Sed0008670 (gene) Chayote v1

Overview


Name	Sed0008670
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein LATERAL ROOT PRIMORDIUM 1
Location	LG07: 38959439 .. 38961759 (+)
RNA-Seq Expression	Sed0008670
Synteny	Sed0008670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGGCACTGCACACTTTCAAGAATCATTCATTTCATCTTCTTCATTTCTCTCTCTCTCTTCTCTGTTTCTGTGAATTCAAACACTGAATTCCATTTCCATTTCATTCTCTCTAACAATTTCACTCCAAATTCCCCATTTCACCCTTCTTCACCCAAACCAGAAACACCCTCTTTCAATTTCTTGTTTTCAATAATCAATCCTCTGTTTTTCAACAATGTTGGGTCTCAGAGATGTTCTGTTTCTATCCCCAACATCATCTTCTCTTCACAATCAGACCCAAATCCTCTCTTCCGATCACCACCCATCCCTTCCTCTCCCCTCCTCCTCCGCTCTCGGCGTCGGCGTCGGCATTTTCCCACTTTTAACGGCAACCCCATGTCTCCTTCCTCCGCCGCCGCCGCCGCCCGATCAGGCGGCAGAGGAAAGTAGCGATCGTAATCGGAGCTCCGTCCATCTGAAGAGAACCCAGGATTTTGGGTTTGGAAAAGGGGATTCGTTCATCGGCGGCGGCGACGGCGAGGGTTCGATGGCGGTTTGTCGGGATTGTGGGAACAGAGCAAAAAAGGAGTGCAAGTATCGGAGGTGTAGGACTTGTTGTAAGGGGCGTGGGAATCATTGCTCCACTCACATGAAGAGCACGTGGGTTTCGGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGCGATGGACGGCGTCGCCACCGCGAGTGCCGACGGTGGGTCCTCGGGTTCTTCCTCTGCTGGTGCCAAACGCCCTAGAGTTTTGATTCCTTCTCAGAGTACGGCCGCCACCGCCACCGCCGCCGCCTCCGCCTCGAACACCACCACTCCCCGGAGCTTTGAAACAACCTCTAACCATCAGGGTAAATTTCTTTCTCTTTGGTTTCTCCATTTTTGTTTTGTTTTGTTTCTCATCAAGTTTAGAATTATCTGCAGCATGTTTGTTCTATCTGTTTTGGTTATTTGTTTCTTATGTATAATGATGGATTAGTTCTGATATAATTAGACTATGAATTATCTTGTTACAATTAGACTAAGAATGTTGTTCAGTGTCCGATCAACTTATATGCATCTCAATTATTTTCGCGAGACATGTTTAATAGAAAATTAAATGCTAAGTAGGTGGTTGGCTACAATTTTGAATATTTAGATGTAACTAAATATGTCTTCAAAAAGCAATCTAGTTGATTGAGGTTTGGAATTTTCAAAATGTGTTTTTTTTAGGTTTCAAGTTCGGCCCACGAGTAAGTTTAATTGTAAATATTTTTGTTATTTCTTGGATAAGTCTTGGGACGGATGCAGGTTCCCTGACTATATTAAAATGAAACTCTGATTTCCCGTTTTTGAAAAAAGAAAAAACATATTCATAACACATAATGTATGTTGTTGGATAAACTTACAATCTTTTCATGTCTCTCCGTTTCTCCTTTCTCCAACAAGGGAATGACTTTGTCCTTTGTTAAAGAACCCCAAGGAGAATGGCTTCAAAAGATCTTATGTGTTTGACTTCAGTTTCTTCCATGACTAATTCATTCAGTTCTTTTTTTTTTTTCTAAAAACCACCTATTGAAACTGTCGTGGCTTTTGACAAACAGATGCAAGCTTCAAGAAGTCGTTACCCGGGCAAGTTCGGGCTCCGGCCGTGTTCCGGTGTCATAGAGTGACAGCCCTTAGCAGTGGGGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTCTATGATCATGGAGCTAATGACAAAAATGCATCCCCATCTCTTTCACACCTCCATTTGGAAACTGGTAACCACCACAGGGAATAGAAGAAGACATTCCTCCTAATCTTTCTTCTCCAATTCCCCAAAAACTCGGTCTCAACCCCTCGAAAAATATCATATCTCTACTAGGATTCAGTGATCTCCAATGTTATTATATAAGTCCTATATAGTTATTTTCATGGTTGTAACAGGATCTTCTATTCTATAGTTTCCTAGCTTTAAAAGCTGGGATTAGCATTAAATTACTCAAGTCCAATGATAGTTGGATACTGATCTTCTGTATATTTCTGTATATTGCTGAAATTTTTTGTAACTTTCATCTATCCAAACTTCATTAAACATCTGCTGAATCAAGCTAGCCTGCGACTGTCCTCTTGTTTGATCGTCTACCTCGGAAAGTTTCACAAAATGCTGGTCTCTTAACGCGCCGTGAGCATCTTGCCACACCATGATGGGACAGACAAAATATATGCTATGTTTTTTGTTTCTACATTAACCATCTTTTACCTACAACATTGATCATTTTCACTGAAAT

mRNA sequence

GTTTGGCACTGCACACTTTCAAGAATCATTCATTTCATCTTCTTCATTTCTCTCTCTCTCTTCTCTGTTTCTGTGAATTCAAACACTGAATTCCATTTCCATTTCATTCTCTCTAACAATTTCACTCCAAATTCCCCATTTCACCCTTCTTCACCCAAACCAGAAACACCCTCTTTCAATTTCTTGTTTTCAATAATCAATCCTCTGTTTTTCAACAATGTTGGGTCTCAGAGATGTTCTGTTTCTATCCCCAACATCATCTTCTCTTCACAATCAGACCCAAATCCTCTCTTCCGATCACCACCCATCCCTTCCTCTCCCCTCCTCCTCCGCTCTCGGCGTCGGCGTCGGCATTTTCCCACTTTTAACGGCAACCCCATGTCTCCTTCCTCCGCCGCCGCCGCCGCCCGATCAGGCGGCAGAGGAAAGTAGCGATCGTAATCGGAGCTCCGTCCATCTGAAGAGAACCCAGGATTTTGGGTTTGGAAAAGGGGATTCGTTCATCGGCGGCGGCGACGGCGAGGGTTCGATGGCGGTTTGTCGGGATTGTGGGAACAGAGCAAAAAAGGAGTGCAAGTATCGGAGGTGTAGGACTTGTTGTAAGGGGCGTGGGAATCATTGCTCCACTCACATGAAGAGCACGTGGGTTTCGGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGCGATGGACGGCGTCGCCACCGCGAGTGCCGACGGTGGGTCCTCGGGTTCTTCCTCTGCTGGTGCCAAACGCCCTAGAGTTTTGATTCCTTCTCAGAGTACGGCCGCCACCGCCACCGCCGCCGCCTCCGCCTCGAACACCACCACTCCCCGGAGCTTTGAAACAACCTCTAACCATCAGGATGCAAGCTTCAAGAAGTCGTTACCCGGGCAAGTTCGGGCTCCGGCCGTGTTCCGGTGTCATAGAGTGACAGCCCTTAGCAGTGGGGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTCTATGATCATGGAGCTAATGACAAAAATGCATCCCCATCTCTTTCACACCTCCATTTGGAAACTGGTAACCACCACAGGGAATAGAAGAAGACATTCCTCCTAATCTTTCTTCTCCAATTCCCCAAAAACTCGGTCTCAACCCCTCGAAAAATATCATATCTCTACTAGGATTCAGTGATCTCCAATGTTATTATATAAGTCCTATATAGTTATTTTCATGGTTGTAACAGGATCTTCTATTCTATAGTTTCCTAGCTTTAAAAGCTGGGATTAGCATTAAATTACTCAAGTCCAATGATAGTTGGATACTGATCTTCTGTATATTTCTGTATATTGCTGAAATTTTTTGTAACTTTCATCTATCCAAACTTCATTAAACATCTGCTGAATCAAGCTAGCCTGCGACTGTCCTCTTGTTTGATCGTCTACCTCGGAAAGTTTCACAAAATGCTGGTCTCTTAACGCGCCGTGAGCATCTTGCCACACCATGATGGGACAGACAAAATATATGCTATGTTTTTTGTTTCTACATTAACCATCTTTTACCTACAACATTGATCATTTTCACTGAAAT

Coding sequence (CDS)

ATGTTGGGTCTCAGAGATGTTCTGTTTCTATCCCCAACATCATCTTCTCTTCACAATCAGACCCAAATCCTCTCTTCCGATCACCACCCATCCCTTCCTCTCCCCTCCTCCTCCGCTCTCGGCGTCGGCGTCGGCATTTTCCCACTTTTAACGGCAACCCCATGTCTCCTTCCTCCGCCGCCGCCGCCGCCCGATCAGGCGGCAGAGGAAAGTAGCGATCGTAATCGGAGCTCCGTCCATCTGAAGAGAACCCAGGATTTTGGGTTTGGAAAAGGGGATTCGTTCATCGGCGGCGGCGACGGCGAGGGTTCGATGGCGGTTTGTCGGGATTGTGGGAACAGAGCAAAAAAGGAGTGCAAGTATCGGAGGTGTAGGACTTGTTGTAAGGGGCGTGGGAATCATTGCTCCACTCACATGAAGAGCACGTGGGTTTCGGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGCGATGGACGGCGTCGCCACCGCGAGTGCCGACGGTGGGTCCTCGGGTTCTTCCTCTGCTGGTGCCAAACGCCCTAGAGTTTTGATTCCTTCTCAGAGTACGGCCGCCACCGCCACCGCCGCCGCCTCCGCCTCGAACACCACCACTCCCCGGAGCTTTGAAACAACCTCTAACCATCAGGATGCAAGCTTCAAGAAGTCGTTACCCGGGCAAGTTCGGGCTCCGGCCGTGTTCCGGTGTCATAGAGTGACAGCCCTTAGCAGTGGGGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTCTATGATCATGGAGCTAATGACAAAAATGCATCCCCATCTCTTTCACACCTCCATTTGGAAACTGGTAACCACCACAGGGAATAG

Protein sequence

MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPPPPPPDQAAEESSDRNRSSVHLKRTQDFGFGKGDSFIGGGDGEGSMAVCRDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASADGGSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDASFKKSLPGQVRAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLHLETGNHHRE

Homology

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BLAST of Sed0008670 vs. NCBI nr
Match: XP_038892899.1 (protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida])

HSP 1 Score: 474.6 bits (1220), Expect = 6.4e-130
Identity = 249/305 (81.64%), Postives = 271/305 (88.85%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           MLGLRDVLF++PT SSLH QTQI+SSDHHPSLPLPSS+ALGV VGIFPLLTATPC LPPP
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLTATPC-LPPP 60

Query: 61  PPPPDQAAEESSDRNRSSVHLKRTQDFGFGKGDSFIGG-----------GD-GEGSMAVC 120
            P P+Q A++ +DR+RS  +LKRTQDFGFGKGDS +GG           GD G+GSMAVC
Sbjct: 61  QPLPNQTADDVTDRSRSLENLKRTQDFGFGKGDSLMGGAGNNVSDEQVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASADG 180
           RDCGNRAKKEC+YRRCRTCCKGRGNHCSTH+KSTWV AARRRERQMLV MDGVATAS DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDASFKKSLPGQV 240
           GSSGSSSAGAKRPRVLIPSQSTA  A AAAS SN TTPRSFETTS+HQDASFKKSLPG V
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSTA--AAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 240

Query: 241 RAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLHLETG 294
           RAPAVFRCHRVTA++SGEGELAYQATVNIGGHVFKGFLYD GA+DKNA PS+SHLHL++G
Sbjct: 241 RAPAVFRCHRVTAINSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSG 300

[Close]

BLAST of Sed0008670 vs. NCBI nr
Match: XP_008446964.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo])

HSP 1 Score: 467.6 bits (1202), Expect = 7.8e-128
Identity = 245/305 (80.33%), Postives = 265/305 (86.89%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           MLGLRDVLF++PT SSLH QTQI+SSDHHPSLPLPSS+ALGV VGIFPLL ATPCL P  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPPDQAAEESSDRNRSSVHLKRTQDFGFGKGDSFIGG-----------GD-GEGSMAVC 120
           PPP +   ++ +DR R+  +LKRTQDFGFGKG+S IGG           GD G+GSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASADG 180
           RDCGNRAKKEC+YRRCRTCCKGRGNHCSTH+KSTWV AARRRERQMLV MDGVATAS DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDASFKKSLPGQV 240
           GSSGSSSAGAKRPRVLIPSQS  A A AAAS SN TTPRSFETTS+HQDASFKKSLPG V
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQS--AAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 240

Query: 241 RAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLHLETG 294
           RAPAVFRCHRVTA+SSGEGELAYQATVNIGGHVFKGFLYD GA+DKNA PS+SHLHL++G
Sbjct: 241 RAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSG 300

[Close]

BLAST of Sed0008670 vs. NCBI nr
Match: XP_004142483.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypothetical protein Csa_008495 [Cucumis sativus])

HSP 1 Score: 465.3 bits (1196), Expect = 3.9e-127
Identity = 244/305 (80.00%), Postives = 264/305 (86.56%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           MLGLRDVLF++PT SSLH QTQI+SSDHHPSLPLPSS+ALGV VGIFPLL ATPCL P  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPPDQAAEESSDRNRSSVHLKRTQDFGFGKGDSFIGG-----------GD-GEGSMAVC 120
           PPP +   ++ +DR R+  +LKRTQDFGFGKG+S I G           GD G+GSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASADG 180
           RDCGNRAKKEC+YRRCRTCCKGRGNHCSTH+KSTWV AARRRERQMLV MDGVATAS DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDASFKKSLPGQV 240
           GSSGSSSAGAKRPRVLIPSQS  A A AAAS SN TTPRSFETTS+HQDASFKKSLPG V
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQS--AAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 240

Query: 241 RAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLHLETG 294
           RAPAVFRCHRVTA+SSGEGELAYQATVNIGGHVFKGFLYD GA+DKNA PS+SHLHL++G
Sbjct: 241 RAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSG 300

[Close]

BLAST of Sed0008670 vs. NCBI nr
Match: KAA0034761.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK09315.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa])

HSP 1 Score: 457.2 bits (1175), Expect = 1.1e-124
Identity = 245/321 (76.32%), Postives = 265/321 (82.55%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           MLGLRDVLF++PT SSLH QTQI+SSDHHPSLPLPSS+ALGV VGIFPLL ATPCL P  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPPDQAAEESSDRNRSSVHLKRTQDFGFGKGDSFIGG-----------GD-GEGSMAVC 120
           PPP +   ++ +DR R+  +LKRTQDFGFGKG+S IGG           GD G+GSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASADG 180
           RDCGNRAKKEC+YRRCRTCCKGRGNHCSTH+KSTWV AARRRERQMLV MDGVATAS DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQ------------ 240
           GSSGSSSAGAKRPRVLIPSQS  A A AAAS SN TTPRSFETTS+HQ            
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQS--AAAAAAASTSNATTPRSFETTSSHQDQFLNPPLGILM 240

Query: 241 ----DASFKKSLPGQVRAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGAN 294
               DASFKKSLPG VRAPAVFRCHRVTA+SSGEGELAYQATVNIGGHVFKGFLYD GA+
Sbjct: 241 TLKPDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGAD 300

[Close]

BLAST of Sed0008670 vs. NCBI nr
Match: XP_022138928.1 (protein LATERAL ROOT PRIMORDIUM 1 [Momordica charantia])

HSP 1 Score: 456.8 bits (1174), Expect = 1.4e-124
Identity = 246/308 (79.87%), Postives = 261/308 (84.74%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQ-TQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPP 60
           MLGLRDVLF++PT SSLH Q TQI+SSDHHPSLPLPSS+ALGV VGIFPLL ATPC LP 
Sbjct: 5   MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPC-LPQ 64

Query: 61  PPPPPDQAAEESSDRNRSSVHLKRTQDFGFGKGDSFIGGGD-----------GEGSMAVC 120
           PPPPP  AAE S    R   +LKRTQDFGFGKGDS I GG+           G+ SM VC
Sbjct: 65  PPPPPPPAAEVS--ERRGVDNLKRTQDFGFGKGDSLIAGGNNALDEPVRGDAGDSSMGVC 124

Query: 121 RDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASADG 180
           RDCGNRAKKEC YRRCRTCCKGRGNHCSTH+KSTWVSAARRRERQMLV MDGVATAS DG
Sbjct: 125 RDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDG 184

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAATATAA---ASASNTTTPRSFETTSNHQDASFKKSLP 240
           GSSGSSSAGAKRPRVLIPSQSTAA A A+   AS SN TTPRSFET+SNHQDASFKKSLP
Sbjct: 185 GSSGSSSAGAKRPRVLIPSQSTAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLP 244

Query: 241 GQVRAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLHL 294
           GQVRAPAVFRCHRVTA+SSGEGELAYQATVNIGGHVFKGFLYD G +DKN  PS+SHLHL
Sbjct: 245 GQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHL 304

[Close]

BLAST of Sed0008670 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.2e-54
Identity = 140/308 (45.45%), Postives = 178/308 (57.79%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           M+GLRDV  ++P     H    ++S   H +    +++ALGVGV   PLLTA        
Sbjct: 3   MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGVGV--IPLLTA-------- 62

Query: 61  PPPPDQAAEES---------------SDRNRSSVHLKRTQDFGFGKGDSFIGGGDGEGSM 120
              P Q  E+S               ++     +H K T     G   +  G G G    
Sbjct: 63  -GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGT 122

Query: 121 AVCRDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATAS 180
           A C+DCGN+AKKECK RRCRTCCK RG  CSTH+KSTWVSAARRRERQ++        A+
Sbjct: 123 ATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTGAN 182

Query: 181 ADGGSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQD-ASFKKSL 240
              GSS S+S+G K+PR++   Q     AT+  S SN T P+SFET+S+ QD    +++ 
Sbjct: 183 PTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSREAW 242

Query: 241 PGQVRAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLH 292
           PGQVRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYD G   K   PS+S LH
Sbjct: 243 PGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLH 291

[Close]

BLAST of Sed0008670 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-28
Identity = 77/164 (46.95%), Postives = 98/164 (59.76%), Query Frame = 0


Query: 108 CRDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASAD 167
           CRDCGN+AKK+C + RCRTCCK RG  CSTH++STW+  ARRRERQ  + M      S  
Sbjct: 94  CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM------STS 153

Query: 168 GGSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDASFKKSLPGQ 227
           GG  GS S GA      IP +    T    +S+S      S        +ASF    PG+
Sbjct: 154 GGGGGSGSGGAGGGGSSIPKRHRDPTLPGTSSSSRLP---SHSAGLEMGEASF----PGE 213

Query: 228 VRAPAVFRCHRVTAL-SSGEGELAYQATVNIGGHVFKGFLYDHG 271
           V + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYD G
Sbjct: 214 VSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQG 244

[Close]

BLAST of Sed0008670 vs. ExPASy Swiss-Prot
Match: Q9M2U4 (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.5e-28
Identity = 73/176 (41.48%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 107 VCRDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASA 166
           VCRDCGNRAKKEC + RCRTCCK RG +C TH+KSTW+ ++  R                
Sbjct: 40  VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR---------------- 99

Query: 167 DGGSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDASFKKSLPG 226
                 SSS   ++ ++ I  QS+   +                TT++ Q+  F++ LPG
Sbjct: 100 -----SSSSPSERKKKLKIDKQSSPNVSL-------------LPTTTSRQERGFREGLPG 159

Query: 227 QVRAPAVFRCHRVTALSSGE-GELAYQATVNIGGHVFKGFLYDHGANDKNASPSLS 282
           ++ APAVF+  RVTA+S+ E  E+ YQATV I GH+FKGFL+ +G +   A P LS
Sbjct: 160 KIEAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]

BLAST of Sed0008670 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 2.1e-27
Identity = 78/174 (44.83%), Postives = 98/174 (56.32%), Query Frame = 0


Query: 98  GGDGEGSMAV-CRDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLV 157
           GG G GS  V C+DCGN+AKK+C + RCRTCCK RG  CSTH++STWV AA+RRERQ  +
Sbjct: 133 GGSGGGSGGVSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQL 192

Query: 158 AMDGVATASADGGSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQ 217
           A     T    G S        KR R  +P+ S++   T   S S               
Sbjct: 193 ATVQPQTQLPRGESV------PKRHRENLPATSSSLVCTRIPSHSGLEV----------- 252

Query: 218 DASFKKSLPGQVRAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHG 271
                 + P +V + AVFRC RV+++  GE E AYQ  V+IGGH+FKG LYD G
Sbjct: 253 -----GNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLG 284

[Close]

BLAST of Sed0008670 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-25
Identity = 77/179 (43.02%), Postives = 103/179 (57.54%), Query Frame = 0


Query: 99  GDGEGSMAVCRDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAM 158
           G G G  + C+DCGN++KK+C + RCRTCCK RG  C TH+KSTWV AA+RRERQ     
Sbjct: 112 GSGSGGPS-CQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQ----- 171

Query: 159 DGVATASADGGSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDA 218
             ++T        GS     KR R  IP++ST+   T   S            TS  +  
Sbjct: 172 QQLSTGQQPQQLGGSV---PKRQRERIPARSTSMAYTRIPS----------NNTSGLEVG 231

Query: 219 SFKKSLPGQVRAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNAS 278
           +F    P +V + AVFRC RV+++   E E AY+  V+IGGHVFKG LYD G  ++++S
Sbjct: 232 NF----PPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSSS 267

[Close]

BLAST of Sed0008670 vs. ExPASy TrEMBL
Match: A0A1S3BFS5 (protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.8e-128
Identity = 245/305 (80.33%), Postives = 265/305 (86.89%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           MLGLRDVLF++PT SSLH QTQI+SSDHHPSLPLPSS+ALGV VGIFPLL ATPCL P  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPPDQAAEESSDRNRSSVHLKRTQDFGFGKGDSFIGG-----------GD-GEGSMAVC 120
           PPP +   ++ +DR R+  +LKRTQDFGFGKG+S IGG           GD G+GSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASADG 180
           RDCGNRAKKEC+YRRCRTCCKGRGNHCSTH+KSTWV AARRRERQMLV MDGVATAS DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDASFKKSLPGQV 240
           GSSGSSSAGAKRPRVLIPSQS  A A AAAS SN TTPRSFETTS+HQDASFKKSLPG V
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQS--AAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 240

Query: 241 RAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLHLETG 294
           RAPAVFRCHRVTA+SSGEGELAYQATVNIGGHVFKGFLYD GA+DKNA PS+SHLHL++G
Sbjct: 241 RAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSG 300

[Close]

BLAST of Sed0008670 vs. ExPASy TrEMBL
Match: A0A0A0KWX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.9e-127
Identity = 244/305 (80.00%), Postives = 264/305 (86.56%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           MLGLRDVLF++PT SSLH QTQI+SSDHHPSLPLPSS+ALGV VGIFPLL ATPCL P  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPPDQAAEESSDRNRSSVHLKRTQDFGFGKGDSFIGG-----------GD-GEGSMAVC 120
           PPP +   ++ +DR R+  +LKRTQDFGFGKG+S I G           GD G+GSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASADG 180
           RDCGNRAKKEC+YRRCRTCCKGRGNHCSTH+KSTWV AARRRERQMLV MDGVATAS DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDASFKKSLPGQV 240
           GSSGSSSAGAKRPRVLIPSQS  A A AAAS SN TTPRSFETTS+HQDASFKKSLPG V
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQS--AAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 240

Query: 241 RAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLHLETG 294
           RAPAVFRCHRVTA+SSGEGELAYQATVNIGGHVFKGFLYD GA+DKNA PS+SHLHL++G
Sbjct: 241 RAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSG 300

[Close]

BLAST of Sed0008670 vs. ExPASy TrEMBL
Match: A0A5D3CCT8 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G003120 PE=3 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 5.1e-125
Identity = 245/321 (76.32%), Postives = 265/321 (82.55%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           MLGLRDVLF++PT SSLH QTQI+SSDHHPSLPLPSS+ALGV VGIFPLL ATPCL P  
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPPDQAAEESSDRNRSSVHLKRTQDFGFGKGDSFIGG-----------GD-GEGSMAVC 120
           PPP +   ++ +DR R+  +LKRTQDFGFGKG+S IGG           GD G+GSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASADG 180
           RDCGNRAKKEC+YRRCRTCCKGRGNHCSTH+KSTWV AARRRERQMLV MDGVATAS DG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQ------------ 240
           GSSGSSSAGAKRPRVLIPSQS  A A AAAS SN TTPRSFETTS+HQ            
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQS--AAAAAAASTSNATTPRSFETTSSHQDQFLNPPLGILM 240

Query: 241 ----DASFKKSLPGQVRAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGAN 294
               DASFKKSLPG VRAPAVFRCHRVTA+SSGEGELAYQATVNIGGHVFKGFLYD GA+
Sbjct: 241 TLKPDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGAD 300

[Close]

BLAST of Sed0008670 vs. ExPASy TrEMBL
Match: A0A6J1CEG6 (protein LATERAL ROOT PRIMORDIUM 1 OS=Momordica charantia OX=3673 GN=LOC111009988 PE=3 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 6.7e-125
Identity = 246/308 (79.87%), Postives = 261/308 (84.74%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQ-TQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPP 60
           MLGLRDVLF++PT SSLH Q TQI+SSDHHPSLPLPSS+ALGV VGIFPLL ATPC LP 
Sbjct: 5   MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPC-LPQ 64

Query: 61  PPPPPDQAAEESSDRNRSSVHLKRTQDFGFGKGDSFIGGGD-----------GEGSMAVC 120
           PPPPP  AAE S    R   +LKRTQDFGFGKGDS I GG+           G+ SM VC
Sbjct: 65  PPPPPPPAAEVS--ERRGVDNLKRTQDFGFGKGDSLIAGGNNALDEPVRGDAGDSSMGVC 124

Query: 121 RDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASADG 180
           RDCGNRAKKEC YRRCRTCCKGRGNHCSTH+KSTWVSAARRRERQMLV MDGVATAS DG
Sbjct: 125 RDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGDG 184

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAATATAA---ASASNTTTPRSFETTSNHQDASFKKSLP 240
           GSSGSSSAGAKRPRVLIPSQSTAA A A+   AS SN TTPRSFET+SNHQDASFKKSLP
Sbjct: 185 GSSGSSSAGAKRPRVLIPSQSTAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSLP 244

Query: 241 GQVRAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLHL 294
           GQVRAPAVFRCHRVTA+SSGEGELAYQATVNIGGHVFKGFLYD G +DKN  PS+SHLHL
Sbjct: 245 GQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLHL 304

[Close]

BLAST of Sed0008670 vs. ExPASy TrEMBL
Match: A0A6J1GXY1 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111458506 PE=3 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.7e-120
Identity = 236/305 (77.38%), Postives = 258/305 (84.59%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           MLGLRDVLF++PT SSLH  TQI+SSDHHPSLPLPSS+ALGV VGIFPLL ATPCL PPP
Sbjct: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLQPPP 60

Query: 61  PPPPDQAAEESSDRNRSSVHLKRTQDFGFGKGDSFIGGG------------DGEGSMAVC 120
              PD    E SDR+RS  +LKRTQDFGFGKGDS IGGG             G+GS+ VC
Sbjct: 61  NQMPD----ELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVC 120

Query: 121 RDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASADG 180
           RDCGNRAKKEC+YRRCRTCCKGRGNHCSTH+KSTWV A+RRRERQMLV MDGVAT+    
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS---- 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDASFKKSLPGQV 240
           GSSGSSSAGAKRP+VLIPSQ+TA  A AAAS SN TTPRSFETTS+HQDASFKKSLPGQV
Sbjct: 181 GSSGSSSAGAKRPKVLIPSQTTA--AAAAASTSNATTPRSFETTSSHQDASFKKSLPGQV 240

Query: 241 RAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLHLETG 294
           +APAVF+CHRVTA+SSGEGEL YQATVNIGGHVFKGFLYD GA+ KNA PS+SHLHLE+G
Sbjct: 241 QAPAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESG 295

[Close]

BLAST of Sed0008670 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 214.9 bits (546), Expect = 8.5e-56
Identity = 140/308 (45.45%), Postives = 178/308 (57.79%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           M+GLRDV  ++P     H    ++S   H +    +++ALGVGV   PLLTA        
Sbjct: 3   MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGVGV--IPLLTA-------- 62

Query: 61  PPPPDQAAEES---------------SDRNRSSVHLKRTQDFGFGKGDSFIGGGDGEGSM 120
              P Q  E+S               ++     +H K T     G   +  G G G    
Sbjct: 63  -GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGT 122

Query: 121 AVCRDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATAS 180
           A C+DCGN+AKKECK RRCRTCCK RG  CSTH+KSTWVSAARRRERQ++        A+
Sbjct: 123 ATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTGAN 182

Query: 181 ADGGSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQD-ASFKKSL 240
              GSS S+S+G K+PR++   Q     AT+  S SN T P+SFET+S+ QD    +++ 
Sbjct: 183 PTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSREAW 242

Query: 241 PGQVRAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLH 292
           PGQVRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYD G   K   PS+S LH
Sbjct: 243 PGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLH 291

[Close]

BLAST of Sed0008670 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 214.9 bits (546), Expect = 8.5e-56
Identity = 140/308 (45.45%), Postives = 178/308 (57.79%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           M+GLRDV  ++P     H    ++S   H +    +++ALGVGV   PLLTA        
Sbjct: 3   MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGVGV--IPLLTA-------- 62

Query: 61  PPPPDQAAEES---------------SDRNRSSVHLKRTQDFGFGKGDSFIGGGDGEGSM 120
              P Q  E+S               ++     +H K T     G   +  G G G    
Sbjct: 63  -GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGT 122

Query: 121 AVCRDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATAS 180
           A C+DCGN+AKKECK RRCRTCCK RG  CSTH+KSTWVSAARRRERQ++        A+
Sbjct: 123 ATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTGAN 182

Query: 181 ADGGSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQD-ASFKKSL 240
              GSS S+S+G K+PR++   Q     AT+  S SN T P+SFET+S+ QD    +++ 
Sbjct: 183 PTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSREAW 242

Query: 241 PGQVRAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLH 292
           PGQVRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYD G   K   PS+S LH
Sbjct: 243 PGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLH 291

[Close]

BLAST of Sed0008670 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 214.9 bits (546), Expect = 8.5e-56
Identity = 140/308 (45.45%), Postives = 178/308 (57.79%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           M+GLRDV  ++P     H    ++S   H +    +++ALGVGV   PLLTA        
Sbjct: 90  MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGVGV--IPLLTA-------- 149

Query: 61  PPPPDQAAEES---------------SDRNRSSVHLKRTQDFGFGKGDSFIGGGDGEGSM 120
              P Q  E+S               ++     +H K T     G   +  G G G    
Sbjct: 150 -GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGT 209

Query: 121 AVCRDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATAS 180
           A C+DCGN+AKKECK RRCRTCCK RG  CSTH+KSTWVSAARRRERQ++        A+
Sbjct: 210 ATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTGAN 269

Query: 181 ADGGSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQD-ASFKKSL 240
              GSS S+S+G K+PR++   Q     AT+  S SN T P+SFET+S+ QD    +++ 
Sbjct: 270 PTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQDGGGSREAW 329

Query: 241 PGQVRAPAVFRCHRVTALSSGEGELAYQATVNIGGHVFKGFLYDHGANDKNASPSLSHLH 292
           PGQVRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYD G   K   PS+S LH
Sbjct: 330 PGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDLH 378

[Close]

BLAST of Sed0008670 vs. TAIR 10
Match: AT5G12330.3 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-32
Identity = 100/239 (41.84%), Postives = 129/239 (53.97%), Query Frame = 0


Query: 1   MLGLRDVLFLSPTSSSLHNQTQILSSDHHPSLPLPSSSALGVGVGIFPLLTATPCLLPPP 60
           M+GLRDV  ++P     H    ++S   H +    +++ALGVGV   PLLTA        
Sbjct: 3   MVGLRDVFLVAPAYH--HQNAGVISGSDHMNSNAAAAAALGVGV--IPLLTA-------- 62

Query: 61  PPPPDQAAEES---------------SDRNRSSVHLKRTQDFGFGKGDSFIGGGDGEGSM 120
              P Q  E+S               ++     +H K T     G   +  G G G    
Sbjct: 63  -GTPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSGSGSGASGT 122

Query: 121 AVCRDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATAS 180
           A C+DCGN+AKKECK RRCRTCCK RG  CSTH+KSTWVSAARRRERQ++        A+
Sbjct: 123 ATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTGAN 182

Query: 181 ADGGSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDASFKKSL 225
              GSS S+S+G K+PR++   Q     AT+  S SN T P+SFET+S+ Q  SF  SL
Sbjct: 183 PTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSN-TPPQSFETSSSRQ-GSFTFSL 221

[Close]

BLAST of Sed0008670 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-29
Identity = 77/164 (46.95%), Postives = 98/164 (59.76%), Query Frame = 0


Query: 108 CRDCGNRAKKECKYRRCRTCCKGRGNHCSTHMKSTWVSAARRRERQMLVAMDGVATASAD 167
           CRDCGN+AKK+C + RCRTCCK RG  CSTH++STW+  ARRRERQ  + M      S  
Sbjct: 94  CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM------STS 153

Query: 168 GGSSGSSSAGAKRPRVLIPSQSTAATATAAASASNTTTPRSFETTSNHQDASFKKSLPGQ 227
           GG  GS S GA      IP +    T    +S+S      S        +ASF    PG+
Sbjct: 154 GGGGGSGSGGAGGGGSSIPKRHRDPTLPGTSSSSRLP---SHSAGLEMGEASF----PGE 213

Query: 228 VRAPAVFRCHRVTAL-SSGEGELAYQATVNIGGHVFKGFLYDHG 271
           V + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYD G
Sbjct: 214 VSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQG 244

The following BLAST results are available for this feature:

BLAST of Sed0008670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892899.1	6.4e-130	81.64	protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]	[more]
XP_008446964.1	7.8e-128	80.33	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]	[more]
XP_004142483.1	3.9e-127	80.00	protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypothetical pro...	[more]
KAA0034761.1	1.1e-124	76.32	protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK09315.1 protein...	[more]
XP_022138928.1	1.4e-124	79.87	protein LATERAL ROOT PRIMORDIUM 1 [Momordica charantia]	[more]

BLAST of Sed0008670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	1.2e-54	45.45	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
O65517	1.9e-28	46.95	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9M2U4	2.5e-28	41.48	Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1	[more]
Q9SD40	2.1e-27	44.83	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2	[more]
Q9XGX0	2.0e-25	43.02	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]

BLAST of Sed0008670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BFS5	3.8e-128	80.33	protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 S...	[more]
A0A0A0KWX6	1.9e-127	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1	[more]
A0A5D3CCT8	5.1e-125	76.32	Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1CEG6	6.7e-125	79.87	protein LATERAL ROOT PRIMORDIUM 1 OS=Momordica charantia OX=3673 GN=LOC111009988...	[more]
A0A6J1GXY1	1.7e-120	77.38	protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Sed0008670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.2	8.5e-56	45.45	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	8.5e-56	45.45	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.4	8.5e-56	45.45	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.3	5.0e-32	41.84	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	1.4e-29	46.95	Lateral root primordium (LRP) protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 224..270 e-value: 4.4E-25 score: 85.4
IPR006510	Zinc finger, lateral root primordium type 1	TIGRFAM	TIGR01623	TIGR01623	coord: 107..149 e-value: 3.1E-23 score: 79.4
None	No IPR available	PFAM	PF05142	DUF702	coord: 106..272 e-value: 3.5E-55 score: 186.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..221
None	No IPR available	PANTHER	PTHR31604:SF28	PROTEIN SHI RELATED SEQUENCE 6	coord: 1..284
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 1..284

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008670.1	Sed0008670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009851	auxin biosynthetic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding