Sed0008856 (gene) Chayote v1

Overview


Name	Sed0008856
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG13: 19412663 .. 19415299 (+)
RNA-Seq Expression	Sed0008856
Synteny	Sed0008856

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGTCACAGATATTTGAGGAGCAATTTTGTGGAATATGGTGAAATATTCAAAAAAATAAAATAAATAAAGAGGTTTTTGATTGTCGTCCCGCTGGCCAAACCCTCAGTGCCTCGAACGCTCCGTAACTTTCTCTCTCAAATCCTGTCTGCAACTTCCGCCATTTTGATTCTCAGGTTTCTTCTCTCTTTTCTCTTCTTCTCTTTTGTTCTTCCATTCCCTCTTGCTGTTCTCAACTCCATTGCCCAGAATCTTCAATTCCCCCCTGCATCCTCCATTTCTTTTCCAGTTTTCGCATGTATTCTCACTTTTCTTACCTCTCTCGCCGCTCTTGATTCCGTTTTGTTGTGAATTTGATTTTACCTGCTTTTTTGCTCTTCTTCTCTAATGGGTCGGCGCGGAAAATCCCAATTAGGGCTTTATTGGGGCTTCAGCTTCATTTTCTTTTCTTATCACTTTCTTCATTCTTGCTTGTTTCTGTGTGGTGTTTTTTTTTAGCAATCACTGTTGGGTTTTCTGCAGGGAGTTCTAGGTTCGCAGCTGTATTCTCACGAGATTCACTCTAATTAGCATCTTTGTTTTTTAATAAGGTTGCTTCAATATTATGTATTGTTCAAGTTGGCAGTATCAGGGCCTGTTGATGTTTATTCTGAAGGAACTTTCTAGTGGGTGATTGTTTGATTTGGGTTTGTCTTGAAAGTGGCAAACTAGTTTGGATTTATTTTGAAACTGAAGGGATGGGTTTTCTTTTAGACCTTTGGATTGTCTAATGTTTGCCTAGATTATAATCTCTGTTGTTAGCTCTTGGACTCCCTTTTGTTGTTTGTCTTGTTTTTTGTATGCCCTTGTTTTTCTTTCTTTTTTTTTTCAATGGAAGCTCAGTTTCTTACCAAAAAAACAATAAATAATAGTCTTCTAGTATATGCCATAAACTTATAGTGATTCATTTTAAGTATTGAAAGCCTTGTTCCACTTGATTTATTTTATTCACTATACTTGATACTTATTTTTTGAATTATTTGAAATTCCTTTTTCAAGTTTGCTGCTTTTCCCCTTTAGTCTAACTTATATAATACGATTTAAAGATTTTTATATAGAGAAGTTGGATGGCCTAGGTCCCTGAGGGGTGTCGCAGTGGTTGAAGGCTTGGACTTTGAAGGTATGCTCCCTTCAAGTTATCAGGCGATTCGACATTACTCTTCGATGTCTCCGATGCCTTGCCTGGGCGTGGTTACTTTGTTTCAAAAAAAATTAAAAGTTGGATGGCCTAGGCCAAATAGCACTGTGATTAACTACCAAAGTTTTGAGTTCTCACTGTTAACATTAGAAATTGAAGATGAAAGATTTAAAATCTCAACCCTTTTTGAGTTATAGGAAGGCCTTTGTGGTGGGTTGCCTTTCATTTATACCTTATGGAATGTTTCTTTTATACCTTATGGAATGTATTTAAAGGACGACGAGATCTTTTTGGAGGGGGAGGTCTGGGCCTTAGTTAGGTTTTAGAAATCTTGTGTGGTTTCTAGAATATGTAAACTAAGTTGCTTTTCAAATTTAGTTTAGATTCAAAAGAATCCGTTTAGAAGTTTATCTTTGTAATAATAAACAAAACACTGAAAACAAAAAGTTCACCAAATGCACTAAGAAGTTATTAATTAATCAATGGTCTGCCTTTATTCTAGAGAGATTCGGTAATACTGATAACTGGTACTTTTCTTTTTCCGATACCATTTTTAGGTTACTTCCTTTTCTGGACGGTTCTATGGGTAAAGGACGTGTTCGTGGCACAAGTTTAGGACCCTCCTCCACCATAGTGTTCAAGTCTACACCACGTCGATTTACCGAGATCGAGATTCATGACGAGGCCAATATTGAGATTGATGATGAGCCAAATATGGAAGATTACCAAGATGTAGATGCTAGACTTTCGCTATTAGAGTTGAAAATGGCCAATATGCTTTCGATTTTGGAACAAAATGGTTTCATGCAAGCCAATAGTGCAACTGCTGCACATACAAATGGTGATTCGCCATACTGCGTATACAAGAATCCTGGACGTGTTTGTAGCATGAAAATACAACCTACCTCGACTCAAGTGTTCAGATCTGTCTCGCAACGTAATATCCGTAACGAGGCTCATATGGATCAAAACGTAGATACTAGACTTTTGATATTAGAGGTGCAAATGAACAAGGTAGTTTCGATTTTACGACGAAATGGTGTCATGCAAGGCGACATCTGAGAAGAACCACACAAAAGTCTCAAGACAGGTATGCCTTTTTCTGTTATAATCTTGTTGTTTCCAAGTGGATTTAATCATTATTATTATGGTTATTTATTATTAGGAACCTGGAGTTAACACACTGCTGTTGGATTAAGTTGGTGAAGTCTACTCAACACATCTTTTCTAATATTTTTGAAGCTGTTATGGTAAAACAATTTGATCTAGTAATCTCTCTAGGGATAAATATTGTTGTTTTGTTTAGATTTTTGGGAATGATATGAAGAATGTGTTAGATTATTCCTCCTACTTTCAACATTTTTTGTGTTGAAATCTTATAGATGGTAGTGCAGATATATGTACTTGTCACATAAAAGTACAGATATATTAAGATATGTGTTAACATAAATATATTTTCCAA

mRNA sequence

CGGTCACAGATATTTGAGGAGCAATTTTGTGGAATATGGTGAAATATTCAAAAAAATAAAATAAATAAAGAGGTTTTTGATTGTCGTCCCGCTGGCCAAACCCTCAGTGCCTCGAACGCTCCGTAACTTTCTCTCTCAAATCCTGTCTGCAACTTCCGCCATTTTGATTCTCAGGTTACTTCCTTTTCTGGACGGTTCTATGGGTAAAGGACGTGTTCGTGGCACAAGTTTAGGACCCTCCTCCACCATAGTGTTCAAGTCTACACCACGTCGATTTACCGAGATCGAGATTCATGACGAGGCCAATATTGAGATTGATGATGAGCCAAATATGGAAGATTACCAAGATGTAGATGCTAGACTTTCGCTATTAGAGTTGAAAATGGCCAATATGCTTTCGATTTTGGAACAAAATGGTTTCATGCAAGCCAATAGTGCAACTGCTGCACATACAAATGGTGATTCGCCATACTGCGTATACAAGAATCCTGGACGTGTTTGTAGCATGAAAATACAACCTACCTCGACTCAAGTGTTCAGATCTGTCTCGCAACGTAATATCCGTAACGAGGCTCATATGGATCAAAACGTAGATACTAGACTTTTGATATTAGAGGTGCAAATGAACAAGGTAGTTTCGATTTTACGACGAAATGGTGTCATGCAAGGCGACATCTGAGAAGAACCACACAAAAGTCTCAAGACAGGAACCTGGAGTTAACACACTGCTGTTGGATTAAGTTGGTGAAGTCTACTCAACACATCTTTTCTAATATTTTTGAAGCTGTTATGGTAAAACAATTTGATCTAGTAATCTCTCTAGGGATAAATATTGTTGTTTTGTTTAGATTTTTGGGAATGATATGAAGAATGTGTTAGATTATTCCTCCTACTTTCAACATTTTTTGTGTTGAAATCTTATAGATGGTAGTGCAGATATATGTACTTGTCACATAAAAGTACAGATATATTAAGATATGTGTTAACATAAATATATTTTCCAA

Coding sequence (CDS)

ATGGGTAAAGGACGTGTTCGTGGCACAAGTTTAGGACCCTCCTCCACCATAGTGTTCAAGTCTACACCACGTCGATTTACCGAGATCGAGATTCATGACGAGGCCAATATTGAGATTGATGATGAGCCAAATATGGAAGATTACCAAGATGTAGATGCTAGACTTTCGCTATTAGAGTTGAAAATGGCCAATATGCTTTCGATTTTGGAACAAAATGGTTTCATGCAAGCCAATAGTGCAACTGCTGCACATACAAATGGTGATTCGCCATACTGCGTATACAAGAATCCTGGACGTGTTTGTAGCATGAAAATACAACCTACCTCGACTCAAGTGTTCAGATCTGTCTCGCAACGTAATATCCGTAACGAGGCTCATATGGATCAAAACGTAGATACTAGACTTTTGATATTAGAGGTGCAAATGAACAAGGTAGTTTCGATTTTACGACGAAATGGTGTCATGCAAGGCGACATCTGA

Protein sequence

MGKGRVRGTSLGPSSTIVFKSTPRRFTEIEIHDEANIEIDDEPNMEDYQDVDARLSLLELKMANMLSILEQNGFMQANSATAAHTNGDSPYCVYKNPGRVCSMKIQPTSTQVFRSVSQRNIRNEAHMDQNVDTRLLILEVQMNKVVSILRRNGVMQGDI

Homology

[Close]

BLAST of Sed0008856 vs. NCBI nr
Match: KGN65730.1 (hypothetical protein Csa_019939 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 5.3e-62
Identity = 125/159 (78.62%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 1   MGKGRVRGTSLGPSSTIVFKSTPRRFTEIEIHDEANIEIDDEPNMEDYQDVDARLSLLEL 60
           MGKGRVRG  LGP+STIVFKSTPR+FTE EIHDEA        N+EDYQ+VDARLS+LEL
Sbjct: 1   MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEA--------NLEDYQNVDARLSILEL 60

Query: 61  KMANMLSILEQNGFMQANSATAAHTNGDSPYCVYKNPGRVCSMKIQPTSTQVFRSVSQRN 120
           KMANM+SILEQNGFMQ+N+ TA HTNGD PYC+YKNPGRVCSM++QP STQVFRS+S RN
Sbjct: 61  KMANMISILEQNGFMQSNNPTATHTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRN 120

Query: 121 IRNEAHMDQNVDTRLLILEVQMNKVVSILRRNGVMQGDI 160
           IRNEA MDQNVDTRL ILE QM KVVSILRRNG+MQG+I
Sbjct: 121 IRNEARMDQNVDTRLSILETQMTKVVSILRRNGLMQGNI 151

[Close]

BLAST of Sed0008856 vs. NCBI nr
Match: KAA0067747.1 (hypothetical protein E6C27_scaffold352G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-59
Identity = 123/159 (77.36%), Postives = 138/159 (86.79%), Query Frame = 0


Query: 1   MGKGRVRGTSLGPSSTIVFKSTPRRFTEIEIHDEANIEIDDEPNMEDYQDVDARLSLLEL 60
           MGKGRVRG  LGP+STIVFKSTPR+FTE EIHDE         N+EDYQ+VDARLS+LEL
Sbjct: 13  MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEG--------NLEDYQNVDARLSILEL 72

Query: 61  KMANMLSILEQNGFMQANSATAAHTNGDSPYCVYKNPGRVCSMKIQPTSTQVFRSVSQRN 120
           KMANM+SILEQNGFMQ+N+ T A+TNGD PYC+YKNPGRVCSM++QP STQVFRS+S RN
Sbjct: 73  KMANMISILEQNGFMQSNNPT-ANTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRN 132

Query: 121 IRNEAHMDQNVDTRLLILEVQMNKVVSILRRNGVMQGDI 160
           IRNEA MDQNVDTRL ILE QM KVVSILRRNG+MQG+I
Sbjct: 133 IRNEARMDQNVDTRLSILETQMTKVVSILRRNGLMQGNI 162

[Close]

BLAST of Sed0008856 vs. NCBI nr
Match: TYJ97397.1 (hypothetical protein E5676_scaffold194G002160 [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-59
Identity = 123/159 (77.36%), Postives = 138/159 (86.79%), Query Frame = 0


Query: 1   MGKGRVRGTSLGPSSTIVFKSTPRRFTEIEIHDEANIEIDDEPNMEDYQDVDARLSLLEL 60
           MGKGRVRG  LGP+STIVFKSTPR+FTE EIHDE         N+EDYQ+VDARLS+LEL
Sbjct: 1   MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEG--------NLEDYQNVDARLSILEL 60

Query: 61  KMANMLSILEQNGFMQANSATAAHTNGDSPYCVYKNPGRVCSMKIQPTSTQVFRSVSQRN 120
           KMANM+SILEQNGFMQ+N+ T A+TNGD PYC+YKNPGRVCSM++QP STQVFRS+S RN
Sbjct: 61  KMANMISILEQNGFMQSNNPT-ANTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRN 120

Query: 121 IRNEAHMDQNVDTRLLILEVQMNKVVSILRRNGVMQGDI 160
           IRNEA MDQNVDTRL ILE QM KVVSILRRNG+MQG+I
Sbjct: 121 IRNEARMDQNVDTRLSILETQMTKVVSILRRNGLMQGNI 150

[Close]

BLAST of Sed0008856 vs. NCBI nr
Match: KAG7019185.1 (hypothetical protein SDJN02_18143, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.7 bits (548), Expect = 2.9e-52
Identity = 108/138 (78.26%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 11  LGPSSTIVFKSTPRRFTEIEIHDEANIEIDDEPNMEDYQDVDARLSLLELKMANMLSILE 70
           LGP+ TIVFKSTPR+FTEIEIH+EAN       NMEDY++VDARLS+LELKMANMLSILE
Sbjct: 3   LGPTPTIVFKSTPRQFTEIEIHNEAN-------NMEDYENVDARLSILELKMANMLSILE 62

Query: 71  QNGFMQANSATAAHTNGDSPYCVYKNPGRVCSMKIQPTSTQVFRSVSQRNIRNEAHMDQN 130
           QNGFMQ+N+ TAAHTNGDSPYC+YKNPGRVC MK+QPTSTQVFRS+S RNIRNEA MDQN
Sbjct: 63  QNGFMQSNNLTAAHTNGDSPYCIYKNPGRVCGMKLQPTSTQVFRSISHRNIRNEARMDQN 122

Query: 131 VDTRLLILEVQMNKVVSI 149
           VDTRL ILE QM K + +
Sbjct: 123 VDTRLSILEAQMTKELGV 133

[Close]

BLAST of Sed0008856 vs. NCBI nr
Match: KAG6583423.1 (hypothetical protein SDJN03_19355, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.8 bits (538), Expect = 4.2e-51
Identity = 105/130 (80.77%), Postives = 116/130 (89.23%), Query Frame = 0


Query: 1   MGKGRVRGTSLGPSSTIVFKSTPRRFTEIEIHDEANIEIDDEPNMEDYQDVDARLSLLEL 60
           MGKGRVRG  LGP+ TIVFKSTPR+FTEIEIH+EAN       NMEDY++VDARLS+LEL
Sbjct: 1   MGKGRVRGMKLGPTPTIVFKSTPRQFTEIEIHNEAN-------NMEDYENVDARLSILEL 60

Query: 61  KMANMLSILEQNGFMQANSATAAHTNGDSPYCVYKNPGRVCSMKIQPTSTQVFRSVSQRN 120
           KMANMLSILEQNGFMQ+N+ TAAHTNGDSPYC+YKNPGRVC MK+QPTSTQVFRS+S RN
Sbjct: 61  KMANMLSILEQNGFMQSNNLTAAHTNGDSPYCIYKNPGRVCGMKLQPTSTQVFRSISHRN 120

Query: 121 IRNEAHMDQN 131
           IRNEA MDQN
Sbjct: 121 IRNEARMDQN 123

[Close]

BLAST of Sed0008856 vs. ExPASy TrEMBL
Match: A0A0A0LUW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523050 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.5e-62
Identity = 125/159 (78.62%), Postives = 139/159 (87.42%), Query Frame = 0


Query: 1   MGKGRVRGTSLGPSSTIVFKSTPRRFTEIEIHDEANIEIDDEPNMEDYQDVDARLSLLEL 60
           MGKGRVRG  LGP+STIVFKSTPR+FTE EIHDEA        N+EDYQ+VDARLS+LEL
Sbjct: 1   MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEA--------NLEDYQNVDARLSILEL 60

Query: 61  KMANMLSILEQNGFMQANSATAAHTNGDSPYCVYKNPGRVCSMKIQPTSTQVFRSVSQRN 120
           KMANM+SILEQNGFMQ+N+ TA HTNGD PYC+YKNPGRVCSM++QP STQVFRS+S RN
Sbjct: 61  KMANMISILEQNGFMQSNNPTATHTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRN 120

Query: 121 IRNEAHMDQNVDTRLLILEVQMNKVVSILRRNGVMQGDI 160
           IRNEA MDQNVDTRL ILE QM KVVSILRRNG+MQG+I
Sbjct: 121 IRNEARMDQNVDTRLSILETQMTKVVSILRRNGLMQGNI 151

[Close]

BLAST of Sed0008856 vs. ExPASy TrEMBL
Match: A0A5D3BE38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002160 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 9.1e-60
Identity = 123/159 (77.36%), Postives = 138/159 (86.79%), Query Frame = 0


Query: 1   MGKGRVRGTSLGPSSTIVFKSTPRRFTEIEIHDEANIEIDDEPNMEDYQDVDARLSLLEL 60
           MGKGRVRG  LGP+STIVFKSTPR+FTE EIHDE         N+EDYQ+VDARLS+LEL
Sbjct: 1   MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEG--------NLEDYQNVDARLSILEL 60

Query: 61  KMANMLSILEQNGFMQANSATAAHTNGDSPYCVYKNPGRVCSMKIQPTSTQVFRSVSQRN 120
           KMANM+SILEQNGFMQ+N+ T A+TNGD PYC+YKNPGRVCSM++QP STQVFRS+S RN
Sbjct: 61  KMANMISILEQNGFMQSNNPT-ANTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRN 120

Query: 121 IRNEAHMDQNVDTRLLILEVQMNKVVSILRRNGVMQGDI 160
           IRNEA MDQNVDTRL ILE QM KVVSILRRNG+MQG+I
Sbjct: 121 IRNEARMDQNVDTRLSILETQMTKVVSILRRNGLMQGNI 150

[Close]

BLAST of Sed0008856 vs. ExPASy TrEMBL
Match: A0A5A7VKN2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00670 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 9.1e-60
Identity = 123/159 (77.36%), Postives = 138/159 (86.79%), Query Frame = 0


Query: 1   MGKGRVRGTSLGPSSTIVFKSTPRRFTEIEIHDEANIEIDDEPNMEDYQDVDARLSLLEL 60
           MGKGRVRG  LGP+STIVFKSTPR+FTE EIHDE         N+EDYQ+VDARLS+LEL
Sbjct: 13  MGKGRVRGMKLGPTSTIVFKSTPRQFTEFEIHDEG--------NLEDYQNVDARLSILEL 72

Query: 61  KMANMLSILEQNGFMQANSATAAHTNGDSPYCVYKNPGRVCSMKIQPTSTQVFRSVSQRN 120
           KMANM+SILEQNGFMQ+N+ T A+TNGD PYC+YKNPGRVCSM++QP STQVFRS+S RN
Sbjct: 73  KMANMISILEQNGFMQSNNPT-ANTNGDLPYCIYKNPGRVCSMRLQPASTQVFRSISHRN 132

Query: 121 IRNEAHMDQNVDTRLLILEVQMNKVVSILRRNGVMQGDI 160
           IRNEA MDQNVDTRL ILE QM KVVSILRRNG+MQG+I
Sbjct: 133 IRNEARMDQNVDTRLSILETQMTKVVSILRRNGLMQGNI 162

The following BLAST results are available for this feature:

BLAST of Sed0008856 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65730.1	5.3e-62	78.62	hypothetical protein Csa_019939 [Cucumis sativus]	[more]
KAA0067747.1	1.9e-59	77.36	hypothetical protein E6C27_scaffold352G00670 [Cucumis melo var. makuwa]	[more]
TYJ97397.1	1.9e-59	77.36	hypothetical protein E5676_scaffold194G002160 [Cucumis melo var. makuwa]	[more]
KAG7019185.1	2.9e-52	78.26	hypothetical protein SDJN02_18143, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6583423.1	4.2e-51	80.77	hypothetical protein SDJN03_19355, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0008856 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0008856 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUW6	2.5e-62	78.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523050 PE=4 SV=1	[more]
A0A5D3BE38	9.1e-60	77.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VKN2	9.1e-60	77.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0008856 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008856.1	Sed0008856.1	mRNA
Sed0008856.2	Sed0008856.2	mRNA
Sed0008856.3	Sed0008856.3	mRNA
Sed0008856.4	Sed0008856.4	mRNA