Sed0008799 (gene) Chayote v1

Overview


Name	Sed0008799
Type	gene
Organism	Sechium edule (Chayote v1)
Description	H/ACA ribonucleoprotein complex subunit 4-like
Location	LG04: 26713770 .. 26716188 (+)
RNA-Seq Expression	Sed0008799
Synteny	Sed0008799

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGAAAGGCCGTTTGTCTCTCTTCGTTGTCGCAGCGTTCTGAAGTTCCATGGCGGAAGTTGATATTTCTCGTTCGGAGAAGAAGAAGAAGCACCGGCGAAAGGATGAAGAAGTTTCGCCGGCGGTAGTTTCCGACGAGCCGCCGCAGAAGGACGTTGCCGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTGGACACATCTCAATGGCCTATTCTCCTCAAGAACTACGACCGTCTCAATGTACGTACCGGTCACTACACTCCTCTGCCGTCCGGTTACTCTCCTCTGAAACGGCCTCTTGCTGAGTATATCAGGTATGGTATTCTCAATCTCGATAAACCTGCGAATCCTTCGTCGCATGAGGTTGTAGCTTGGATAAAACGGATTCTTAGAGTTGATAAGACTGGTCATAGTGGTACTTTGGATCCGAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCTACGCGGCTCGTGAAATCGCAGCAGGGTGCGGGTAAGGAGTATGTGTGTATTGCTCGGTTGCATTCGGCTGTGCCGGATGTTGCGAAGGTGGCTCGGGCTTTGGAAACGCTCACTGGAGCTGTGTTTCAGAGGCCGCCTTTGATTTCGGCTGTGAAAAGACAGCTTAGGATAAGGACTATTTATGAGAGTAAACTTCTTGAGTATGATGCTGATAAACATTTAGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGGACGTTGTGTGTGCATTTGGGTCTGATTCTTGGTGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGAGGTCTGGGATTATGGGTGAGAAAGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTTAAGGATGAGAGTTATTTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACTAGCTATAAGAGATTGGTTGTTAAGGATTCTGCTGTTAATGCTATATGTTATGGTGCCAAGTTGATGATTCCAGGGCTGTTGAGATTTGAGAATGATATTGAAGTTGGAGAAGAAATCGTACTCATGACCACAAAGGGTGAAGCTATTGCTCTTGGTATTGCAGAGATGACCACTGCAGTGATGGCAACTTGTGATCATGGCATTGTTGCAAAGATCAAAAGGGTTGTGATGGATAGAGATACCTACCCTAGGAAATGGGGATTGGGTCCTAGGGCATCAATGAAGAAAAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCTACTGGTGGAGATTCTTTGGTTGCAAGCGTTTTTGCTTCCGATACCGCCACTGCGAAGCAGACTGGTGCAGTTGATGAGGAAAAAGAGGGTGGAGGGCAGAAGAGAAAACACGAGGAAGAAACAGAAGCTGCCCTTGCTAAGAAACTGAAAGCTGAAAAGACTGAAGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAGAAGAAAGACAAAGCGAAGGGTGCTGCAGAACTTTCGGAAGAGGAAAATGCCGAAAAATCGGAGAAGAAAAAAAAGAAGAAAGACAAAGATGCAATAGAAGTAGCTATGCCTGAAACAGAGAAGTCCGAGAAGAAAAAGAAAAAGAAAGACAAAGATGCAAAAGAAGCAGGTACACCCGAGACAGAGAAGTCCGAGAAGAAGAAGAAGAAGAAAGATAAGGAATCTATTCAAAATGGTGAAGCAGATGGTCAAGTTGATGCGAGTGAGAAGAAAAAGAAGAAAAAGAAGAACAAAGAAGATGCAGAAGAATAAGACATGGGATCAGATTCTACCTTTTATATGGGTAACTCTTCTTATTGTATTGCCATCAATTCAGTTTCTAGATTTTGCTAGTTCTTTTTATGCATTTCCTGTAGAATTCATGTTTAAACACTTGGGGCTCTATAATATGTATGCTGTTCAATTCTCTACCAAATCTTGCTCATTCCCTTTTGGATTTGTGCTCTCTTGATATATTTATTTTCTCATCTTTTGCAAGCTCGTGGTGATGCTCTGTTTCCTAGAAGTAAGAACATTATGGGGACAATCAAGGATCTGATATTTTAGAATTAGCAAATGTTGGATTATCAAGAAGCTGGATTATGGAGGAATGAATTATAAGAACAATCTCCATGAACACTCAAGCTATTCATTGTTTTTGCTTGTATAATTTGACATGTGAAATTAAGTTTCATTTAATATTTCTTTATTTTGTTTTGCTCATTCCAGATGAGTTTTGTTAGTTTTATTGGTAATGATAGTGATTTTAGTAGAGATGTCCATTTTTGCATGTGGGCGGGAGTCGAGTTTTGTTAGAATGATGTGATAATTTTTTGAGAATGACAGCCAAGATGTATTTTTTCC

mRNA sequence

CTAGAAAGGCCGTTTGTCTCTCTTCGTTGTCGCAGCGTTCTGAAGTTCCATGGCGGAAGTTGATATTTCTCGTTCGGAGAAGAAGAAGAAGCACCGGCGAAAGGATGAAGAAGTTTCGCCGGCGGTAGTTTCCGACGAGCCGCCGCAGAAGGACGTTGCCGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTGGACACATCTCAATGGCCTATTCTCCTCAAGAACTACGACCGTCTCAATGTACGTACCGGTCACTACACTCCTCTGCCGTCCGGTTACTCTCCTCTGAAACGGCCTCTTGCTGAGTATATCAGGTATGGTATTCTCAATCTCGATAAACCTGCGAATCCTTCGTCGCATGAGGTTGTAGCTTGGATAAAACGGATTCTTAGAGTTGATAAGACTGGTCATAGTGGTACTTTGGATCCGAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCTACGCGGCTCGTGAAATCGCAGCAGGGTGCGGGTAAGGAGTATGTGTGTATTGCTCGGTTGCATTCGGCTGTGCCGGATGTTGCGAAGGTGGCTCGGGCTTTGGAAACGCTCACTGGAGCTGTGTTTCAGAGGCCGCCTTTGATTTCGGCTGTGAAAAGACAGCTTAGGATAAGGACTATTTATGAGAGTAAACTTCTTGAGTATGATGCTGATAAACATTTAGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGGACGTTGTGTGTGCATTTGGGTCTGATTCTTGGTGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGAGGTCTGGGATTATGGGTGAGAAAGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTTAAGGATGAGAGTTATTTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACTAGCTATAAGAGATTGGTTGTTAAGGATTCTGCTGTTAATGCTATATGTTATGGTGCCAAGTTGATGATTCCAGGGCTGTTGAGATTTGAGAATGATATTGAAGTTGGAGAAGAAATCGTACTCATGACCACAAAGGGTGAAGCTATTGCTCTTGGTATTGCAGAGATGACCACTGCAGTGATGGCAACTTGTGATCATGGCATTGTTGCAAAGATCAAAAGGGTTGTGATGGATAGAGATACCTACCCTAGGAAATGGGGATTGGGTCCTAGGGCATCAATGAAGAAAAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCTACTGGTGGAGATTCTTTGGTTGCAAGCGTTTTTGCTTCCGATACCGCCACTGCGAAGCAGACTGGTGCAGTTGATGAGGAAAAAGAGGGTGGAGGGCAGAAGAGAAAACACGAGGAAGAAACAGAAGCTGCCCTTGCTAAGAAACTGAAAGCTGAAAAGACTGAAGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAGAAGAAAGACAAAGCGAAGGGTGCTGCAGAACTTTCGGAAGAGGAAAATGCCGAAAAATCGGAGAAGAAAAAAAAGAAGAAAGACAAAGATGCAATAGAAGTAGCTATGCCTGAAACAGAGAAGTCCGAGAAGAAAAAGAAAAAGAAAGACAAAGATGCAAAAGAAGCAGGTACACCCGAGACAGAGAAGTCCGAGAAGAAGAAGAAGAAGAAAGATAAGGAATCTATTCAAAATGGTGAAGCAGATGGTCAAGTTGATGCGAGTGAGAAGAAAAAGAAGAAAAAGAAGAACAAAGAAGATGCAGAAGAATAAGACATGGGATCAGATTCTACCTTTTATATGGCTCGTGGTGATGCTCTGTTTCCTAGAAGTAAGAACATTATGGGGACAATCAAGGATCTGATATTTTAGAATTAGCAAATGTTGGATTATCAAGAAGCTGGATTATGGAGGAATGAATTATAAGAACAATCTCCATGAACACTCAAGCTATTCATTGTTTTTGCTTGTATAATTTGACATGTGAAATTAAGTTTCATTTAATATTTCTTTATTTTGTTTTGCTCATTCCAGATGAGTTTTGTTAGTTTTATTGGTAATGATAGTGATTTTAGTAGAGATGTCCATTTTTGCATGTGGGCGGGAGTCGAGTTTTGTTAGAATGATGTGATAATTTTTTGAGAATGACAGCCAAGATGTATTTTTTCC

Coding sequence (CDS)

ATGGCGGAAGTTGATATTTCTCGTTCGGAGAAGAAGAAGAAGCACCGGCGAAAGGATGAAGAAGTTTCGCCGGCGGTAGTTTCCGACGAGCCGCCGCAGAAGGACGTTGCCGACTTTATGATCAAGCCTCAAAGTTTTACTCCTCCGGTGGACACATCTCAATGGCCTATTCTCCTCAAGAACTACGACCGTCTCAATGTACGTACCGGTCACTACACTCCTCTGCCGTCCGGTTACTCTCCTCTGAAACGGCCTCTTGCTGAGTATATCAGGTATGGTATTCTCAATCTCGATAAACCTGCGAATCCTTCGTCGCATGAGGTTGTAGCTTGGATAAAACGGATTCTTAGAGTTGATAAGACTGGTCATAGTGGTACTTTGGATCCGAAGGTTACTGGTAATTTGATTGTGTGCATTGATCGAGCTACGCGGCTCGTGAAATCGCAGCAGGGTGCGGGTAAGGAGTATGTGTGTATTGCTCGGTTGCATTCGGCTGTGCCGGATGTTGCGAAGGTGGCTCGGGCTTTGGAAACGCTCACTGGAGCTGTGTTTCAGAGGCCGCCTTTGATTTCGGCTGTGAAAAGACAGCTTAGGATAAGGACTATTTATGAGAGTAAACTTCTTGAGTATGATGCTGATAAACATTTAGTTGTGTTTTGGATTTCTTGTGAAGCTGGAACTTATGTTAGGACGTTGTGTGTGCATTTGGGTCTGATTCTTGGTGTTGGAGGGCATATGCAAGAACTTAGGAGGGTGAGGTCTGGGATTATGGGTGAGAAAGATAACATGGTTACAATGCATGATGTTATGGATGCTCAATGGGTTTATGATAATTTTAAGGATGAGAGTTATTTGAGGAGGGTAATTATGCCTCTTGAGGTGGTTTTGACTAGCTATAAGAGATTGGTTGTTAAGGATTCTGCTGTTAATGCTATATGTTATGGTGCCAAGTTGATGATTCCAGGGCTGTTGAGATTTGAGAATGATATTGAAGTTGGAGAAGAAATCGTACTCATGACCACAAAGGGTGAAGCTATTGCTCTTGGTATTGCAGAGATGACCACTGCAGTGATGGCAACTTGTGATCATGGCATTGTTGCAAAGATCAAAAGGGTTGTGATGGATAGAGATACCTACCCTAGGAAATGGGGATTGGGTCCTAGGGCATCAATGAAGAAAAAGCTTATTGGAGAAGGGAAGTTGGATAAGCATGGAAAACCAAATGAGAACACTCCTCAGGAATGGATGAGGAATTTGGTTTTACCTACTGGTGGAGATTCTTTGGTTGCAAGCGTTTTTGCTTCCGATACCGCCACTGCGAAGCAGACTGGTGCAGTTGATGAGGAAAAAGAGGGTGGAGGGCAGAAGAGAAAACACGAGGAAGAAACAGAAGCTGCCCTTGCTAAGAAACTGAAAGCTGAAAAGACTGAAGAAGTTGAAGAAGTCGGGAAGAAAGAAAAGAAGAAGAAGAAAGACAAAGCGAAGGGTGCTGCAGAACTTTCGGAAGAGGAAAATGCCGAAAAATCGGAGAAGAAAAAAAAGAAGAAAGACAAAGATGCAATAGAAGTAGCTATGCCTGAAACAGAGAAGTCCGAGAAGAAAAAGAAAAAGAAAGACAAAGATGCAAAAGAAGCAGGTACACCCGAGACAGAGAAGTCCGAGAAGAAGAAGAAGAAGAAAGATAAGGAATCTATTCAAAATGGTGAAGCAGATGGTCAAGTTGATGCGAGTGAGAAGAAAAAGAAGAAAAAGAAGAACAAAGAAGATGCAGAAGAATAA

Protein sequence

MAEVDISRSEKKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAALAKKLKAEKTEEVEEVGKKEKKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKKKKKKDKDAKEAGTPETEKSEKKKKKKDKESIQNGEADGQVDASEKKKKKKKNKEDAEE

Homology

[Close]

BLAST of Sed0008799 vs. NCBI nr
Match: XP_023539854.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 956.1 bits (2470), Expect = 1.5e-274
Identity = 524/603 (86.90%), Postives = 546/603 (90.55%), Query Frame = 0


Query: 1   MAEVDISRSE-KKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILL 60
           M++V+ISRSE KKKKHR KDEEVSP V SDE P KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGI+GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEE+VLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAAL-AKKLKAEKTEE 480
           VLPTGGDSLVASVFASDTAT KQ+ A DEEK+G G+KRKH+EE EAA  AKKLK EK EE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGLGRKRKHDEEAEAAAPAKKLKGEKVEE 480

Query: 481 VEEV---GKKE-KKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKK 540
            EEV   GKKE KKKKKDK KG  E S++E AEKSEKKKKKK+KDA E            
Sbjct: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKEKDAKE------------ 540

Query: 541 KKKKDKDAKEAGTPETEKSEKKKKKKDKES---IQNGEADGQVD--ASEKKKKKKKNKED 593
                    EAGTPETEKSEKKKKKKDKES    QNGEAD  VD  + +KKKKKKKNKE+
Sbjct: 541 ---------EAGTPETEKSEKKKKKKDKESGNDTQNGEADDDVDGGSEKKKKKKKKNKEE 582

[Close]

BLAST of Sed0008799 vs. NCBI nr
Match: XP_022941699.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata] >KAG6596411.1 H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 956.1 bits (2470), Expect = 1.5e-274
Identity = 525/604 (86.92%), Postives = 548/604 (90.73%), Query Frame = 0


Query: 1   MAEVDISRSE-KKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILL 60
           M++V+ISRSE KKKKHR KDEEVSP V SDE P KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGI+GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEE+VLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAAL-AKKLKAEKTEE 480
           VLPTGGDSLVASVFASDTAT KQ+ A DEEK+G G+KRKH+EETEAA  AKKLK EK EE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEE 480

Query: 481 VEEV---GKKE-KKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKK 540
            EE+   GKKE KKKKKDK KG  E S++E AEKSEKKKKKKDKDA E            
Sbjct: 481 AEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKE------------ 540

Query: 541 KKKKDKDAKEAGTPETEKSE-KKKKKKDKES---IQNGEADGQVD--ASEKKKKKKKNKE 593
                    EAGTPETEKSE KKKKKKDKES    QNGEA+G VD  + +KKKKKKKNKE
Sbjct: 541 ---------EAGTPETEKSEKKKKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNKE 583

[Close]

BLAST of Sed0008799 vs. NCBI nr
Match: KAG7027955.1 (H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 954.5 bits (2466), Expect = 4.2e-274
Identity = 524/604 (86.75%), Postives = 547/604 (90.56%), Query Frame = 0


Query: 1   MAEVDISRSE-KKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILL 60
           M++V+ISRSE KKKKHR KDEEVSP V SDE P KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGI+GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEE+VLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAAL-AKKLKAEKTEE 480
           VLPTGGDSLVASVFASDT T KQ+ A DEEK+G G+KRKH+EETEAA  AKKLK EK EE
Sbjct: 421 VLPTGGDSLVASVFASDTTTPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEE 480

Query: 481 VEEV---GKKE-KKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKK 540
            EE+   GKKE KKKKKDK KG  E S++E AEKSEKKKKKKDKDA E            
Sbjct: 481 AEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKE------------ 540

Query: 541 KKKKDKDAKEAGTPETEKSE-KKKKKKDKES---IQNGEADGQVD--ASEKKKKKKKNKE 593
                    EAGTPETEKSE KKKKKKDKES    QNGEA+G VD  + +KKKKKKKNKE
Sbjct: 541 ---------EAGTPETEKSEKKKKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNKE 583

[Close]

BLAST of Sed0008799 vs. NCBI nr
Match: XP_022971402.1 (H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima])

HSP 1 Score: 951.8 bits (2459), Expect = 2.8e-273
Identity = 523/600 (87.17%), Postives = 540/600 (90.00%), Query Frame = 0


Query: 1   MAEVDISRSE-KKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILL 60
           M++V+ISRSE KKKKHR KDEEVSP V SDE P KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGI+GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEE+VLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAAL-AKKLKAEKTEE 480
           VLPTGGDSLVASVFASDTAT KQ  A DEEK+G GQKRKH+EETEAA  AKKLK EK EE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480

Query: 481 VEEV---GKKE-KKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKK 540
            EEV   GKKE KKKKKDK KG  E S++E A                      EK EKK
Sbjct: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKA----------------------EKPEKK 540

Query: 541 KKKKDKDAKEAGTPETEKSE-KKKKKKDKES---IQNGEADGQVDASEKKKKKKKNKEDA 591
           KKKKDKDAKEAGTPETEKSE KKKKKKDKES    QNGEADG VD     +KKKKNKE+A
Sbjct: 541 KKKKDKDAKEAGTPETEKSEKKKKKKKDKESGNDTQNGEADGHVDGG--SEKKKKNKEEA 576

[Close]

BLAST of Sed0008799 vs. NCBI nr
Match: XP_022145634.1 (H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia])

HSP 1 Score: 948.7 bits (2451), Expect = 2.3e-272
Identity = 521/607 (85.83%), Postives = 542/607 (89.29%), Query Frame = 0


Query: 1   MAEVDISRSE-KKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILL 60
           M+EV+ISRSE KKKKHR KDE+VSPAV SDE PQKD ADFMIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHS+VPDVAKV+RALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGI+GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEE+VLMTTKGEAIALGIAEMTTAVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAALAKKL---KAEKT 480
           VLPTGGDSLVAS FA+D A     G  + EK+GGG+KRK +E+ EAA  KKL   KAE+ 
Sbjct: 421 VLPTGGDSLVASHFAADAA---DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEA 480

Query: 481 EEVEEVGKKE-KKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKKK 540
           EEV+EVGKKE KKKKKDK KG  E ++EEN                       EKSEKKK
Sbjct: 481 EEVDEVGKKEKKKKKKDKEKGNVEPADEEN----------------------VEKSEKKK 540

Query: 541 KKKDKDAKEAGTPETEKSEKKKKKKDKES----------IQNGEADGQVDASEKKKKKKK 593
           KKKDK+AKEAGTPETEKSEKKKKKKDKES          IQNGEADG VD SEKKKKKKK
Sbjct: 541 KKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQNGEADGHVDGSEKKKKKKK 582

[Close]

BLAST of Sed0008799 vs. ExPASy Swiss-Prot
Match: Q9LD90 (H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF5 PE=1 SV=1)

HSP 1 Score: 779.2 bits (2011), Expect = 3.2e-224
Identity = 434/604 (71.85%), Postives = 489/604 (80.96%), Query Frame = 0


Query: 1   MAEVDISRSEKKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILLK 60
           MAEVDIS S+KKK+ + +++              D  D+MIKPQSFTP +DTSQWPILLK
Sbjct: 1   MAEVDISHSKKKKQDKTENDAA------------DTGDYMIKPQSFTPAIDTSQWPILLK 60

Query: 61  NYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDK 120
           NYDRLNVRTGHYTP+ +G+SPLKRPL EYIRYG++NLDKPANPSSHEVVAWIKRILRV+K
Sbjct: 61  NYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEK 120

Query: 121 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLT 180
           TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALE+LT
Sbjct: 121 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLT 180

Query: 181 GAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLIL 240
           GAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+L
Sbjct: 181 GAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLL 240

Query: 241 GVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYK 300
           GVGGHMQELRRVRSGI+GE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTSYK
Sbjct: 241 GVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYK 300

Query: 301 RLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMAT 360
           RLVVKDSAVNAICYGAKLMIPGLLRFENDI+VG E+VLMTTKGEAIA+GIAEMTT+VMAT
Sbjct: 301 RLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMAT 360

Query: 361 CDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLV 420
           CDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+V
Sbjct: 361 CDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVV 420

Query: 421 LPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAALAKKLKAEKTEEV- 480
           LPTGGD+++A   A   A  +     +  + G  +KRKH++ +++      K  KT+EV 
Sbjct: 421 LPTGGDAIIAGAAA---APEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKEVE 480

Query: 481 -----EEVGKKEKKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAI--EVAMPETEKSE 540
                E+V   +KKKKKDK +   E  EE  +EK EKKKKK  K+ +  EVA P   KSE
Sbjct: 481 GEEAEEKVKSSKKKKKKDKEE---EKEEEAGSEKKEKKKKKDKKEEVIEEVASP---KSE 540

Query: 541 KKKKKKDKDAKEAGTPE----TEKSEKKKKKKDKESIQNGEADGQVDASEKKKKKKKNKE 593
           KKKKKK KD + A   E     EKSEKKKKKKD                  KKKK K+ E
Sbjct: 541 KKKKKKSKDTEAAVDAEDESAAEKSEKKKKKKD------------------KKKKNKDSE 565

[Close]

BLAST of Sed0008799 vs. ExPASy Swiss-Prot
Match: Q5ZJH9 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1)

HSP 1 Score: 618.2 bits (1593), Expect = 9.5e-176
Identity = 337/517 (65.18%), Postives = 403/517 (77.95%), Query Frame = 0


Query: 13  KKHRRKDEEVSPAVVSDEPPQKDVAD------FMIKPQSFTPPVDTSQWPILLKNYDRLN 72
           KK R+KD+           P +DVAD      F+IKP+S    +DTSQWP+LLKN+D+LN
Sbjct: 10  KKRRKKDKR--------SLPDEDVADIQHTEEFLIKPESRVAQLDTSQWPLLLKNFDKLN 69

Query: 73  VRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGT 132
           V T HYTPLPSG +PLKR +++Y+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGT
Sbjct: 70  VLTTHYTPLPSGANPLKREISDYVRSGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGT 129

Query: 133 LDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQR 192
           LDPKVTG LIVCI+RATRLVKSQQ AGKEYV I RLH+A+   A++ARA+ETLTGA+FQR
Sbjct: 130 LDPKVTGCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIESEAQLARAIETLTGALFQR 189

Query: 193 PPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHM 252
           PPLI+AVKRQLR+RTIYESKL+EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG M
Sbjct: 190 PPLIAAVKRQLRVRTIYESKLVEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQM 249

Query: 253 QELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKD 312
           QELRRVRSGI+GE DNMVTMHDV+DAQW YDN KD+SYLRRVI+PLE +LTS+KRLV+KD
Sbjct: 250 QELRRVRSGILGEMDNMVTMHDVLDAQWQYDNNKDDSYLRRVILPLEKLLTSHKRLVMKD 309

Query: 313 SAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMATCDHGIV 372
           SAVNAICYGAK+M+PG+LR+E+ IE+ +EIV++TTKGEAI L IA MTTAV++TCDHG+V
Sbjct: 310 SAVNAICYGAKIMLPGVLRYEDGIELKQEIVVITTKGEAICLAIALMTTAVISTCDHGVV 369

Query: 373 AKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGD 432
           AKIKRV+M+RDTYPRKWGLGP+AS KK +I +G LDKHGKPNE TP  W +         
Sbjct: 370 AKIKRVIMERDTYPRKWGLGPKASQKKMMIQKGLLDKHGKPNECTPDSWKK--------- 429

Query: 433 SLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAALAKKLKAEKTEEVEEVGKKE 492
             V    +S    AK   AV E +    +KR+ E E EA       A  T   EE+ KKE
Sbjct: 430 EYVDYRESSKKEAAKVPQAVSEVERAPKRKRESESENEAVSPPPSPA--TPPPEELSKKE 489

Query: 493 KKKKK--DKAKGAAELSEEE---NAEKSEKKKKKKDK 519
           KKKKK   KAK AAE  EE+    +E S KKKKKK K
Sbjct: 490 KKKKKKEKKAKEAAESGEEQVEVISESSAKKKKKKKK 507

[Close]

BLAST of Sed0008799 vs. ExPASy Swiss-Prot
Match: P40615 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 610.9 bits (1574), Expect = 1.5e-173
Identity = 317/514 (61.67%), Postives = 401/514 (78.02%), Query Frame = 0


Query: 13  KKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 72
           KKH++K E   P   +D    +   DF+IKP+S    +DTSQWP+LLKN+DRLNVRT HY
Sbjct: 12  KKHKKKKER-KPLPEADVAEIQHAEDFLIKPESKAAQLDTSQWPLLLKNFDRLNVRTTHY 71

Query: 73  TPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVT 132
           TP+P G +PLKR + EY+R G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVT
Sbjct: 72  TPIPCGSNPLKREIGEYVRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVT 131

Query: 133 GNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISA 192
           G LIVCI+RATRLVKSQQ AGKEYV + RLH+A+   A+++RALETLTGA+FQRPPLI+A
Sbjct: 132 GCLIVCIERATRLVKSQQSAGKEYVGVVRLHNAIEGTAQLSRALETLTGALFQRPPLIAA 191

Query: 193 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 252
           VKRQLR+RTIYES+++EYD ++ L VFW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRV
Sbjct: 192 VKRQLRVRTIYESRVVEYDPERRLGVFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRV 251

Query: 253 RSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAI 312
           RSG++GE+D+MVTMHDV+DAQ++YD+ +DESYLRRV+ PLE +LTS+KRLV+KDSAVNAI
Sbjct: 252 RSGVVGERDHMVTMHDVLDAQYLYDHHRDESYLRRVVFPLEKLLTSHKRLVMKDSAVNAI 311

Query: 313 CYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRV 372
           CYGAK+M+PGLLR+E+ IEV +E+V++TTKGEA+ + IA MTTAV++TCDHG+VAKIKRV
Sbjct: 312 CYGAKIMLPGLLRYEDGIEVNQEVVVITTKGEAVCVAIALMTTAVISTCDHGVVAKIKRV 371

Query: 373 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLV--LPTGGDSLVA 432
           +M+RDTYPRKWGLGP+AS KK+LI +G LDKHG+P + TP  W R+ V    +   +  A
Sbjct: 372 IMERDTYPRKWGLGPKASQKKQLIKQGLLDKHGRPTDGTPASWTRDYVDYSDSSKKATAA 431

Query: 433 SVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAALAKKLKAEKTEEVEEVGKKEKKKK 492
                   TA     V         KRK + +++A        E T       KKEKKKK
Sbjct: 432 EATPGPGVTADAASIV---------KRKRDSDSDA-------DEATPTTTPRVKKEKKKK 491

Query: 493 KDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVA 525
           K+KA G  E +E+ + + + KKKKKK + A E++
Sbjct: 492 KEKADGGEEAAEDGDGDATRKKKKKKARAAEELS 508

[Close]

BLAST of Sed0008799 vs. ExPASy Swiss-Prot
Match: Q54T81 (Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=nola4 PE=1 SV=1)

HSP 1 Score: 606.7 bits (1563), Expect = 2.8e-172
Identity = 337/573 (58.81%), Postives = 425/573 (74.17%), Query Frame = 0


Query: 13  KKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 72
           KK + K  E S   V            +IKP+  TP +DTS+WP+LLKNYD+L+VRTGHY
Sbjct: 5   KKSKSKSSEKSTQEVEQ----------VIKPEK-TPILDTSKWPLLLKNYDQLSVRTGHY 64

Query: 73  TPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVT 132
           TP+P+G+SPLKRP+ EY++YGI+NLDKP+NPSSHEVVAWI+ ILRV KTGHSGTLDPKVT
Sbjct: 65  TPIPNGHSPLKRPIKEYVKYGIINLDKPSNPSSHEVVAWIRTILRVTKTGHSGTLDPKVT 124

Query: 133 GNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISA 192
           G LIVCI+RATRLVKSQQGAGKEY+ I RLH A+    ++++A++TLTGA+FQRPP  SA
Sbjct: 125 GCLIVCIERATRLVKSQQGAGKEYIGIVRLHGAIEGTTELSKAVDTLTGALFQRPPQKSA 184

Query: 193 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 252
           VK++LR+RTI+ SKLLE+D +++L + W+ CEAGTY+RTLCVH+GL++GVGGHMQELRRV
Sbjct: 185 VKKRLRVRTIHNSKLLEFDPERNLGLIWVDCEAGTYIRTLCVHIGLLMGVGGHMQELRRV 244

Query: 253 RSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAI 312
           RSGIM EK   VTMHDV DAQ+ YDN KDESYLRRVI PLE +LT+YKR+VVKDSA+NAI
Sbjct: 245 RSGIMSEKKGQVTMHDVKDAQYEYDNSKDESYLRRVIQPLEAILTNYKRIVVKDSAINAI 304

Query: 313 CYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRV 372
           CYGAKLMIPGLLR+E DIE  EE+VL+TTKGEAIA+GIA+MTTA MATCDHG+VA IKRV
Sbjct: 305 CYGAKLMIPGLLRYEQDIESNEEVVLITTKGEAIAIGIAQMTTASMATCDHGVVATIKRV 364

Query: 373 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLVLPTGGDSLVASV 432
           +MDRD YP +WGLGP+A +KK++I +GKLDK GKPNE TP +W       TG       V
Sbjct: 365 IMDRDVYPVRWGLGPKAKVKKEMIKDGKLDKFGKPNEKTPSDWTNTYTYYTG------QV 424

Query: 433 FASDTATAKQTGAVDEEKEGGGQKRKHEEETEAALAKKLKAEKTEEVEEVGKKEKKKKKD 492
             + T +  ++  VD  K           +  A++A K + E +E+ + V KKEKK KK+
Sbjct: 425 ATTTTTSPVESMNVDTPK-----------KATASVAVKAEVESSEDEKPVPKKEKKDKKE 484

Query: 493 KAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKKKKKKDKDAKEAGTPETEK 552
           K K +++  +E   EKS KK KK+ K          EK EKK+KK  KD  +  + + EK
Sbjct: 485 KKKDSSD--DESEEEKSSKKDKKEKK----------EKKEKKEKKSSKDDSDDESSKKEK 537

Query: 553 SEKKKKK-KDKESIQNGEADGQVDASEKKKKKK 585
            +KK+KK  DK+S    E+  + D  +KK+KKK
Sbjct: 545 KDKKRKKSSDKDSDSEKESSDKKDKKDKKEKKK 537

[Close]

BLAST of Sed0008799 vs. ExPASy Swiss-Prot
Match: Q9ESX5 (H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4)

HSP 1 Score: 606.7 bits (1563), Expect = 2.8e-172
Identity = 320/519 (61.66%), Postives = 403/519 (77.65%), Query Frame = 0


Query: 13  KKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILLKNYDRLNVRTGHY 72
           KKH++K +   P    D    +   +F+IKP+S    +DTSQWP+LLKN+D+LNVRT HY
Sbjct: 11  KKHKKKKDR-KPLQEDDVAEIQHAEEFLIKPESKVAQLDTSQWPLLLKNFDKLNVRTAHY 70

Query: 73  TPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVT 132
           TPLP G +PLKR + +YIR G +NLDKP+NPSSHEVVAWI+RILRV+KTGHSGTLDPKVT
Sbjct: 71  TPLPCGSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVT 130

Query: 133 GNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISA 192
           G LIVCI+RATRLVKSQQ AGKEYV I RLH+A+    +++RALETLTGA+FQRPPLI+A
Sbjct: 131 GCLIVCIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAA 190

Query: 193 VKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRV 252
           VKRQLR+RTIYESK++EYD ++ L +FW+SCEAGTY+RTLCVHLGL+LGVGG MQELRRV
Sbjct: 191 VKRQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLLLGVGGQMQELRRV 250

Query: 253 RSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAI 312
           RSG+M EKD+MVTMHDV+DAQW+YDN KDESYLRRV+ PLE +LTS+KRLV+KDSAVNAI
Sbjct: 251 RSGVMSEKDHMVTMHDVLDAQWLYDNHKDESYLRRVVYPLEKLLTSHKRLVMKDSAVNAI 310

Query: 313 CYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRV 372
           CYGAK+M+PGLLR+E+ IEV +EIV++TTKGEAI + IA MTTAV++TCDHGIVAKIKRV
Sbjct: 311 CYGAKIMLPGLLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAVISTCDHGIVAKIKRV 370

Query: 373 VMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLV--LPTGGDSLVA 432
           +M+RDTYPRKWGLGP+AS KK +I +G LDKHGKP +NTP  W ++ +    +G ++LV 
Sbjct: 371 IMERDTYPRKWGLGPKASQKKMMIKQGLLDKHGKPTDNTPATWKQDYIDYSDSGKNTLVT 430

Query: 433 SVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAALAKKLKAEKTEEVEEVGKKEKKKK 492
               +    A+    +         KRK + E+E        +++T  V ++  KEKKKK
Sbjct: 431 EAVQAPQLAAEAVNVI---------KRKRDSESE--------SDETPTVPQL--KEKKKK 490

Query: 493 KDK-----AKGAAELSEEENAEKSEKKKKKKDKDAIEVA 525
           KDK      +   E  + +N + ++KKKKKK K   E++
Sbjct: 491 KDKKPKTVLESGGETGDGDN-DTTKKKKKKKVKVVEEMS 508

[Close]

BLAST of Sed0008799 vs. ExPASy TrEMBL
Match: A0A6J1FP65 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446978 PE=3 SV=1)

HSP 1 Score: 956.1 bits (2470), Expect = 7.1e-275
Identity = 525/604 (86.92%), Postives = 548/604 (90.73%), Query Frame = 0


Query: 1   MAEVDISRSE-KKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILL 60
           M++V+ISRSE KKKKHR KDEEVSP V SDE P KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVGSDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGI+GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEE+VLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAAL-AKKLKAEKTEE 480
           VLPTGGDSLVASVFASDTAT KQ+ A DEEK+G G+KRKH+EETEAA  AKKLK EK EE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQSVAADEEKDGVGRKRKHDEETEAAAPAKKLKGEKVEE 480

Query: 481 VEEV---GKKE-KKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKK 540
            EE+   GKKE KKKKKDK KG  E S++E AEKSEKKKKKKDKDA E            
Sbjct: 481 AEEIEESGKKEKKKKKKDKEKGGIEASDDEKAEKSEKKKKKKDKDAKE------------ 540

Query: 541 KKKKDKDAKEAGTPETEKSE-KKKKKKDKES---IQNGEADGQVD--ASEKKKKKKKNKE 593
                    EAGTPETEKSE KKKKKKDKES    QNGEA+G VD  + +KKKKKKKNKE
Sbjct: 541 ---------EAGTPETEKSEKKKKKKKDKESGNDTQNGEAEGHVDGGSEKKKKKKKKNKE 583

[Close]

BLAST of Sed0008799 vs. ExPASy TrEMBL
Match: A0A6J1I1U9 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470135 PE=3 SV=1)

HSP 1 Score: 951.8 bits (2459), Expect = 1.3e-273
Identity = 523/600 (87.17%), Postives = 540/600 (90.00%), Query Frame = 0


Query: 1   MAEVDISRSE-KKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILL 60
           M++V+ISRSE KKKKHR KDEEVSP V SDE P KDVADF+IKPQSFTPPVDTSQWPILL
Sbjct: 1   MSDVEISRSEKKKKKHRSKDEEVSPVVASDEQPLKDVADFLIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPL +YIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLIDYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGI+GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEE+VLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAAL-AKKLKAEKTEE 480
           VLPTGGDSLVASVFASDTAT KQ  A DEEK+G GQKRKH+EETEAA  AKKLK EK EE
Sbjct: 421 VLPTGGDSLVASVFASDTATPKQNVAADEEKDGVGQKRKHDEETEAAAPAKKLKGEKAEE 480

Query: 481 VEEV---GKKE-KKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKK 540
            EEV   GKKE KKKKKDK KG  E S++E A                      EK EKK
Sbjct: 481 AEEVEESGKKEKKKKKKDKEKGGIEASDDEKA----------------------EKPEKK 540

Query: 541 KKKKDKDAKEAGTPETEKSE-KKKKKKDKES---IQNGEADGQVDASEKKKKKKKNKEDA 591
           KKKKDKDAKEAGTPETEKSE KKKKKKDKES    QNGEADG VD     +KKKKNKE+A
Sbjct: 541 KKKKDKDAKEAGTPETEKSEKKKKKKKDKESGNDTQNGEADGHVDGG--SEKKKKNKEEA 576

[Close]

BLAST of Sed0008799 vs. ExPASy TrEMBL
Match: A0A6J1CVU2 (H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC111015035 PE=3 SV=1)

HSP 1 Score: 948.7 bits (2451), Expect = 1.1e-272
Identity = 521/607 (85.83%), Postives = 542/607 (89.29%), Query Frame = 0


Query: 1   MAEVDISRSE-KKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILL 60
           M+EV+ISRSE KKKKHR KDE+VSPAV SDE PQKD ADFMIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSEVEISRSEKKKKKHRSKDEDVSPAVGSDEQPQKDAADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD
Sbjct: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHS+VPDVAKV+RALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSSVPDVAKVSRALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDA+KHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDAEKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGI+GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEE+VLMTTKGEAIALGIAEMTTAVMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNL 420
           TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEW+RNL
Sbjct: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWLRNL 420

Query: 421 VLPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAALAKKL---KAEKT 480
           VLPTGGDSLVAS FA+D A     G  + EK+GGG+KRK +E+ EAA  KKL   KAE+ 
Sbjct: 421 VLPTGGDSLVASHFAADAA---DEGKQETEKDGGGRKRKLDEDMEAAPTKKLKTEKAEEA 480

Query: 481 EEVEEVGKKE-KKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKKK 540
           EEV+EVGKKE KKKKKDK KG  E ++EEN                       EKSEKKK
Sbjct: 481 EEVDEVGKKEKKKKKKDKEKGNVEPADEEN----------------------VEKSEKKK 540

Query: 541 KKKDKDAKEAGTPETEKSEKKKKKKDKES----------IQNGEADGQVDASEKKKKKKK 593
           KKKDK+AKEAGTPETEKSEKKKKKKDKES          IQNGEADG VD SEKKKKKKK
Sbjct: 541 KKKDKEAKEAGTPETEKSEKKKKKKDKESGNDHSQSPAGIQNGEADGHVDGSEKKKKKKK 582

[Close]

BLAST of Sed0008799 vs. ExPASy TrEMBL
Match: A0A6J1F3Q2 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=LOC111441884 PE=3 SV=1)

HSP 1 Score: 943.0 bits (2436), Expect = 6.2e-271
Identity = 520/603 (86.24%), Postives = 545/603 (90.38%), Query Frame = 0


Query: 1   MAEVDISRSE-KKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILL 60
           M+ V+ISRSE KKKKHR KD+EVSPAV SDE P KDVADFMIKPQSFTPPVDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPPVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDV+KVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGI+GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEE+VLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EWMRNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAALAKKLKAEKT--- 480
           VLPTGGDSLVASVFASD+AT  + G  + EK+GGG+KRK +EETEAA AKKLKAEKT   
Sbjct: 421 VLPTGGDSLVASVFASDSATVDE-GKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDA 480

Query: 481 EEVEEVGKKE-KKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKKK 540
           EEVEE GKKE KKKKKDK KG+ E S+EEN                      T + EKKK
Sbjct: 481 EEVEEGGKKEKKKKKKDKEKGSGEPSDEEN----------------------TVRLEKKK 540

Query: 541 KKKDKDAKEAGTP-ETEKSEKKKKKKDKES----IQNGEADGQVDASE-KKKKKKKNKED 593
           KKKDK+ KEAGTP ET+KSEKKKKKKDKES    +QNGEAD  VD SE KKKKKKKNKED
Sbjct: 541 KKKDKEGKEAGTPEETQKSEKKKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKED 580

[Close]

BLAST of Sed0008799 vs. ExPASy TrEMBL
Match: A0A6J1J6M3 (H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111481852 PE=3 SV=1)

HSP 1 Score: 937.2 bits (2421), Expect = 3.4e-269
Identity = 517/604 (85.60%), Postives = 543/604 (89.90%), Query Frame = 0


Query: 1   MAEVDISRSE-KKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILL 60
           M+ V+ISRSE KKKKHR KD+EVSPAV SDE P KDVADFMIKPQSFTP VDTSQWPILL
Sbjct: 1   MSGVEISRSEKKKKKHRSKDDEVSPAVGSDEQPPKDVADFMIKPQSFTPSVDTSQWPILL 60

Query: 61  KNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVD 120
           KNYDRLNVRTGHYTPLPSG+SPLKRPLA+YIRYGILNLDKPANPSSHEVVAWIKRILRV+
Sbjct: 61  KNYDRLNVRTGHYTPLPSGFSPLKRPLADYIRYGILNLDKPANPSSHEVVAWIKRILRVE 120

Query: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETL 180
           KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHS+VPDV+KVARALETL
Sbjct: 121 KTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETL 180

Query: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240
           TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI
Sbjct: 181 TGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLI 240

Query: 241 LGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300
           LGVGGHMQELRRVRSGI+GEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY
Sbjct: 241 LGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSY 300

Query: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMA 360
           KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEE+VLMTTKGEAIALGIAEMTT+VMA
Sbjct: 301 KRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTSVMA 360

Query: 361 TCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNL 420
           TCDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNE TP EWMRNL
Sbjct: 361 TCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNEKTPSEWMRNL 420

Query: 421 VLPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAALAKKLKAEKT--- 480
           VLPTGGDSLVASVFA+D+AT  + G  + EK+GGG+KRK +EETEAA AKKLKAEKT   
Sbjct: 421 VLPTGGDSLVASVFATDSATVDE-GKQETEKDGGGRKRKLDEETEAAPAKKLKAEKTEDA 480

Query: 481 EEVEEVGKKE--KKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAIEVAMPETEKSEKK 540
           EEVEE GKKE  KKKKKDK KG+ E S+EEN E+SE                       K
Sbjct: 481 EEVEEGGKKEKKKKKKKDKEKGSGEPSDEENTEQSE-----------------------K 540

Query: 541 KKKKDKDAKEAGTP-ETEKSEKKKKKKDKES----IQNGEADGQVDASE-KKKKKKKNKE 593
           KKKKDK+ KEAGTP E +KSEKKKKKKDKES    +QNGEAD  VD SE KKKKKKKNKE
Sbjct: 541 KKKKDKEGKEAGTPEEKQKSEKKKKKKDKESGVGDVQNGEADDHVDGSEKKKKKKKKNKE 580

[Close]

BLAST of Sed0008799 vs. TAIR 10
Match: AT3G57150.1 (homologue of NAP57 )

HSP 1 Score: 779.2 bits (2011), Expect = 2.3e-225
Identity = 434/604 (71.85%), Postives = 489/604 (80.96%), Query Frame = 0


Query: 1   MAEVDISRSEKKKKHRRKDEEVSPAVVSDEPPQKDVADFMIKPQSFTPPVDTSQWPILLK 60
           MAEVDIS S+KKK+ + +++              D  D+MIKPQSFTP +DTSQWPILLK
Sbjct: 1   MAEVDISHSKKKKQDKTENDAA------------DTGDYMIKPQSFTPAIDTSQWPILLK 60

Query: 61  NYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVDK 120
           NYDRLNVRTGHYTP+ +G+SPLKRPL EYIRYG++NLDKPANPSSHEVVAWIKRILRV+K
Sbjct: 61  NYDRLNVRTGHYTPISAGHSPLKRPLQEYIRYGVINLDKPANPSSHEVVAWIKRILRVEK 120

Query: 121 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLT 180
           TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVC+ARLHSAVPDVAKVARALE+LT
Sbjct: 121 TGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSAVPDVAKVARALESLT 180

Query: 181 GAVFQRPPLISAVKRQLRIRTIYESKLLEYDADKHLVVFWISCEAGTYVRTLCVHLGLIL 240
           GAVFQRPPLISAVKRQLRIRTIYESKLLEYDAD+HLVVFW+SCEAGTY+RT+CVHLGL+L
Sbjct: 181 GAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWVSCEAGTYIRTMCVHLGLLL 240

Query: 241 GVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQWVYDNFKDESYLRRVIMPLEVVLTSYK 300
           GVGGHMQELRRVRSGI+GE +NMVTMHDVMDAQ+VYDN +DESYLRRVIMPLE++LTSYK
Sbjct: 241 GVGGHMQELRRVRSGILGENNNMVTMHDVMDAQFVYDNSRDESYLRRVIMPLEMILTSYK 300

Query: 301 RLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEIVLMTTKGEAIALGIAEMTTAVMAT 360
           RLVVKDSAVNAICYGAKLMIPGLLRFENDI+VG E+VLMTTKGEAIA+GIAEMTT+VMAT
Sbjct: 301 RLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMAT 360

Query: 361 CDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIGEGKLDKHGKPNENTPQEWMRNLV 420
           CDHG+VAKIKRVVMDRDTYPRKWGLGPRASMKKKLI +GKLDKHGKPNE TP EW RN+V
Sbjct: 361 CDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIADGKLDKHGKPNEKTPVEWSRNVV 420

Query: 421 LPTGGDSLVASVFASDTATAKQTGAVDEEKEGGGQKRKHEEETEAALAKKLKAEKTEEV- 480
           LPTGGD+++A   A   A  +     +  + G  +KRKH++ +++      K  KT+EV 
Sbjct: 421 LPTGGDAIIAGAAA---APEEIKADAENGEAGEARKRKHDDSSDSPAPVTTKKSKTKEVE 480

Query: 481 -----EEVGKKEKKKKKDKAKGAAELSEEENAEKSEKKKKKKDKDAI--EVAMPETEKSE 540
                E+V   +KKKKKDK +   E  EE  +EK EKKKKK  K+ +  EVA P   KSE
Sbjct: 481 GEEAEEKVKSSKKKKKKDKEE---EKEEEAGSEKKEKKKKKDKKEEVIEEVASP---KSE 540

Query: 541 KKKKKKDKDAKEAGTPE----TEKSEKKKKKKDKESIQNGEADGQVDASEKKKKKKKNKE 593
           KKKKKK KD + A   E     EKSEKKKKKKD                  KKKK K+ E
Sbjct: 541 KKKKKKSKDTEAAVDAEDESAAEKSEKKKKKKD------------------KKKKNKDSE 565

[Close]

BLAST of Sed0008799 vs. TAIR 10
Match: AT5G14460.1 (Pseudouridine synthase family protein )

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-19
Identity = 63/202 (31.19%), Postives = 100/202 (49.50%), Query Frame = 0


Query: 94  ILNLDKPANPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAG 153
           +L ++KP   +S  V   ++R+++V K GH+GTLDP  TG LIVC+ +AT++V   QG  
Sbjct: 323 VLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMI 382

Query: 154 KEYVCIARLHSAV-------PDVAK----------VARALETLTGAVFQRPPLISAVK-- 213
           K Y  + RL  A        P + +          + +AL +  G ++Q PP+ SA+K  
Sbjct: 383 KGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAIKVG 442

Query: 214 ------RQLRIRTIYES----KLLEYDADKHL-----VVFWISCEAGTYVRTLCVHLGLI 262
                 +  R  T+  S     + ++D ++ L     ++F + C  GTY+R+LC  L   
Sbjct: 443 GEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADLAKA 502

The following BLAST results are available for this feature:

BLAST of Sed0008799 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539854.1	1.5e-274	86.90	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022941699.1	1.5e-274	86.92	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita moschata] >KAG6596411....	[more]
KAG7027955.1	4.2e-274	86.75	H/ACA ribonucleoprotein complex subunit 4, partial [Cucurbita argyrosperma subsp...	[more]
XP_022971402.1	2.8e-273	87.17	H/ACA ribonucleoprotein complex subunit 4-like [Cucurbita maxima]	[more]
XP_022145634.1	2.3e-272	85.83	H/ACA ribonucleoprotein complex subunit 4 [Momordica charantia]	[more]

BLAST of Sed0008799 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LD90	3.2e-224	71.85	H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=CBF...	[more]
Q5ZJH9	9.5e-176	65.18	H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE...	[more]
P40615	1.5e-173	61.67	H/ACA ribonucleoprotein complex subunit DKC1 OS=Rattus norvegicus OX=10116 GN=Dk...	[more]
Q54T81	2.8e-172	58.81	Probable H/ACA ribonucleoprotein complex subunit 4 OS=Dictyostelium discoideum O...	[more]
Q9ESX5	2.8e-172	61.66	H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE...	[more]

BLAST of Sed0008799 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FP65	7.1e-275	86.92	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1I1U9	1.3e-273	87.17	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1CVU2	1.1e-272	85.83	H/ACA ribonucleoprotein complex subunit 4 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1F3Q2	6.2e-271	86.24	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J6M3	3.4e-269	85.60	H/ACA ribonucleoprotein complex subunit 4-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Sed0008799 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57150.1	2.3e-225	71.85	homologue of NAP57	[more]
AT5G14460.1	1.2e-19	31.19	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 573..592
None	No IPR available	COILS	Coil	Coil	coord: 468..518
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 85..291 e-value: 1.3E-182 score: 608.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 439..592
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 443..592
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PROSITE	PS50890	PUA	coord: 299..374 score: 19.020662
None	No IPR available	CDD	cd02572	PseudoU_synth_hDyskerin	coord: 91..273 e-value: 3.55857E-134 score: 387.002
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 300..374 e-value: 1.3E-23 score: 94.4
IPR002478	PUA domain	PFAM	PF01472	PUA	coord: 300..372 e-value: 4.4E-21 score: 74.6
IPR012960	Dyskerin-like	SMART	SM01136	DKCLD_2	coord: 51..109 e-value: 5.6E-34 score: 128.9
IPR012960	Dyskerin-like	PFAM	PF08068	DKCLD	coord: 52..109 e-value: 8.0E-31 score: 105.9
IPR032819	tRNA pseudouridylate synthase B, C-terminal	PFAM	PF16198	TruB_C_2	coord: 230..296 e-value: 7.1E-23 score: 80.5
IPR004521	Uncharacterised domain CHP00451	TIGRFAM	TIGR00451	TIGR00451	coord: 296..371 e-value: 3.9E-8 score: 31.5
IPR004802	tRNA pseudouridine synthase B family	TIGRFAM	TIGR00425	TIGR00425	coord: 59..384 e-value: 8.2E-161 score: 532.4
IPR004802	tRNA pseudouridine synthase B family	PANTHER	PTHR23127	CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5	coord: 10..518
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 52..383 e-value: 1.3E-182 score: 608.2
IPR002501	Pseudouridine synthase II, N-terminal	PFAM	PF01509	TruB_N	coord: 113..229 e-value: 4.1E-19 score: 69.4
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 52..297
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 299..380

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008799.1	Sed0008799.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000495	box H/ACA RNA 3'-end processing
biological_process	GO:1990481	mRNA pseudouridine synthesis
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0006396	RNA processing
cellular_component	GO:0031429	box H/ACA snoRNP complex
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding