Sed0008635 (gene) Chayote v1

Overview


Name	Sed0008635
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribonucloprotein
Location	LG08: 35393296 .. 35395579 (-)
RNA-Seq Expression	Sed0008635
Synteny	Sed0008635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAGTTTCCTCTTAAACCCTAGAAGACGAGAAGTCAAAAACCCGGGCAGACAGAAATCTCCGTCGCCGTCGCAAACCCCATTTTTTCCGGCAGCAATGGGGAGTGATAGCGAGGCAGAGAAATCGATTCAAAAGGACAAAGAAAAGGAGAAGAAGAAGATGATGGCTCTTGCACCTATTGCTAAACCCCTTGCCGGCAAGAAGCTCTGTAAGCGCACCCTCAAGCTCGTTCGCAAAGGTATTCGATCATTTCTCTTAATCGATGTACAAGATTGTGACTCTTTTTAGCATTTTTTGTTATTTTTGAAGGCGTTTTTAATTTTGTGTTGGAAGTTTGAGCTCGAATTAGTATAATCGTTTCTTTTTTCTTCATTCGATGGATTTATCGGTTGAATCTGTAAGCTGATAACGAACCTGTGTGATACATTGATTAATTAGGATCAAGATGGGGCTATTTCTGCAAATTGATATCAGAGGATTTGTTATTTATTTCGGGTGTATCAAATGATTGTCTGCCTATGAAGTTTGCTTTTCTTCTAATGGCGTTTGTTTTATTCATTTTGACGTCGTTTTTTTGTATGGTCTGTTTTTGTTATATCGTTTTCTGCCTTCTTGAATGTGGGTTTTGCATTAAAGAAGTAACATTTTGTGCATTTTGTGTTCTTGTTCTTTCAGCTGCTGAGTACAAGTGCTTGAAGCGTGGAGTAAAGGAGGTGGTCAAAAGCATAAGGCGCGGACAAAAAGGGTAATTTATGCCATGATTTTACCTTACATTAAGTCTTGTAAAGATATATAATTTATATAATGCTAAAGATGGAACAATGGGGAGGTGTGATTAACAAATGGACAAGGAGGAACTAACCAATCATACCATTATAACTTTCCCGTTTATCATGTTTATGAGAAGATATTAAGTAATATATTATGCAATTAGCATGATTAGCCTCAGAATTTCAAGCTGCGGTGTAGCGTAGCTTTGCTTGTTAGCTGTTTCATGGAATATAGTTCCATTTGACTTTTAGAAGCATTTAAAAGTGTAATACCTAAAATCCTTTTAGAAGCTGCGGTATCTTTTGAATGGAAGGATTTAAATCACAACAATGCTTTGGAACTTTGATGCTTCCAATATAATTCATACCTAAAATTCCTTCTACGGTATGATAGTTTAATTGCTTTTCCCCTCCATCCTTTGTTTTATGCAATGCAGATTTTGTGTGATTGCTGGTAACATATCCCCAATTGACGTGATCACTCATGTTCCGATCTTATGTGAAGAAGCAGACATCCGCTACGTATATGTTCCCTCCAAGGAAGTAAGTGATCATCACTCATGTTCTACATTTGATAATGCTTGTTTTTGTTTGTTTCATTGTTGGTGATATTCAAAATAGTTGAGGAAGGTCAGAAGTGATGGCTGCATATTTGTTCATTTTTATTATTAATGAAAAATCTATACTCTGTATTTGTTACTGCTTGAGTTTCGACTACGGATTCAATATAGAACATAATTAAGTTGAAAGTGTTGCAAGTTGCTAAGTTTAGACTGAATTCCTTAGGATCCTTAAAAGTTAACCCAACTACAATTTGCCATGCTTCTTCATTCCTTGTGATAATAACAACAGGTTTTAATGTCACCAAGAGCGACACAGCAGTCAAAAGTTTAGGCTTTGAAGGTATGCTCCTCACAAGGTCTTAGATTTGAGACTTACCTGTGATATTAATTTGTAGACAATTTTCGTGTCTTCATTCCTTCAATGTCTCCTGGTCCCTAGTCAAGGGACGGCCGTGGTTACCCCGAGTATAGTGGAGCGAAGCTACGATTTCTCGATTTCAAAAATATAATAATAATAACAGGCTTTAATCATGTTTGTTCTACTACAGGATCTTGCCAATGCGGGGTCGACCAAGAGGCCAACATGTTGTGTGCTGGTACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGAATTTGACCAAGTTGTAGCAGAAGTATCAGAACTTACAAGTAGTCTTTTCTGAAGGGTAAAAATCCATTGTTCTTTAGATTTCTTCCCTTCTTTCTGCAAATGTATTTTTACCAATTTCTAGTGCAGTCATCGCTCTTAATATTAAATATGTCATAGTGGCGTTGACATTGATATTTTCCATTAGTCAAGCTATGTTTAAAATGCTCTAAGTTACAAGAAGCTGAGTGATTCAATAGAATTTGTCGGAATATAGTCTTATTAAGTTGTGAAATCAATCGTTTTCCACAAAATGG

mRNA sequence

TACAGTTTCCTCTTAAACCCTAGAAGACGAGAAGTCAAAAACCCGGGCAGACAGAAATCTCCGTCGCCGTCGCAAACCCCATTTTTTCCGGCAGCAATGGGGAGTGATAGCGAGGCAGAGAAATCGATTCAAAAGGACAAAGAAAAGGAGAAGAAGAAGATGATGGCTCTTGCACCTATTGCTAAACCCCTTGCCGGCAAGAAGCTCTGTAAGCGCACCCTCAAGCTCGTTCGCAAAGCTGCTGAGTACAAGTGCTTGAAGCGTGGAGTAAAGGAGGTGGTCAAAAGCATAAGGCGCGGACAAAAAGGATTTTGTGTGATTGCTGGTAACATATCCCCAATTGACGTGATCACTCATGTTCCGATCTTATGTGAAGAAGCAGACATCCGCTACGTATATGTTCCCTCCAAGGAAGATCTTGCCAATGCGGGGTCGACCAAGAGGCCAACATGTTGTGTGCTGGTACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGAATTTGACCAAGTTGTAGCAGAAGTATCAGAACTTACAAGTAGTCTTTTCTGAAGGGTAAAAATCCATTGTTCTTTAGATTTCTTCCCTTCTTTCTGCAAATGTATTTTTACCAATTTCTAGTGCAGTCATCGCTCTTAATATTAAATATGTCATAGTGGCGTTGACATTGATATTTTCCATTAGTCAAGCTATGTTTAAAATGCTCTAAGTTACAAGAAGCTGAGTGATTCAATAGAATTTGTCGGAATATAGTCTTATTAAGTTGTGAAATCAATCGTTTTCCACAAAATGG

Coding sequence (CDS)

ATGGGGAGTGATAGCGAGGCAGAGAAATCGATTCAAAAGGACAAAGAAAAGGAGAAGAAGAAGATGATGGCTCTTGCACCTATTGCTAAACCCCTTGCCGGCAAGAAGCTCTGTAAGCGCACCCTCAAGCTCGTTCGCAAAGCTGCTGAGTACAAGTGCTTGAAGCGTGGAGTAAAGGAGGTGGTCAAAAGCATAAGGCGCGGACAAAAAGGATTTTGTGTGATTGCTGGTAACATATCCCCAATTGACGTGATCACTCATGTTCCGATCTTATGTGAAGAAGCAGACATCCGCTACGTATATGTTCCCTCCAAGGAAGATCTTGCCAATGCGGGGTCGACCAAGAGGCCAACATGTTGTGTGCTGGTACAAACTAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAAGCTGAATTTGACCAAGTTGTAGCAGAAGTATCAGAACTTACAAGTAGTCTTTTCTGA

Protein sequence

MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSLF

Homology

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BLAST of Sed0008635 vs. NCBI nr
Match: XP_023541121.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.7 bits (753), Expect = 4.9e-76
Identity = 153/159 (96.23%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDKEKEKKK++ALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSVF 159

[Close]

BLAST of Sed0008635 vs. NCBI nr
Match: XP_022955313.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata])

HSP 1 Score: 293.9 bits (751), Expect = 8.4e-76
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDKEKEKKK++ALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKLKAEFDQVV+EVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 159

[Close]

BLAST of Sed0008635 vs. NCBI nr
Match: XP_008454886.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo] >TYJ98965.1 H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.1 bits (749), Expect = 1.4e-75
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS QKDKEKEKKK++ALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE+DIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKLKA+FDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of Sed0008635 vs. NCBI nr
Match: XP_022994544.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita maxima])

HSP 1 Score: 291.6 bits (745), Expect = 4.2e-75
Identity = 152/159 (95.60%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M SDSEAEKS  KDKEKEKKK++ALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MVSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSIF 159

[Close]

BLAST of Sed0008635 vs. NCBI nr
Match: XP_038894923.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 150/159 (94.34%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS QKDK+KEKKK++ALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHQKDKKKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKLKA+++QVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYEQVVAEVSELTSTLF 159

[Close]

BLAST of Sed0008635 vs. ExPASy Swiss-Prot
Match: Q9LEY9 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.2e-55
Identity = 115/158 (72.78%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKSIQK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITH+PILCEEA + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSL 159
           VLV  KP KG+L + E  KLK +++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of Sed0008635 vs. ExPASy Swiss-Prot
Match: P32495 (H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NHP2 PE=1 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 8.2e-34
Identity = 76/156 (48.72%), Postives = 111/156 (71.15%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDK--EKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGV 60
           MG D++  K  ++ K  +  + +M A+ P AKPLA KKL K+ LK V+KA++ K +KRGV
Sbjct: 1   MGKDNKEHKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGV 60

Query: 61  KEVVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPT 120
           KEVVK++R+G+KG  VIAG+ISP DVI+H+P+LCE+  + Y+++PSK+DL  AG+TKRPT
Sbjct: 61  KEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPT 120

Query: 121 CCVLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSEL 155
             V +    NK + G  ++E+ K  F++VV EV  L
Sbjct: 121 SVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156

[Close]

BLAST of Sed0008635 vs. ExPASy Swiss-Prot
Match: Q9P7H0 (H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nhp2 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28
Identity = 66/154 (42.86%), Postives = 103/154 (66.88%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M  D +  K     +++    + AL PIAKPLA KKL K+ +K V+KA++ K + RGVKE
Sbjct: 1   MAKDKKDHKHSGSTEDEYDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVK++R+G+KG  ++AG+ISP+DVI+H+P+LCE+ ++ Y+Y  SKE L  A +TKRPT C
Sbjct: 61  VVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSEL 155
           V++     K ++   E+   K  +++++ EV  L
Sbjct: 121 VMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152

[Close]

BLAST of Sed0008635 vs. ExPASy Swiss-Prot
Match: Q8I7X7 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri OX=7741 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-23
Identity = 61/155 (39.35%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 4   DSEAEKSIQKDKEKEKKKMMALA----PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVK 63
           + E  +    +KE  ++    LA    PIA PLA +KL KR  K V+KA++ K +++G++
Sbjct: 12  EKEEHEESGGNKEDRERAYEVLATRVNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIR 71

Query: 64  EVVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTC 123
           +V K I++G++G  +IAG+ +PI+V  H+P++CE+A I Y YVP+K+DL  A  +KRPTC
Sbjct: 72  DVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTC 131

Query: 124 CVLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSEL 155
           CVL+  KPN         E  ++ +D+ + +V+ L
Sbjct: 132 CVLL--KPN---------ESYQSSYDECLTDVTTL 155

[Close]

BLAST of Sed0008635 vs. ExPASy Swiss-Prot
Match: Q6P8C4 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis OX=8364 GN=nhp2 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-23
Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 6   EAEKSIQKDKEKEKKKMMA-LAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKS 65
           E  + + +   K   +++A L PIAKPLAG+KL K+  K V+KA + K ++RGVKEV K 
Sbjct: 7   EESEEVPETPSKSYDELLAYLNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKF 66

Query: 66  IRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVLVQ 125
           I +G+KG  V+AG+  PI+V  H+P++CE+  I Y YVPSK DL  A  +KRPTC +L++
Sbjct: 67  INKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILIK 126

[Close]

BLAST of Sed0008635 vs. ExPASy TrEMBL
Match: A0A6J1GTK9 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.0e-76
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDKEKEKKK++ALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKLKAEFDQVV+EVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELTSSIF 159

[Close]

BLAST of Sed0008635 vs. ExPASy TrEMBL
Match: A0A5D3BKS6 (Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001680 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.9e-76
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS QKDKEKEKKK++ALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE+DIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKLKA+FDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of Sed0008635 vs. ExPASy TrEMBL
Match: A0A1S3C0C8 (Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.9e-76
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS QKDKEKEKKK++ALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE+DIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKLKA+FDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 159

[Close]

BLAST of Sed0008635 vs. ExPASy TrEMBL
Match: A0A6J1K350 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.0e-75
Identity = 152/159 (95.60%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           M SDSEAEKS  KDKEKEKKK++ALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MVSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSLF 160
           VL+QTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSS+F
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSIF 159

[Close]

BLAST of Sed0008635 vs. ExPASy TrEMBL
Match: A0A0A0LVP3 (Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.3e-73
Identity = 149/159 (93.71%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSDSEAEKS  KDKEKE KK++ALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE
Sbjct: 1   MGSDSEAEKSRLKDKEKE-KKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEE++IRYVYVPSKEDLANAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESEIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSLF 160
           VLVQTKPNKGELGSTEQEKLKA+FDQVVAEVSELTS+LF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELTSTLF 158

[Close]

BLAST of Sed0008635 vs. TAIR 10
Match: AT5G08180.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-56
Identity = 115/158 (72.78%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKSIQK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITH+PILCEEA + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSL 159
           VLV  KP KG+L + E  KLK +++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of Sed0008635 vs. TAIR 10
Match: AT5G08180.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-56
Identity = 115/158 (72.78%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MGSDSEAEKSIQKDKEKEKKKMMALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60
           MGSD+EAEKSIQK+K   KK  + LAPIAKPLAGKKL KRT KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITH+PILCEEA + YVYVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKAEFDQVVAEVSELTSSL 159
           VLV  KP KG+L + E  KLK +++QV  ++ EL +S+
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155

[Close]

BLAST of Sed0008635 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 75.1 bits (183), Expect = 5.7e-14
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  YK LK+G  E  K++ RG   F V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILL 67

Query: 87  HVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKAEFDQ 146
           H+P+L E+ ++ YV+VPSK+ L  A    RP     V          S E  +LK++   
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVAEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

[Close]

BLAST of Sed0008635 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 75.1 bits (183), Expect = 5.7e-14
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  YK LK+G  E  K++ RG   F V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKAEFDQ 146
           H+P+L E+ ++ YV+VPSK+ L  A    RP     V          S E  +LK++   
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVAEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

[Close]

BLAST of Sed0008635 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 74.3 bits (181), Expect = 9.7e-14
Identity = 42/128 (32.81%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKEVVKSIRRGQKGFCVIAGNISPIDVIT 86
           P A PLA  +L    + LV++A  YK LK+G  E  K++ RG   F V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEEADIRYVYVPSKEDLANAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKAEFDQ 146
           H+P+L E+ ++ YV+VPSK+ L  A    RP     V          S E  +LK++   
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVT---------SNEASQLKSQIQH 126

Query: 147 VVAEVSEL 155
           +   + +L
Sbjct: 128 LKDAIEKL 126

The following BLAST results are available for this feature:

BLAST of Sed0008635 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541121.1	4.9e-76	96.23	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pe...	[more]
XP_022955313.1	8.4e-76	95.60	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata]	[more]
XP_008454886.1	1.4e-75	95.60	PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein [Cucumis melo]...	[more]
XP_022994544.1	4.2e-75	95.60	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita maxima]	[more]
XP_038894923.1	1.2e-74	94.34	H/ACA ribonucleoprotein complex subunit 2-like protein [Benincasa hispida]	[more]

BLAST of Sed0008635 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LEY9	2.2e-55	72.78	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana O...	[more]
P32495	8.2e-34	48.72	H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain...	[more]
Q9P7H0	4.0e-28	42.86	H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strai...	[more]
Q8I7X7	2.2e-23	39.35	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri...	[more]
Q6P8C4	2.2e-23	47.50	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis OX=...	[more]

BLAST of Sed0008635 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GTK9	4.0e-76	95.60	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1	[more]
A0A5D3BKS6	6.9e-76	95.60	Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001...	[more]
A0A1S3C0C8	6.9e-76	95.60	Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1	[more]
A0A6J1K350	2.0e-75	95.60	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111490234 PE=3 SV=1	[more]
A0A0A0LVP3	9.3e-73	93.71	Ribonucloprotein OS=Cucumis sativus OX=3659 GN=Csa_1G041530 PE=3 SV=1	[more]

BLAST of Sed0008635 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08180.1	1.6e-56	72.78	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G08180.2	1.6e-56	72.78	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	5.7e-14	33.59	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.1	5.7e-14	33.59	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	9.7e-14	32.81	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 54..68 score: 36.97 coord: 73..86 score: 29.87 coord: 89..99 score: 42.98 coord: 99..113 score: 36.06
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 101..113 score: 43.08 coord: 40..55 score: 41.25 coord: 57..67 score: 43.64 coord: 27..40 score: 50.0
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 19..155 e-value: 3.3E-49 score: 167.7
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 20..132
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 42..126 e-value: 5.7E-23 score: 80.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 2..158
None	No IPR available	PANTHER	PTHR23105:SF146	SUBFAMILY NOT NAMED	coord: 2..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008635.1	Sed0008635.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000469	cleavage involved in rRNA processing
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0003723	RNA binding