Sed0008867 (gene) Chayote v1

Overview


Name	Sed0008867
Type	gene
Organism	Sechium edule (Chayote v1)
Description	nuclear transcription factor Y subunit C-1-like
Location	LG07: 13031819 .. 13032172 (+)
RNA-Seq Expression	Sed0008867
Synteny	Sed0008867

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAAGCGGGAGCGTATTCGGGGGCGATGTACTGGAAGACGGGGCCGCACTCGCTGCCGTTGGCGAGGATAAAGAAGATAATGAAGAAGTCGGGGGAGGAAGTGAAGATGATTTCGTGCGAGGCTCCCATGGTGTTCTCGAAGGCCTGCGAGCTGTTCATCGAGGAATTGACGAGGCGATCCTGGATGATTGCGATGCAGAATAAGAAGCGGATGCTTCAGAAAGAGGATGTGGCTTCTGCCATTTTGGCTACTGATCTTTTCGACTTTCTTGTCGGATTGATCTTCCATGAAACCGCCACCGCCTCTGCCTCCGCTGCTGATATTGCTCAAACTGAATCTCTATCCTGA

mRNA sequence

ATGAGGCAAGCGGGAGCGTATTCGGGGGCGATGTACTGGAAGACGGGGCCGCACTCGCTGCCGTTGGCGAGGATAAAGAAGATAATGAAGAAGTCGGGGGAGGAAGTGAAGATGATTTCGTGCGAGGCTCCCATGGTGTTCTCGAAGGCCTGCGAGCTGTTCATCGAGGAATTGACGAGGCGATCCTGGATGATTGCGATGCAGAATAAGAAGCGGATGCTTCAGAAAGAGGATGTGGCTTCTGCCATTTTGGCTACTGATCTTTTCGACTTTCTTGTCGGATTGATCTTCCATGAAACCGCCACCGCCTCTGCCTCCGCTGCTGATATTGCTCAAACTGAATCTCTATCCTGA

Coding sequence (CDS)

ATGAGGCAAGCGGGAGCGTATTCGGGGGCGATGTACTGGAAGACGGGGCCGCACTCGCTGCCGTTGGCGAGGATAAAGAAGATAATGAAGAAGTCGGGGGAGGAAGTGAAGATGATTTCGTGCGAGGCTCCCATGGTGTTCTCGAAGGCCTGCGAGCTGTTCATCGAGGAATTGACGAGGCGATCCTGGATGATTGCGATGCAGAATAAGAAGCGGATGCTTCAGAAAGAGGATGTGGCTTCTGCCATTTTGGCTACTGATCTTTTCGACTTTCTTGTCGGATTGATCTTCCATGAAACCGCCACCGCCTCTGCCTCCGCTGCTGATATTGCTCAAACTGAATCTCTATCCTGA

Protein sequence

MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAADIAQTESLS

Homology

[Close]

BLAST of Sed0008867 vs. NCBI nr
Match: XP_038877432.1 (nuclear transcription factor Y subunit C-1-like [Benincasa hispida])

HSP 1 Score: 196.8 bits (499), Expect = 1.0e-46
Identity = 101/120 (84.17%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTR 60
           MRQAGAYSG MYWKTGPHSLPLARIKKIMKKSGEEVKMIS EAP+VFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAA---DIAQTESLS 118
           RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIF+ETATA+A+AA   D+A++E++S
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATATAAAAAGGDLAESENMS 120

[Close]

BLAST of Sed0008867 vs. NCBI nr
Match: XP_023552994.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-46
Identity = 99/118 (83.90%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTR 60
           MRQAGAYSG  YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAP+VFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAA-DIAQTESLS 118
           RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIFHET T +ASAA D+A++E++S
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTPAASAAGDLAESETMS 118

[Close]

BLAST of Sed0008867 vs. NCBI nr
Match: KAG6577185.1 (hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191.4 bits (485), Expect = 4.3e-45
Identity = 95/119 (79.83%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1    MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTR 60
            MRQAGAYSG  YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAP+VFSKACELF+EELT+
Sbjct: 1084 MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 1143

Query: 61   RSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATA--SASAADIAQTESLS 118
            RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIFHET TA  +++AA++ ++E++S
Sbjct: 1144 RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMS 1202

[Close]

BLAST of Sed0008867 vs. NCBI nr
Match: XP_022931515.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita moschata] >KAG7015184.1 Nuclear transcription factor Y subunit C-4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 191.4 bits (485), Expect = 4.3e-45
Identity = 95/119 (79.83%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTR 60
           MRQAGAYSG  YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAP+VFSKACELF+EELT+
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60

Query: 61  RSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATA--SASAADIAQTESLS 118
           RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIFHET TA  +++AA++ ++E++S
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMS 119

[Close]

BLAST of Sed0008867 vs. NCBI nr
Match: XP_004146566.1 (nuclear transcription factor Y subunit C-3 [Cucumis sativus] >KGN53346.1 hypothetical protein Csa_014665 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 4.3e-45
Identity = 97/117 (82.91%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTR 60
           MRQAGAYSG MYWKTGPHSLPLARIKKIMKKSGEEVKMIS EAP+VFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAADIAQTESLS 118
           RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIF+ETAT +A+  D+ ++E++S
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAAT-GDLGESETIS 116

[Close]

BLAST of Sed0008867 vs. ExPASy Swiss-Prot
Match: Q9FMV5 (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKE 77
           H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQK 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDLFDFLVGLIFHETATASASAA 109
           D+A+AI  TD+FDFLV ++  E       AA
Sbjct: 137 DIAAAITRTDIFDFLVDIVPREEIKEEEDAA 166

[Close]

BLAST of Sed0008867 vs. ExPASy Swiss-Prot
Match: Q655V5 (Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-21
Identity = 51/79 (64.56%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKE 77
           HSLPLARIKKIM K+ E+V+MIS EAP++F+KACE+FI ELT RSWM   +NK+R LQK 
Sbjct: 100 HSLPLARIKKIM-KADEDVRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKN 159

Query: 78  DVASAILATDLFDFLVGLI 97
           D+A+AI  TD++DFLV ++
Sbjct: 160 DIAAAITRTDMYDFLVDIV 177

[Close]

BLAST of Sed0008867 vs. ExPASy Swiss-Prot
Match: Q9SMP0 (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKE 77
           H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQK 
Sbjct: 64  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDLFDFLVGLI 97
           D+A+AI  TD+FDFLV ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]

BLAST of Sed0008867 vs. ExPASy Swiss-Prot
Match: A6BLW4 (Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC2 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKE 77
           H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQ+ 
Sbjct: 68  HQLPLARIKKIM-KADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRN 127

Query: 78  DVASAILATDLFDFLVGLIFHETATASASAA 109
           DVA+AI  TD+FDFLV ++  E A     +A
Sbjct: 128 DVAAAIARTDVFDFLVDIVPREEAKEEPGSA 157

[Close]

BLAST of Sed0008867 vs. ExPASy Swiss-Prot
Match: Q9ZVL3 (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.5e-21
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKE 77
           HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    +NK+R LQK 
Sbjct: 69  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDLFDFLVGLIFHE 100
           D+A+A+  TD+FDFLV ++  E
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPRE 149

[Close]

BLAST of Sed0008867 vs. ExPASy TrEMBL
Match: A0A0A0KZN6 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G049050 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 97/117 (82.91%), Postives = 110/117 (94.02%), Query Frame = 0


Query: 1   MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTR 60
           MRQAGAYSG MYWKTGPHSLPLARIKKIMKKSGEEVKMIS EAP+VFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAADIAQTESLS 118
           RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIF+ETAT +A+  D+ ++E++S
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAAT-GDLGESETIS 116

[Close]

BLAST of Sed0008867 vs. ExPASy TrEMBL
Match: A0A6J1EZM2 (nuclear transcription factor Y subunit C-4-like OS=Cucurbita moschata OX=3662 GN=LOC111437669 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 95/119 (79.83%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTR 60
           MRQAGAYSG  YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAP+VFSKACELF+EELT+
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60

Query: 61  RSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATA--SASAADIAQTESLS 118
           RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIFHET TA  +++AA++ ++E++S
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMS 119

[Close]

BLAST of Sed0008867 vs. ExPASy TrEMBL
Match: A0A5A7TSI3 (Nuclear transcription factor Y subunit C-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004550 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.6e-45
Identity = 97/117 (82.91%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTR 60
           MRQAGAYSG MYWKTGPHSLPLARIKKIMKKSGEEVKMIS EAP+VFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAADIAQTESLS 118
           RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIF+ETA   A+A D+ ++E++S
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA---ATAGDVGESENIS 114

[Close]

BLAST of Sed0008867 vs. ExPASy TrEMBL
Match: A0A1S3BSA0 (nuclear transcription factor Y subunit C-1-like OS=Cucumis melo OX=3656 GN=LOC103493153 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.6e-45
Identity = 97/117 (82.91%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 1   MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTR 60
           MRQAGAYSG MYWKTGPHSLPLARIKKIMKKSGEEVKMIS EAP+VFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHETATASASAADIAQTESLS 118
           RSWMIAMQ+KKRML KEDVASAILATD+FDFL+GLIF+ETA   A+A D+ ++E++S
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA---ATAGDVGESENIS 114

[Close]

BLAST of Sed0008867 vs. ExPASy TrEMBL
Match: A0A6J1J883 (nuclear transcription factor Y subunit C-4-like OS=Cucurbita maxima OX=3661 GN=LOC111483463 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.1e-45
Identity = 99/121 (81.82%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MRQAGAYSGAMYWKTGPHSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTR 60
           MRQAGAYSG  YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAP+VFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQNKKRMLQKEDVASAILATDLFDFLVGLIFHET---ATASASAA-DIAQTESL 118
           RSWMIAM +KKRML KEDVASAILATD+FDFL+GLIFHET   A+ASASAA D+ ++E++
Sbjct: 61  RSWMIAMHSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASASAAGDLPESETM 120

[Close]

BLAST of Sed0008867 vs. TAIR 10
Match: AT5G63470.1 (nuclear factor Y, subunit C4 )

HSP 1 Score: 104.0 bits (258), Expect = 8.4e-23
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKE 77
           H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQK 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDLFDFLVGLIFHETATASASAA 109
           D+A+AI  TD+FDFLV ++  E       AA
Sbjct: 137 DIAAAITRTDIFDFLVDIVPREEIKEEEDAA 166

[Close]

BLAST of Sed0008867 vs. TAIR 10
Match: AT5G63470.2 (nuclear factor Y, subunit C4 )

HSP 1 Score: 104.0 bits (258), Expect = 8.4e-23
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKE 77
           H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQK 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDLFDFLVGLIFHETATASASAA 109
           D+A+AI  TD+FDFLV ++  E       AA
Sbjct: 137 DIAAAITRTDIFDFLVDIVPREEIKEEEDAA 166

[Close]

BLAST of Sed0008867 vs. TAIR 10
Match: AT3G48590.1 (nuclear factor Y, subunit C1 )

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-22
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKE 77
           H LPLARIKKIM K+ E+V+MIS EAP++F+KACELFI ELT RSW+ A +NK+R LQK 
Sbjct: 64  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDLFDFLVGLI 97
           D+A+AI  TD+FDFLV ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]

BLAST of Sed0008867 vs. TAIR 10
Match: AT1G08970.4 (nuclear factor Y, subunit C9 )

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-22
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKE 77
           HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    +NK+R LQK 
Sbjct: 79  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 138

Query: 78  DVASAILATDLFDFLVGLIFHE 100
           D+A+A+  TD+FDFLV ++  E
Sbjct: 139 DIAAAVTRTDIFDFLVDIVPRE 159

[Close]

BLAST of Sed0008867 vs. TAIR 10
Match: AT1G54830.2 (nuclear factor Y, subunit C3 )

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-22
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEEVKMISCEAPMVFSKACELFIEELTRRSWMIAMQNKKRMLQKE 77
           HSLPLARIKKIM K+ E+V+MIS EAP+VF++ACE+FI ELT RSW    +NK+R LQK 
Sbjct: 69  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDLFDFLVGLIFHE 100
           D+A+A+  TD+FDFLV ++  E
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPRE 149

The following BLAST results are available for this feature:

BLAST of Sed0008867 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877432.1	1.0e-46	84.17	nuclear transcription factor Y subunit C-1-like [Benincasa hispida]	[more]
XP_023552994.1	1.7e-46	83.90	nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]	[more]
KAG6577185.1	4.3e-45	79.83	hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931515.1	4.3e-45	79.83	nuclear transcription factor Y subunit C-4-like [Cucurbita moschata] >KAG7015184...	[more]
XP_004146566.1	4.3e-45	82.91	nuclear transcription factor Y subunit C-3 [Cucumis sativus] >KGN53346.1 hypothe...	[more]

BLAST of Sed0008867 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMV5	1.2e-21	60.44	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q655V5	1.2e-21	64.56	Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9SMP0	1.5e-21	65.82	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
A6BLW4	1.5e-21	60.44	Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q9ZVL3	4.5e-21	62.20	Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Sed0008867 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZN6	2.1e-45	82.91	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G0490...	[more]
A0A6J1EZM2	2.1e-45	79.83	nuclear transcription factor Y subunit C-4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7TSI3	3.6e-45	82.91	Nuclear transcription factor Y subunit C-1-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BSA0	3.6e-45	82.91	nuclear transcription factor Y subunit C-1-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1J883	6.1e-45	81.82	nuclear transcription factor Y subunit C-4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Sed0008867 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63470.1	8.4e-23	60.44	nuclear factor Y, subunit C4	[more]
AT5G63470.2	8.4e-23	60.44	nuclear factor Y, subunit C4	[more]
AT3G48590.1	1.1e-22	65.82	nuclear factor Y, subunit C1	[more]
AT1G08970.4	3.2e-22	62.20	nuclear factor Y, subunit C9	[more]
AT1G54830.2	3.2e-22	62.20	nuclear factor Y, subunit C3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 8..96 e-value: 1.1E-30 score: 108.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 14..92
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 19..83 e-value: 2.6E-17 score: 62.8
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 1..103
None	No IPR available	PANTHER	PTHR10252:SF41	HAP5 SUBUNIT OF HAP COMPLEX	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008867.1	Sed0008867.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity