALITDTEGQWQPPDVAPRPLCASQIALANYACAMLPYSTVLPPPP 60
Query: 61 ATPLLPGNNESEGS-------LPSHRHHHRHHHRVPLLPMERSCCKWVRQIDNECVCGLL 120
+ L N+ES+GS H HHH H ++PL PME +CCKWV+Q+D+EC+CGLL
Sbjct: 61 PSLSLSDNHESQGSPNQRHRHTHQHGHHHGHQQKIPLSPMEENCCKWVQQLDSECICGLL 120
Query: 121 TSLPVFLGRPQHNFTVLVGGSCEVRFFCGG 144
+ LP FL RPQHNF+V VGGSC+ + CGG
Sbjct: 121 SRLPAFLERPQHNFSVTVGGSCDATYSCGG 150
BLAST of Sed0008870 vs. NCBI nr
Match:
XP_023548911.1 (uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 168.7 bits (426), Expect = 3.8e-38
Identity = 79/147 (53.74%), Postives = 101/147 (68.71%), Query Frame = 0
Query: 1 MGRFEILIYAVALFLALITDTDGQWQQPEFPSRPLCATQVTLANYACATLPFSALPPPPP 60
MGRF+IL++AV LFLALI DT+ QWQ P+ RP C +Q+ LAN ACA LP+S + PP
Sbjct: 1 MGRFKILLFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTMALSPP 60
Query: 61 ATPLLPGNNESEGSLPSHR----HHHRHHHRVPLLPMERSCCKWVRQIDNECVCGLLTSL 120
+ L N+ES G P+HR H H H H++ L PME +CCKWV+Q+D++C+C LL+ L
Sbjct: 61 SVS-LSDNHESHGPPPNHRHLHTHWHGHQHQISLSPMEENCCKWVQQLDSQCLCRLLSRL 120
Query: 121 PVFLGRPQHNFTVLVGGSCEVRFFCGG 144
P FL RPQH + VGGSC F CGG
Sbjct: 121 PAFLERPQHKISFSVGGSCNATFSCGG 146
BLAST of Sed0008870 vs. NCBI nr
Match:
KAA0057606.1 (hypothetical protein E6C27_scaffold497G00830 [Cucumis melo var. makuwa] >TYK20987.1 hypothetical protein E5676_scaffold328G00120 [Cucumis melo var. makuwa])
HSP 1 Score: 167.9 bits (424), Expect = 6.4e-38
Identity = 74/127 (58.27%), Postives = 94/127 (74.02%), Query Frame = 0
Query: 23 GQWQQPEFPSRPLCATQVTLANYACATLPFSALPPPPPATPLLPGNNESEGS---LPSHR 82
GQWQ P RPLCA+Q+ LANYACATLP+S L PPPP + L N++S+GS H
Sbjct: 83 GQWQPPAVAPRPLCASQIALANYACATLPYSKLLPPPPPSSSLSSNHDSQGSPVHTHHHG 142
Query: 83 HHHRHHHRVPLLPMERSCCKWVRQIDNECVCGLLTSLPVFLGRPQHNFTVLVGG--SCEV 142
HHHRHHH++PL P+E +CCKWV+Q+D+ECVC LL+ LP FL RP HNF+V++GG SC
Sbjct: 143 HHHRHHHKIPLSPIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNFSVIIGGSLSCNA 202
Query: 143 RFFCGGV 145
+ CGG+
Sbjct: 203 TYSCGGM 209
BLAST of Sed0008870 vs. NCBI nr
Match:
KAG7014427.1 (hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 152.1 bits (383), Expect = 3.6e-33
Identity = 73/142 (51.41%), Postives = 96/142 (67.61%), Query Frame = 0
Query: 1 MGRFEILIYAVALFLALITDTDGQWQQPEFPSRPLCATQVTLANYACATLPFSALPPPPP 60
M RF+ILI+AV LFLALI DT+ QWQ P+ RP C +Q+ LAN ACA LP+S + PP
Sbjct: 1 MERFKILIFAVTLFLALIPDTEAQWQPPKVAPRPPCPSQIALANLACAMLPYSTMALSPP 60
Query: 61 ATPLLPGNNESEGSLPSHR----HHHRHHHRVPLLPMERSCCKWVRQIDNECVCGLLTSL 120
+ L N+ES G P+H+ H H H H++ L PME +CCKWV+Q+D++C+C LL+ L
Sbjct: 61 SLS-LSDNHESHGLPPNHKHLRTHWHGHQHQISLSPMEENCCKWVQQLDSQCLCRLLSRL 120
Query: 121 PVFLGRPQHNFTVLVGGSCEVR 139
P FL RPQH + VGG+ R
Sbjct: 121 PAFLERPQHKISFSVGGNSTTR 141
BLAST of Sed0008870 vs. ExPASy TrEMBL
Match:
A0A0A0KAN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392440 PE=4 SV=1)
HSP 1 Score: 203.4 bits (516), Expect = 6.7e-49
Identity = 89/147 (60.54%), Postives = 113/147 (76.87%), Query Frame = 0
Query: 1 MGRFEILIYAVALFLALITDTDGQWQQPEFPSRPLCATQVTLANYACATLPFSALPPPPP 60
MGRF+ILI +V LFL LITD++ QWQ P RPLCA+Q+TLANYACATLP++ LPPPPP
Sbjct: 1 MGRFKILILSVVLFLTLITDSESQWQPPGVAPRPLCASQITLANYACATLPYAKLPPPPP 60
Query: 61 ATPLLPGNNESEGSL---PSHRHHHRHHHRVPLLPMERSCCKWVRQIDNECVCGLLTSLP 120
+ L N +S+GS H HHHRHHH++PL P+E +CCKWV+Q+D+ECVC LL+ LP
Sbjct: 61 PSSSLSNNQDSQGSPVHGHHHGHHHRHHHKIPLTPIEENCCKWVQQVDSECVCELLSRLP 120
Query: 121 VFLGRPQHNFTVLVGGSCEVRFFCGGV 145
FL RP HNF+V +GGSC ++CGG+
Sbjct: 121 AFLKRPIHNFSVTIGGSCNATYWCGGM 147
BLAST of Sed0008870 vs. ExPASy TrEMBL
Match:
A0A5A7UTY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00120 PE=4 SV=1)
HSP 1 Score: 167.9 bits (424), Expect = 3.1e-38
Identity = 74/127 (58.27%), Postives = 94/127 (74.02%), Query Frame = 0
Query: 23 GQWQQPEFPSRPLCATQVTLANYACATLPFSALPPPPPATPLLPGNNESEGS---LPSHR 82
GQWQ P RPLCA+Q+ LANYACATLP+S L PPPP + L N++S+GS H
Sbjct: 83 GQWQPPAVAPRPLCASQIALANYACATLPYSKLLPPPPPSSSLSSNHDSQGSPVHTHHHG 142
Query: 83 HHHRHHHRVPLLPMERSCCKWVRQIDNECVCGLLTSLPVFLGRPQHNFTVLVGG--SCEV 142
HHHRHHH++PL P+E +CCKWV+Q+D+ECVC LL+ LP FL RP HNF+V++GG SC
Sbjct: 143 HHHRHHHKIPLSPIEENCCKWVQQVDSECVCELLSRLPAFLKRPIHNFSVIIGGSLSCNA 202
Query: 143 RFFCGGV 145
+ CGG+
Sbjct: 203 TYSCGGM 209
BLAST of Sed0008870 vs. ExPASy TrEMBL
Match:
A0A1R3I583 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14841 PE=4 SV=1)
HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 66/142 (46.48%), Postives = 83/142 (58.45%), Query Frame = 0
Query: 21 TDGQWQQPEFPSRPLCATQVTLANYACATLPF------SALPPPPPATPLLP-------- 80
T Q +P+ P PLCA+Q LANYAC +P + LPPPPP +P P
Sbjct: 24 TLSQLIRPQPPPVPLCASQFALANYACVKVPLVQLPPPAPLPPPPPDSPPPPEAEGHRHH 83
Query: 81 -----GNNESEGSLPSHRHHHRHHHRVPLLPMERSCCKWVRQIDNECVCGLLTSLPVFLG 140
GN S+G H HHHRH HR P ER+CC+W++QIDNECVC +L LP FL
Sbjct: 84 HRHGHGNGNSQGQGNGHGHHHRHRHRHHETPDERNCCRWLQQIDNECVCDVLVHLPPFLS 143
Query: 141 RPQHNFTVLVGGSCEVRFFCGG 144
RP H++TV+V +C V + CGG
Sbjct: 144 RPNHDYTVVVDETCSVTYKCGG 165
BLAST of Sed0008870 vs. ExPASy TrEMBL
Match:
A0A1Q3CRD9 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_26186 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 65/137 (47.45%), Postives = 87/137 (63.50%), Query Frame = 0
Query: 9 YAVALFLALITDTDGQWQQ--PEFPSRPLCATQVTLANYACATLPFSALPPPPPATPLLP 68
+ + +FLAL+ +GQ + P P RPLC +QV+LANYAC LPFS PP P +P P
Sbjct: 10 FLIMVFLALLHRLEGQPRPVLPIPPPRPLCPSQVSLANYACLALPFSPGAPPTPPSPDDP 69
Query: 69 GNNESEGSLPSHRHHHRH-HHRVPLLPMERSCCKWVRQIDNECVCGLLTSLPVFLGRPQH 128
+ + G H HHHRH HH+ P E +CC+WV+++D+ CVC LL LP FL RP H
Sbjct: 70 DDPDLGGR--HHHHHHRHKHHKHHQTPEEENCCRWVKEVDDVCVCDLLVRLPAFLARPVH 129
Query: 129 NFTVLVGGSCEVRFFCG 143
++TV+V SC V + CG
Sbjct: 130 DYTVVVSQSCNVTYSCG 144
BLAST of Sed0008870 vs. ExPASy TrEMBL
Match:
A0A1R3KD53 (Tetratricopeptide repeat-containing protein-like protein OS=Corchorus olitorius OX=93759 GN=COLO4_09131 PE=4 SV=1)
HSP 1 Score: 129.8 bits (325), Expect = 9.4e-27
Identity = 65/147 (44.22%), Postives = 85/147 (57.82%), Query Frame = 0
Query: 14 FLALITDTDGQWQQPEFPSRPLCATQVTLANYACATLPF------SALPPPPPATPLLP- 73
F+ + T Q +P+ P PLCA+Q LANYAC +P + LPPPPP +P P
Sbjct: 16 FVTQLPITLSQLIRPQPPPVPLCASQFALANYACVKVPLVQLPPPAPLPPPPPDSPPPPE 75
Query: 74 ----------GNNESEGSLPSHRHHHRHHHRVPLLPMERSCCKWVRQIDNECVCGLLTSL 133
G+ S+G H H HRH HR P ER+CC+W++QIDNECVC +L L
Sbjct: 76 AEGHRHHHRHGHGNSQGQENGHGHRHRHRHRHHETPDERNCCRWLQQIDNECVCDVLVHL 135
Query: 134 PVFLGRPQHNFTVLVGGSCEVRFFCGG 144
P FL RP H++TV+V +C V + CGG
Sbjct: 136 PPFLSRPNHDYTVVVDETCSVTYKCGG 162
BLAST of Sed0008870 vs. TAIR 10
Match:
AT3G63095.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 99.0 bits (245), Expect = 3.4e-21
Identity = 72/245 (29.39%), Postives = 87/245 (35.51%), Query Frame = 0
Query: 5 EILIYAVALFLALITDTDGQWQQPEFPSRPLCATQVTLANYACATLPFSALPPP----PP 64
+ L AV L LAL + T GQ P RPLCA+Q LANYAC+ LP +PPP PP
Sbjct: 2 DTLFIAVTLALALSSFTRGQRVIQIPPPRPLCASQYALANYACSRLPMHTVPPPAPITPP 61
Query: 65 ATPLLP------------------------------------------------------ 124
P+ P
Sbjct: 62 PAPIAPPPPEHDHHDHDHDHDHDHDHDDDHDDDDDHDHDDDHDHDHDDDHDHDDDDRDRD 121
Query: 125 -----------------------------------------------GNNESEGSLPSHR 144
N+ + HR
Sbjct: 122 RDRDRDRDRDRDHDRAHDDHDHNHDHDNDHNDNNHDHNHDADHHNNDDNSHDQHRRRHHR 181
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_031744964.1 | 1.4e-48 | 60.54 | uncharacterized protein LOC116405195 [Cucumis sativus] >KGN44871.1 hypothetical ... | [more] |
XP_038899044.1 | 5.2e-48 | 60.00 | uncharacterized protein LOC120086453 [Benincasa hispida] | [more] |
XP_023548911.1 | 3.8e-38 | 53.74 | uncharacterized protein LOC111807420 [Cucurbita pepo subsp. pepo] | [more] |
KAA0057606.1 | 6.4e-38 | 58.27 | hypothetical protein E6C27_scaffold497G00830 [Cucumis melo var. makuwa] >TYK2098... | [more] |
KAG7014427.1 | 3.6e-33 | 51.41 | hypothetical protein SDJN02_24604, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KAN7 | 6.7e-49 | 60.54 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392440 PE=4 SV=1 | [more] |
A0A5A7UTY5 | 3.1e-38 | 58.27 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1R3I583 | 1.4e-27 | 46.48 | Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14841 PE=4 ... | [more] |
A0A1Q3CRD9 | 1.9e-27 | 47.45 | Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_26186 PE=4... | [more] |
A0A1R3KD53 | 9.4e-27 | 44.22 | Tetratricopeptide repeat-containing protein-like protein OS=Corchorus olitorius ... | [more] |
Match Name | E-value | Identity | Description | |
AT3G63095.1 | 3.4e-21 | 29.39 | Tetratricopeptide repeat (TPR)-like superfamily protein | [more] |