Sed0008539 (gene) Chayote v1

Overview


Name	Sed0008539
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein TIC 214
Location	Contig00297: 64310 .. 66133 (+)
RNA-Seq Expression	Sed0008539
Synteny	Sed0008539

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGCAGAGGCCTTTGGTGTCCCCTCCAGTCAAGAATTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGGGGAGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACCTCTAATTCTTATTACTTTTCAATATTGAATATGCAAAAAAAATTAAAAATGAAAAGGTCGTCTTATTCAAAACCCCTTCTCTCCCACTTTTCTCTCTCACTTCACACCTTGGAACGCACCGTTCTTATAGAGAGAGAGGCGCTTTCACATCTTCTTAACCCGAAATGGCAAATGGCTGGGGAGAGGAAAGGTTCCTTTTTTTAGGGTACCCCCGGGAACAGATCCAGTGGAGACGGGGTGGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCCTTATCTTTTTATTTTTTCTTTTTCGTTAATGGGTTAAGGGCGGGGGTTCCGTTATAAATTAAATATAGTATACCCAACCCGAATCAGCATATTTTTTTGTTTTACGCCCCGTAATTCTTCCTCAGCCAGGCTTGGGCAGAATAGCAGAGCAAGTACAAGTATTAGTAGAATAGCAAAAATGTGTTCCTCGTCATTAATATGTTTGCTCGCGGTAATTGTGACCTCTCGGGAGAATCGATGACTGCATCAAAGATGCACTTGCTAGTACTAGTACATCTGAGAATTCTTAATTGGCTAGTTGTAAATAGACCCAGACTGTGGAACAAAGGATTATCCCGGACCTACACCGAGGTATTGACGGTGATTCTCAAATATCGCAGAACATAATTTGATACGATGAGATAGAATGCAATAGAAACAAAGACACCGGGAACGGGTTACCTACTCTTAACGGTGAAAGCGAACCCTTTCATTCCGAATTCTTTAATTCGGAATGAATCAAATCTCCCCAAGTAGGATTCGAACCTACGACCAATCGGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGTAAATTAGGTCTCATAGAATTCAATTCCCGTTCTCAACCCATGACCAATATGAGCTCGAGGTTTCCTTCGTAACTCCCGGAACTTCTTCGTAGTGGCTCCGTTCCATGCCTCATTTCAGAGAGAACCTCAAAGTGGCTCTATTTCATTATATTCCATCCATATCCCAATTCCATTCATTTAATATCCCTGTGGTGTCATTGAGATAAGAGATGTCGTTTCTAGTCTATCTGTTTCTATATATATGGAAAGTTCAAAAATCATCATATAATAATCCAGAAATTGCAATAGAAAAGAAAAAGGGAGGTTTGTGATGATTTTAAAATCTTTTATACTAGGTAATCTAGTATCCTTATGCATGAAGATAATCAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG

mRNA sequence

ATGGAAGGGCAGAGGCCTTTGGTGTCCCCTCCAGTCAAGAATTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGGTACCCCCGGGAACAGATCCAGTGGAGACGGGGTGGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTACCCAGACTGTGGAACAAAGGATTATCCCGGACCTACACCGAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG

Coding sequence (CDS)

ATGGAAGGGCAGAGGCCTTTGGTGTCCCCTCCAGTCAAGAATTGGGGCCTCACAATCACTAGCCAATATGCTTTTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGAACTTGGTGGTTAAACTCTACTGCGGTGACGATACTGGTACCCCCGGGAACAGATCCAGTGGAGACGGGGTGGGGCCTGTAGCTCAGAGGATTAGAGCACGTGGCTACGAACCACGGTACCCAGACTGTGGAACAAAGGATTATCCCGGACCTACACCGAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAG

Protein sequence

MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTGTPGNRSSGDGVGPVAQRIRARGYEPRYPDCGTKDYPGPTPRALLSLPSPSSGYGRRNREESISNNRFYYGTAHDVHIDLLCASASSIG

Homology

[Close]

BLAST of Sed0008539 vs. NCBI nr
Match: CAA7014164.1 (unnamed protein product [Microthlaspi erraticum] >CAA7015545.1 unnamed protein product [Microthlaspi erraticum] >CAA7021836.1 unnamed protein product [Microthlaspi erraticum] >CAA7022817.1 unnamed protein product [Microthlaspi erraticum] >CAA7035220.1 unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37
Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
          MEG+RPLVS PVKNW LTITSQYAFL+CLSSFMVRYSGVLGVEE HQSIPNLVVKLYCGD
Sbjct: 1  MEGRRPLVSTPVKNWSLTITSQYAFLACLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGD 60

Query: 61 DT---GTPGNRSSGDGVGPVAQRIRARGYEPR 90
          DT   GTPGN SSGDGVG VAQRIRARGYEPR
Sbjct: 61 DTVGEGTPGNTSSGDGVGLVAQRIRARGYEPR 92

[Close]

BLAST of Sed0008539 vs. NCBI nr
Match: CAA7013171.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37
Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
          MEG+RPLVS PVKNW LTITSQYAFL+CLSSFMVRYSGVLGVEE HQSIPNLVVKLYCGD
Sbjct: 1  MEGRRPLVSTPVKNWSLTITSQYAFLACLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGD 60

Query: 61 DT---GTPGNRSSGDGVGPVAQRIRARGYEPR 90
          DT   GTPGN SSGDGVG VAQRIRARGYEPR
Sbjct: 61 DTVGEGTPGNTSSGDGVGLVAQRIRARGYEPR 92

[Close]

BLAST of Sed0008539 vs. NCBI nr
Match: KAD7480171.1 (hypothetical protein E3N88_03307 [Mikania micrantha])

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37
Identity = 93/140 (66.43%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 25  FLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDT---GTPGNRSSGDGVGPVAQRI 84
           F+SCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDT   GT GNRSSGD VGPV QRI
Sbjct: 127 FISCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEGTSGNRSSGDAVGPVVQRI 186

Query: 85  RARGYEPRYPDCGTKD-YPGPTPRALLSLPSPSSGY---------GRRNREESISNNRFY 144
           RARGYEPR P    +  +P   P        PS  +          +  REE ISNN FY
Sbjct: 187 RARGYEPRCPRAFEQSTHPSWHPDVSAIGRGPSYLFLSELTLWKKEKMGREEGISNNWFY 246

Query: 145 YGTAHDVHIDLLCASASSIG 152
           YGTAH VHIDLLCASASS G
Sbjct: 247 YGTAHHVHIDLLCASASSTG 266

[Close]

BLAST of Sed0008539 vs. NCBI nr
Match: PPS02855.1 (hypothetical protein GOBAR_AA17807 [Gossypium barbadense])

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-37
Identity = 98/155 (63.23%), Postives = 104/155 (67.10%), Query Frame = 0


Query: 1   MEGQRPLVSPPVKNWGLTITSQYA--FLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYC 60
           MEG+RPLVSPPVKNWGL ITSQYA  FL+ LSSFMVRYSGVLGVEE HQSIPNLVVKLYC
Sbjct: 1   MEGRRPLVSPPVKNWGLIITSQYAFPFLARLSSFMVRYSGVLGVEEQHQSIPNLVVKLYC 60

Query: 61  GDDT---GTPGNRSSGDGVGPVAQRIRARGYEPR------------------YP----DC 120
            DDT   GTPGNRSSGD VGPVAQRIRARGYEPR                  +P    D 
Sbjct: 61  VDDTVGEGTPGNRSSGDEVGPVAQRIRARGYEPRCRGFESLLAHNRPKREGPFPLGPRDY 120

Query: 121 GTKDYPGPTPRALLSLPSPSSGYGRRNREESISNN 129
           GTKDYPG   R     P+ S     R+  E + NN
Sbjct: 121 GTKDYPGHLHRGF--EPTTSQLTADRSTAELLRNN 153

[Close]

BLAST of Sed0008539 vs. NCBI nr
Match: CAA7012819.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-36
Identity = 81/92 (88.04%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
          MEG+R LVS PVKNW LTITSQYAFL+CLSSFMVRYSGVLGVEE HQSIPNLVVKLYCGD
Sbjct: 1  MEGRRHLVSTPVKNWSLTITSQYAFLACLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGD 60

Query: 61 DT---GTPGNRSSGDGVGPVAQRIRARGYEPR 90
          DT   GTPGN SSGDGVG VAQRIRARGYEPR
Sbjct: 61 DTVGEGTPGNTSSGDGVGLVAQRIRARGYEPR 92

[Close]

BLAST of Sed0008539 vs. ExPASy TrEMBL
Match: A0A6N2NAY5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS480550 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.4e-40
Identity = 85/92 (92.39%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1   MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
           MEGQRPLVSP VKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCG+
Sbjct: 489 MEGQRPLVSPTVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGE 548

Query: 61  DT---GTPGNRSSGDGVGPVAQRIRARGYEPR 90
           DT   G PGNRSSGD VGPVAQRIRARGYEPR
Sbjct: 549 DTVGEGIPGNRSSGDEVGPVAQRIRARGYEPR 580

[Close]

BLAST of Sed0008539 vs. ExPASy TrEMBL
Match: A0A6D2K9K4 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10052 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.4e-38
Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
          MEG+RPLVS PVKNW LTITSQYAFL+CLSSFMVRYSGVLGVEE HQSIPNLVVKLYCGD
Sbjct: 1  MEGRRPLVSTPVKNWSLTITSQYAFLACLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGD 60

Query: 61 DT---GTPGNRSSGDGVGPVAQRIRARGYEPR 90
          DT   GTPGN SSGDGVG VAQRIRARGYEPR
Sbjct: 61 DTVGEGTPGNTSSGDGVGLVAQRIRARGYEPR 92

[Close]

BLAST of Sed0008539 vs. ExPASy TrEMBL
Match: A0A6D2HB29 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS405 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.4e-38
Identity = 82/92 (89.13%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MEGQRPLVSPPVKNWGLTITSQYAFLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGD 60
          MEG+RPLVS PVKNW LTITSQYAFL+CLSSFMVRYSGVLGVEE HQSIPNLVVKLYCGD
Sbjct: 1  MEGRRPLVSTPVKNWSLTITSQYAFLACLSSFMVRYSGVLGVEEQHQSIPNLVVKLYCGD 60

Query: 61 DT---GTPGNRSSGDGVGPVAQRIRARGYEPR 90
          DT   GTPGN SSGDGVG VAQRIRARGYEPR
Sbjct: 61 DTVGEGTPGNTSSGDGVGLVAQRIRARGYEPR 92

[Close]

BLAST of Sed0008539 vs. ExPASy TrEMBL
Match: A0A5N6Q8H4 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_03307 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.4e-38
Identity = 93/140 (66.43%), Postives = 98/140 (70.00%), Query Frame = 0


Query: 25  FLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDT---GTPGNRSSGDGVGPVAQRI 84
           F+SCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDT   GT GNRSSGD VGPV QRI
Sbjct: 127 FISCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYCGDDTVGEGTSGNRSSGDAVGPVVQRI 186

Query: 85  RARGYEPRYPDCGTKD-YPGPTPRALLSLPSPSSGY---------GRRNREESISNNRFY 144
           RARGYEPR P    +  +P   P        PS  +          +  REE ISNN FY
Sbjct: 187 RARGYEPRCPRAFEQSTHPSWHPDVSAIGRGPSYLFLSELTLWKKEKMGREEGISNNWFY 246

Query: 145 YGTAHDVHIDLLCASASSIG 152
           YGTAH VHIDLLCASASS G
Sbjct: 247 YGTAHHVHIDLLCASASSTG 266

[Close]

BLAST of Sed0008539 vs. ExPASy TrEMBL
Match: A0A2P5XHN3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA17807 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.3e-38
Identity = 98/155 (63.23%), Postives = 104/155 (67.10%), Query Frame = 0


Query: 1   MEGQRPLVSPPVKNWGLTITSQYA--FLSCLSSFMVRYSGVLGVEEPHQSIPNLVVKLYC 60
           MEG+RPLVSPPVKNWGL ITSQYA  FL+ LSSFMVRYSGVLGVEE HQSIPNLVVKLYC
Sbjct: 1   MEGRRPLVSPPVKNWGLIITSQYAFPFLARLSSFMVRYSGVLGVEEQHQSIPNLVVKLYC 60

Query: 61  GDDT---GTPGNRSSGDGVGPVAQRIRARGYEPR------------------YP----DC 120
            DDT   GTPGNRSSGD VGPVAQRIRARGYEPR                  +P    D 
Sbjct: 61  VDDTVGEGTPGNRSSGDEVGPVAQRIRARGYEPRCRGFESLLAHNRPKREGPFPLGPRDY 120

Query: 121 GTKDYPGPTPRALLSLPSPSSGYGRRNREESISNN 129
           GTKDYPG   R     P+ S     R+  E + NN
Sbjct: 121 GTKDYPGHLHRGF--EPTTSQLTADRSTAELLRNN 153

The following BLAST results are available for this feature:

BLAST of Sed0008539 vs. NCBI nr


Match Name	E-value	Identity	Description
CAA7014164.1	1.1e-37	89.13	unnamed protein product [Microthlaspi erraticum] >CAA7015545.1 unnamed protein p...	[more]
CAA7013171.1	1.1e-37	89.13	unnamed protein product [Microthlaspi erraticum]	[more]
KAD7480171.1	1.1e-37	66.43	hypothetical protein E3N88_03307 [Mikania micrantha]	[more]
PPS02855.1	1.9e-37	63.23	hypothetical protein GOBAR_AA17807 [Gossypium barbadense]	[more]
CAA7012819.1	1.2e-36	88.04	unnamed protein product [Microthlaspi erraticum]	[more]

BLAST of Sed0008539 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0008539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2NAY5	3.4e-40	92.39	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS480550 PE=4 SV=...	[more]
A0A6D2K9K4	5.4e-38	89.13	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10052 ...	[more]
A0A6D2HB29	5.4e-38	89.13	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS405 PE...	[more]
A0A5N6Q8H4	5.4e-38	66.43	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_03307 PE=4 SV=1	[more]
A0A2P5XHN3	9.3e-38	63.23	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA17807 PE=4 SV...	[more]

BLAST of Sed0008539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..120
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..28 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008539.1	Sed0008539.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane