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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCAATTTATTCATTCATATTTGGAAAATCTAAGACGGTTAATTATTTTCTTTTTTTCCAGTTAATTTGACTAATTTCATGTGTGGCGTCTCTAGACGCCATCTTATAGGCCAAATAAAACGTTCTTAAACAGACCCATTTTAACAAATTGTTTAAAAAAAAAGACCCCTTCCCATAATTTACTCAGCACATTCATTATCTTGTACCAAAAAGAAGTTGACTACAAAAACCTAAAGAACTTTAGTTATCTATGTTTTGTCTAACTCTAAAGGCCAATCGAGGTAAATTGGATCCTTAAGCTAGAGCTTGTGTCTTTTTGGGCTATCCTACAATTATTCAAGCTCAACAAGACCTTGTATCAAGGGATGTTATGTTCAATGAGACTGAATTCCCTTATTACTCTTTTGGTCTACATGACCAATTCCTCTACTGATTCCATGTTCTCAGATTTAGTGTTACAAAGACGAATTTCTAGGACTCAATAAGACATATCTCATGCTAAGACTTCTAGCAGTGAACCATCTACACTAAGTGATACTATATCTATTATCAGACATGATTATTTGCCTTCCACAGTTGCAGACCATGAAAATTCGAAAGTTCCTAAGATCGAACAGGAATATATGGCCTCCCCTATTAACAATAATGTCAATAACTCACCTTCCATTATTGCTAGCCCTACTAGCTCAGTTATTACACAAGCTCTAGAACAATATAATCATTCTCCAGTAAATGATATTATTGTTGAGACAATTACTGCTTTAGAAGCTTTGCCAACAGAAAATACAGCCCTTGTTCGCCGCTCCACTAGAGCTCATCAACCCCTGTCCTTTTTAAAGGACTATCATTGCCATTTGGTTACTACAACAACTCCAAAGTCTACCACTTATGTGCATCCTACTTGA mRNA sequence ATGCAATTTATTCATTCATATTTGGAAAATCTAAGACGACATGATTATTTGCCTTCCACAGTTGCAGACCATGAAAATTCGAAAGTTCCTAAGATCGAACAGGAATATATGGCCTCCCCTATTAACAATAATGTCAATAACTCACCTTCCATTATTGCTAGCCCTACTAGCTCAGTTATTACACAAGCTCTAGAACAATATAATCATTCTCCAGTAAATGATATTATTGTTGAGACAATTACTGCTTTAGAAGCTTTGCCAACAGAAAATACAGCCCTTGTTCGCCGCTCCACTAGAGCTCATCAACCCCTGTCCTTTTTAAAGGACTATCATTGCCATTTGGTTACTACAACAACTCCAAAGTCTACCACTTATGTGCATCCTACTTGA Coding sequence (CDS) ATGCAATTTATTCATTCATATTTGGAAAATCTAAGACGACATGATTATTTGCCTTCCACAGTTGCAGACCATGAAAATTCGAAAGTTCCTAAGATCGAACAGGAATATATGGCCTCCCCTATTAACAATAATGTCAATAACTCACCTTCCATTATTGCTAGCCCTACTAGCTCAGTTATTACACAAGCTCTAGAACAATATAATCATTCTCCAGTAAATGATATTATTGTTGAGACAATTACTGCTTTAGAAGCTTTGCCAACAGAAAATACAGCCCTTGTTCGCCGCTCCACTAGAGCTCATCAACCCCTGTCCTTTTTAAAGGACTATCATTGCCATTTGGTTACTACAACAACTCCAAAGTCTACCACTTATGTGCATCCTACTTGA Protein sequence MQFIHSYLENLRRHDYLPSTVADHENSKVPKIEQEYMASPINNNVNNSPSIIASPTSSVITQALEQYNHSPVNDIIVETITALEALPTENTALVRRSTRAHQPLSFLKDYHCHLVTTTTPKSTTYVHPT
Homology
BLAST of Sed0008686 vs. ExPASy TrEMBL
Match: A0A5D3E4Z5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001450 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 7.5e-04 Identity = 46/127 (36.22%), Postives = 61/127 (48.03%), Query Frame = 0
Query: 5 HSYLENLRRHDYLPSTVADHENSKVPKIEQEYMASPI--NNNVNNSPSIIASPTSSVITQ 64
HS LEN LP + D I + +A PI N N ++SP I A
Sbjct: 94 HSELENAFHDLVLPIPILD------THITTQTIAEPIIENPNTDSSPEIQA--------- 153
Query: 65 ALEQYNHSPVNDIIVETITALEALPTENTALVRRSTRAHQPLSFLKDYHCHLVT-TTTPK 124
+ + + N I T +P N + R+STR H+PL+FLKDYHCHL+T + PK
Sbjct: 154 ---EQDATNANGIPNMANTEHTTVPC-NLPMPRKSTRQHKPLNFLKDYHCHLLTHGSPPK 201
Query: 125 STTYVHP 129
TT HP
Sbjct: 214 DTTSYHP 201
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| A0A5D3E4Z5 | 7.5e-04 | 36.22 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
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Relationships
The following mRNA feature(s) are a part of this gene:
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