Sed0008704 (gene) Chayote v1

Overview
NameSed0008704
Typegene
OrganismSechium edule (Chayote v1)
DescriptionBEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
LocationLG08: 38695201 .. 38695736 (-)
RNA-Seq ExpressionSed0008704
SyntenySed0008704
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATCCCCTTTCTAAGAGAATCAGCTTCTCCTTTCTGCAACTTTTCTTCAAAGCTCGAAACCCTAAATTTCGAAAATGGCAGCCACATCCCGATTGGCCAGGTTCATCAGCGAGGCTCGCCCTCCCCAGTTTATGTCCGTGATTCGGCGCCGAACCCCCAATGTTTTGGACACCATTAACGAAGAAGATCACCGAGAAACCCTAGCCGCCTCTTCCTCCCTGAAGATCGAACGGTTCTCTGTTTCTTCCCCGCCGAAATTCCCCAATTCTTTCTCGATCAGGTCCCCTTGAGGCCTTTCTCCATTTTCGAGCACTTAGATTTGGGGGTTTTTTGTAATTACTTTCTGATTTTTGTTTGTAAATCCTCTGTAATCTGCTTTTCCGTTTTGCGCCGATCGGGTCCGGTGGCCGGAAATCGTGTTGTAGATAATGAGACGGCGGCGGATTCGGCTGCCGGCGTTCAATGTATGTATTTCTCAACGTGTTTTTGTACCGTGTAATTTGATAATTAATTGATAGGTTATGTTTGGTTAAG

mRNA sequence

AAAATCCCCTTTCTAAGAGAATCAGCTTCTCCTTTCTGCAACTTTTCTTCAAAGCTCGAAACCCTAAATTTCGAAAATGGCAGCCACATCCCGATTGGCCAGGTTCATCAGCGAGGCTCGCCCTCCCCAGTTTATGTCCGTGATTCGGCGCCGAACCCCCAATGTTTTGGACACCATTAACGAAGAAGATCACCGAGAAACCCTAGCCGCCTCTTCCTCCCTGAAGATCGAACGGTTCTCTGTTTCTTCCCCGCCGAAATTCCCCAATTCTTTCTCGATCAGGTCCCCTTGAGGCCTTTCTCCATTTTCGAGCACTTAGATTTGGGGGTTTTTTGTAATTACTTTCTGATTTTTGTTTGTAAATCCTCTGTAATCTGCTTTTCCGTTTTGCGCCGATCGGGTCCGGTGGCCGGAAATCGTGTTGTAGATAATGAGACGGCGGCGGATTCGGCTGCCGGCGTTCAATGTATGTATTTCTCAACGTGTTTTTGTACCGTGTAATTTGATAATTAATTGATAGGTTATGTTTGGTTAAG

Coding sequence (CDS)

ATGGCAGCCACATCCCGATTGGCCAGGTTCATCAGCGAGGCTCGCCCTCCCCAGTTTATGTCCGTGATTCGGCGCCGAACCCCCAATGTTTTGGACACCATTAACGAAGAAGATCACCGAGAAACCCTAGCCGCCTCTTCCTCCCTGAAGATCGAACGGTTCTCTGTTTCTTCCCCGCCGAAATTCCCCAATTCTTTCTCGATCAGGTCCCCTTGA

Protein sequence

MAATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDHRETLAASSSLKIERFSVSSPPKFPNSFSIRSP
Homology
BLAST of Sed0008704 vs. NCBI nr
Match: KAA0054015.1 (hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK20701.1 hypothetical protein E5676_scaffold480G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1  MAATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDHRETLAASSSLKIERFSVSSPP 60
          MAATSRLARFISEA PPQF+SV+RRR+P VLDTINEED RE+LA+SSS KI++FSVSSPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLASSSSFKIDKFSVSSPP 60

BLAST of Sed0008704 vs. NCBI nr
Match: KAG7019500.1 (hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1  MAATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDHRETLAASSSLKIERFSVSSPP 60
          MAATSRLARFISEA PPQF+SV+RRR+P VLDTINEEDHRE L++SSSLKI++FSVSS P
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60

BLAST of Sed0008704 vs. NCBI nr
Match: KAG6583880.1 (hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1  MAATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDHRETLAASSSLKIERFSVSSPP 60
          MAATSRLARFISEA PPQF+SV+RRR+P VLDTINEEDHRE L++SSSLKI++FSVSS P
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDHREALSSSSSLKIDKFSVSSLP 60

BLAST of Sed0008704 vs. NCBI nr
Match: KGN65872.1 (hypothetical protein Csa_023250 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-15
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 1  MAATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDHRETLAASSSLKIERFSVSSPP 60
          MAATSRLARFISEA PPQF+SV+RRR+P VLDTINEED RE L +SSS KI++FSV SPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSVPSPP 60

BLAST of Sed0008704 vs. NCBI nr
Match: PQP93653.1 (hypothetical protein Pyn_10926 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 0

Query: 1  MAATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDH------RETLAASSSLKIERF 60
          M A SRLARFI+E  PPQF+SV+R RT  VLDTINEE+        ++L +SSS K    
Sbjct: 1  MMANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSFKGCAC 60

Query: 61 SVSSPPKFPNSFS 68
          S SSPP F ++ S
Sbjct: 61 STSSPPSFASAAS 73

BLAST of Sed0008704 vs. ExPASy TrEMBL
Match: A0A5A7UJX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00970 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.2e-17
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 1  MAATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDHRETLAASSSLKIERFSVSSPP 60
          MAATSRLARFISEA PPQF+SV+RRR+P VLDTINEED RE+LA+SSS KI++FSVSSPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPKVLDTINEEDQRESLASSSSFKIDKFSVSSPP 60

BLAST of Sed0008704 vs. ExPASy TrEMBL
Match: A0A0A0LYE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 1  MAATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDHRETLAASSSLKIERFSVSSPP 60
          MAATSRLARFISEA PPQF+SV+RRR+P VLDTINEED RE L +SSS KI++FSV SPP
Sbjct: 1  MAATSRLARFISEACPPQFVSVMRRRSPRVLDTINEEDQREALVSSSSFKIDKFSVPSPP 60

BLAST of Sed0008704 vs. ExPASy TrEMBL
Match: A0A314XQS6 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_10926 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 0

Query: 1  MAATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDH------RETLAASSSLKIERF 60
          M A SRLARFI+E  PPQF+SV+R RT  VLDTINEE+        ++L +SSS K    
Sbjct: 1  MMANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSFKGCAC 60

Query: 61 SVSSPPKFPNSFS 68
          S SSPP F ++ S
Sbjct: 61 STSSPPSFASAAS 73

BLAST of Sed0008704 vs. ExPASy TrEMBL
Match: A0A5E4FYK5 (PREDICTED: galactosyltransferase family OS=Prunus dulcis OX=3755 GN=ALMOND_2B011231 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 3  ATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDH------RETLAASSSLKIERFSV 62
          A SRLARFI+E  PPQF+SV+R RT  VLDTINEE+        ++L +SSS K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSNDSLISSSSSKGCACST 61

Query: 63 SSPPKFPNSFS 68
           SPP F ++ S
Sbjct: 62 PSPPSFASAAS 72

BLAST of Sed0008704 vs. ExPASy TrEMBL
Match: A0A6J5WYZ3 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS25601 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 3  ATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDHR------ETLAASSSLKIERFSV 62
          A SRLARFI+E  PPQF+SV+R RT  VLDTINEE+        ++L +SS  K    S 
Sbjct: 2  ANSRLARFITEVAPPQFVSVMRHRTSKVLDTINEEEREYANTSYDSLISSSPSKGCACST 61

BLAST of Sed0008704 vs. TAIR 10
Match: AT1G30260.1 (BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 9.3e-09
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 0

Query: 3  ATSRLARFISEARPPQFMSVIRRRTPNVLDTINEEDHRETLAASSSLKIERFSVSSPPKF 62
          ATSRLARFI+E  PPQF++V+RRRT  VLDTI EE+      +          +SSP   
Sbjct: 2  ATSRLARFITEVAPPQFVTVMRRRTAKVLDTIKEEEREVGTDSIFPSSFNSKKISSPFTS 61

Query: 63 PNSFSIRS 71
          P S S+ S
Sbjct: 62 PYSSSVSS 69

BLAST of Sed0008704 vs. TAIR 10
Match: AT4G21060.1 (Galactosyltransferase family protein )

HSP 1 Score: 46.6 bits (109), Expect = 9.7e-06
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 3  ATSRLARFISEARPPQFMSVIRRR--TPNVLDTINEEDHRE 42
          ATSRLARF+SE  PPQF++V+RR       LDTI EE+++E
Sbjct: 2  ATSRLARFVSEVAPPQFVTVMRRHRAAKQKLDTIKEEENKE 42

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054015.11.5e-1681.67hypothetical protein E6C27_scaffold318G00710 [Cucumis melo var. makuwa] >TYK2070... [more]
KAG7019500.12.5e-1681.67hypothetical protein SDJN02_18461, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6583880.12.5e-1681.67hypothetical protein SDJN03_19812, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN65872.12.2e-1578.33hypothetical protein Csa_023250 [Cucumis sativus][more]
PQP93653.12.8e-0753.42hypothetical protein Pyn_10926 [Prunus yedoensis var. nudiflora][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UJX77.2e-1781.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LYE61.0e-1578.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534780 PE=4 SV=1[more]
A0A314XQS61.4e-0753.42Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_109... [more]
A0A5E4FYK52.0e-0652.11PREDICTED: galactosyltransferase family OS=Prunus dulcis OX=3755 GN=ALMOND_2B011... [more]
A0A6J5WYZ32.6e-0654.55Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS25601 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT1G30260.19.3e-0948.53BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein... [more]
AT4G21060.19.7e-0658.54Galactosyltransferase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35101OS02G0162600 PROTEINcoord: 2..57
NoneNo IPR availablePANTHERPTHR35101:SF12OS02G0162600 PROTEINcoord: 2..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0008704.1Sed0008704.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009735 response to cytokinin