Sed0008482 (gene) Chayote v1

Overview


Name	Sed0008482
Type	gene
Organism	Sechium edule (Chayote v1)
Description	UPF0690 protein C1orf52 homolog
Location	LG07: 3263607 .. 3265917 (+)
RNA-Seq Expression	Sed0008482
Synteny	Sed0008482

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTTCTAAATAAGAGAAAAAAAAGAGGGCTTCATTTTTCATTTCCTGAATTTCGCAAGCCCTAAATTCCGAACAAAGCTCAGTCGCCAGCTTCAAGCTCCGAATCTGCGTTCGGTAGTTCTCTCTCAATCTTCTATCGTTAATTCTTTGCTTTCTCATACTTTTTCCACTTCAATGGGATTTGTTGTTCATATGAATTTCGAATCGAACCAACCATTTCCTCTTCACAGATTTCGCGAGAAACGAATCCGATTATCTTAATTTTGAGGGTTTTTTTTTTAGTTGAATTCAGTGTGTTGTGTGTACTATCTGATCTGTAGTTGAGTTGAAATGCGGCCCTTCAATTGATTTTGTGTTGAATTTTCTTTATGTATTGTTCTGGTACAGAGGGGTTTGCCATTTTTTTTCCCTCTTTGGATTCTGGTCGATTGATTTAAAGGTCTTTATTGACTAATTTGATTCAGATTGGACTTCCTTTTCCATGAAAAGGGCAATGCCATGGAGTGATGAAGAGGACAACTCGTCATCGAAAGAGTCGTCTTTATCGCAGTCGGATTCAGATGCTGATGAAGATGGTGGTGAGGCAAAAGCAAGCTTTCGAGTTAAAGCTGGACGGTCCTCTAAAGAAAAAGACACTGAAGGTTATAATTGCTTTGCTCCGCTAGTACTCTTCTATATGAAAATTTTAATATAAAAGCTTCATGCAAAACCATTTATATTCGTTTGTCTCTCTGTTTTGTATTTTCTGTTAATAAAGTAATCCGTATTGTGTCAGAATGAAATGTTAAAAGTAATCCATGCACTGATACGAGGGTGTTCCAGAGCTAGTTATTTTTCCCTGCATGCTACATTTTGTTTCAAGTGCGTAGTGTAGCATTTGTTTTGGGTATAGTGCTTTCCATTGTTGGCTTAATTTAATATAAGATTATGGTAATTGGTTTATGCCTTACAGTTATGAGATGTTAAGTTTTCCTGAGTTCATTAGTTTGAATTGACTTAAACGAAGATGCAAATGCATAACATGTTTTGGCTTATCAAGAGTAATCTAGGGTTATTTATGAAGATAAAAGAAACCCACTTCAAATGGAAAGAAAAAGGTAGGATTGGGATTTTAAATATATCTGTGGCCTCTTTTCCCTAAGGGGCAGCCTTGTTGGTAGAGGCTTTATGGTCTTTAAGGTATGTTTCCTTAGGTATCTCAAGTTTGAAACTCACGAGTGAGCCTAATTGTAAATTTTTTCCTGTTGGCTCATGGGTATGTGGTGGAATAAAACTTTGATTTTCGGTTATCAATAAAAATGTAGCCTTTTGATTTTTGTGTAAGGCTGGCAGTGGTGTGGTGAATATTCTCTATCTTTAAGTCTTGTAGACATGGAGGGGCTAGAAGCTTGGATGTGAACAAAAGACTGCGATCCATTTAATGTAGTTCAACTATAACGATTTAGTGAATTGGGGAAAAAAAATTGATCTGCAGTGTTTGCAACATCTCTCTATATTCTAAATATGATAAAGAAACCATTAGCTTAATTTTCTCGGTGGATGTTGCTTCATGTTTGCAGTCAAATCTGGAAAGCGGAAGAGCATTGCTGTGGACTTTGATACATTGAAACGCCACGGCTACAAAGGCGGTCCATCAATCTTGAAAGTGCCACCGCCCAAAGAGAATGAGAAGCAAGATTGGTCATGGTCTACTGGTAGGGAGACTCGTGAAAACAGAAACACTGAAGAATCGTATGAAGAGAGACAGAAAACGAGGGCTGCTTTAGAAAATGGCGAGCAGCTGCTAACCGCGCTAACTCGGAAGGAGAAGAAGAATATATCCTTCTCCCAGAAGGAAAAGAGGAAAAGAGAGCTTGGTCAAGCAAGCAGGGGGAAAAACTATGTCGAGGAAGAAAAGAGAACGTTGAGGGAAAGTGGCATCTACTCTGGTTTTGATACCTGACTTTTCCCATTTCAACTAATATTTAACAATCCATTTCATGTCAAAGCTTCATGTTGCAAGATCATCCTTGTAGCGGACTGTATTAATTACCTCCAACAACAAGCAGCTGACAGGAACCAATGTCTAGTGCATTACGAAATATCAACTATCCTTATACATTTCGGGACGAGAACTGTATGTAAAGGAAACGATCATCTTCATGCTTTTCCGGTACATATGAAAATAGGGTATAGCTGATCTTGTACCATTTAACGCTAGCATACTGGATATTCAGTTGTATCATGTTATGTTTTATGGTCATTGATAAAAACATCTTCAATATCCCAACAGGTTGTATATGACAGTGAAAGAAGCTGTTTATCACCAA

mRNA sequence

AATTTTTCTAAATAAGAGAAAAAAAAGAGGGCTTCATTTTTCATTTCCTGAATTTCGCAAGCCCTAAATTCCGAACAAAGCTCAGTCGCCAGCTTCAAGCTCCGAATCTGCGTTCGATTGGACTTCCTTTTCCATGAAAAGGGCAATGCCATGGAGTGATGAAGAGGACAACTCGTCATCGAAAGAGTCGTCTTTATCGCAGTCGGATTCAGATGCTGATGAAGATGGTGGTGAGGCAAAAGCAAGCTTTCGAGTTAAAGCTGGACGGTCCTCTAAAGAAAAAGACACTGAAGTCAAATCTGGAAAGCGGAAGAGCATTGCTGTGGACTTTGATACATTGAAACGCCACGGCTACAAAGGCGGTCCATCAATCTTGAAAGTGCCACCGCCCAAAGAGAATGAGAAGCAAGATTGGTCATGGTCTACTGGTAGGGAGACTCGTGAAAACAGAAACACTGAAGAATCGTATGAAGAGAGACAGAAAACGAGGGCTGCTTTAGAAAATGGCGAGCAGCTGCTAACCGCGCTAACTCGGAAGGAGAAGAAGAATATATCCTTCTCCCAGAAGGAAAAGAGGAAAAGAGAGCTTGGTCAAGCAAGCAGGGGGAAAAACTATGTCGAGGAAGAAAAGAGAACGTTGAGGGAAAGTGGCATCTACTCTGGTTTTGATACCTGACTTTTCCCATTTCAACTAATATTTAACAATCCATTTCATGTCAAAGCTTCATGTTGCAAGATCATCCTTGTAGCGGACTGTATTAATTACCTCCAACAACAAGCAGCTGACAGGAACCAATGTCTAGTGCATTACGAAATATCAACTATCCTTATACATTTCGGGACGAGAACTGTATGTAAAGGAAACGATCATCTTCATGCTTTTCCGGTACATATGAAAATAGGGTATAGCTGATCTTGTACCATTTAACGCTAGCATACTGGATATTCAGTTGTATCATGTTATGTTTTATGGTCATTGATAAAAACATCTTCAATATCCCAACAGGTTGTATATGACAGTGAAAGAAGCTGTTTATCACCAA

Coding sequence (CDS)

ATGAAAAGGGCAATGCCATGGAGTGATGAAGAGGACAACTCGTCATCGAAAGAGTCGTCTTTATCGCAGTCGGATTCAGATGCTGATGAAGATGGTGGTGAGGCAAAAGCAAGCTTTCGAGTTAAAGCTGGACGGTCCTCTAAAGAAAAAGACACTGAAGTCAAATCTGGAAAGCGGAAGAGCATTGCTGTGGACTTTGATACATTGAAACGCCACGGCTACAAAGGCGGTCCATCAATCTTGAAAGTGCCACCGCCCAAAGAGAATGAGAAGCAAGATTGGTCATGGTCTACTGGTAGGGAGACTCGTGAAAACAGAAACACTGAAGAATCGTATGAAGAGAGACAGAAAACGAGGGCTGCTTTAGAAAATGGCGAGCAGCTGCTAACCGCGCTAACTCGGAAGGAGAAGAAGAATATATCCTTCTCCCAGAAGGAAAAGAGGAAAAGAGAGCTTGGTCAAGCAAGCAGGGGGAAAAACTATGTCGAGGAAGAAAAGAGAACGTTGAGGGAAAGTGGCATCTACTCTGGTTTTGATACCTGA

Protein sequence

MKRAMPWSDEEDNSSSKESSLSQSDSDADEDGGEAKASFRVKAGRSSKEKDTEVKSGKRKSIAVDFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQKTRAALENGEQLLTALTRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT

Homology

[Close]

BLAST of Sed0008482 vs. NCBI nr
Match: XP_022991319.1 (UPF0690 protein C1orf52 homolog [Cucurbita maxima] >XP_023547485.1 UPF0690 protein C1orf52 homolog [Cucurbita pepo subsp. pepo] >XP_023547486.1 UPF0690 protein C1orf52 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.9 bits (816), Expect = 2.7e-83
Identity = 173/180 (96.11%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDGGEAKASFRVKAGRSSKEKDTEVKSGKRK 60
           MKRAMPWSDEEDNSSSKESSLSQSDSDADED G+AKA FRVKAGRSSKEK TEVKSGKRK
Sbjct: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDSGDAKAIFRVKAGRSSKEKGTEVKSGKRK 60

Query: 61  SIAVDFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQKTRA 120
           SIAVDFDTLKRHGYKGGPS+LKVPPPKENEKQDWSWSTGRETRENR TEESYEERQKTRA
Sbjct: 61  SIAVDFDTLKRHGYKGGPSVLKVPPPKENEKQDWSWSTGRETRENRETEESYEERQKTRA 120

Query: 121 ALENGEQLLTALTRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT 180
           ALENGEQLLTALT+KEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT
Sbjct: 121 ALENGEQLLTALTQKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT 180

[Close]

BLAST of Sed0008482 vs. NCBI nr
Match: XP_022953507.1 (UPF0690 protein C1orf52 homolog [Cucurbita moschata] >KAG7014460.1 hypothetical protein SDJN02_24637 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.2 bits (814), Expect = 4.7e-83
Identity = 172/180 (95.56%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDGGEAKASFRVKAGRSSKEKDTEVKSGKRK 60
           MKRAMPWSDEEDNSSSKESSLSQSDSDADED G+AKA FRVKAGRSSKEK TEVKSGKRK
Sbjct: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDSGDAKAIFRVKAGRSSKEKGTEVKSGKRK 60

Query: 61  SIAVDFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQKTRA 120
           +IAVDFDTLKRHGYKGGPS+LKVPPPKENEKQDWSWSTGRETRENR+TEESYEERQKTRA
Sbjct: 61  NIAVDFDTLKRHGYKGGPSVLKVPPPKENEKQDWSWSTGRETRENRDTEESYEERQKTRA 120

Query: 121 ALENGEQLLTALTRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT 180
           ALENGEQLLTALT+KEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT
Sbjct: 121 ALENGEQLLTALTQKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT 180

[Close]

BLAST of Sed0008482 vs. NCBI nr
Match: KAG6575926.1 (hypothetical protein SDJN03_26565, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 310.8 bits (795), Expect = 7.5e-81
Identity = 168/176 (95.45%), Postives = 173/176 (98.30%), Query Frame = 0


Query: 5   MPWSDEEDNSSSKESSLSQSDSDADEDGGEAKASFRVKAGRSSKEKDTEVKSGKRKSIAV 64
           MPWSDEEDNSSSKESSLSQSDSDADED G+AKA FRVKAGRSSKEK TEVKSGKRK+IAV
Sbjct: 1   MPWSDEEDNSSSKESSLSQSDSDADEDSGDAKAIFRVKAGRSSKEKGTEVKSGKRKNIAV 60

Query: 65  DFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQKTRAALEN 124
           DFDTLKRHGYKGGPS+LKVPPPKENEKQDWSWSTGRETRENR+TEESYEERQKTRAALEN
Sbjct: 61  DFDTLKRHGYKGGPSVLKVPPPKENEKQDWSWSTGRETRENRDTEESYEERQKTRAALEN 120

Query: 125 GEQLLTALTRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT 181
           GEQLLTALT+KEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT
Sbjct: 121 GEQLLTALTQKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT 176

[Close]

BLAST of Sed0008482 vs. NCBI nr
Match: XP_022150145.1 (UPF0690 protein C1orf52 homolog [Momordica charantia] >XP_022150146.1 UPF0690 protein C1orf52 homolog [Momordica charantia])

HSP 1 Score: 298.5 bits (763), Expect = 3.8e-77
Identity = 164/181 (90.61%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDGGEAKASFRVKA-GRSSKEKDTEVKSGKR 60
           MKR MPWSDEEDNSSSK+SSLSQSDSDADED GE KASFRVKA GRSSKEKDT+VKS KR
Sbjct: 1   MKRPMPWSDEEDNSSSKDSSLSQSDSDADEDSGETKASFRVKAGGRSSKEKDTQVKSAKR 60

Query: 61  KSIAVDFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQKTR 120
           KS AVDF+ LKRHGYKGGPS+L VPPPKENEKQDWSWS G+ETRENR TEESYEERQKTR
Sbjct: 61  KSTAVDFNALKRHGYKGGPSVLNVPPPKENEKQDWSWSNGKETRENRETEESYEERQKTR 120

Query: 121 AALENGEQLLTALTRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFD 180
           AALENGEQLLTA TRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKR LRESGIYSGFD
Sbjct: 121 AALENGEQLLTAQTRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRMLRESGIYSGFD 180

[Close]

BLAST of Sed0008482 vs. NCBI nr
Match: XP_038896833.1 (UPF0690 protein C1orf52 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 293.1 bits (749), Expect = 1.6e-75
Identity = 166/189 (87.83%), Postives = 170/189 (89.95%), Query Frame = 0


Query: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDGGEAKASFRVKAGRSSKEKDTEVKS-GKR 60
           MKRA+PWSDEEDNS    SSLSQSDSDADED GE KASFRVKAGRSSKEKD EVKS GKR
Sbjct: 1   MKRAIPWSDEEDNS----SSLSQSDSDADEDNGETKASFRVKAGRSSKEKDVEVKSGGKR 60

Query: 61  KSIAVDFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQKTR 120
           KS+AVDFDTLKRHGYKGGPS+LKVPPPKENEKQDWSWSTGRETRENR TEESYEERQKTR
Sbjct: 61  KSVAVDFDTLKRHGYKGGPSVLKVPPPKENEKQDWSWSTGRETRENRETEESYEERQKTR 120

Query: 121 AALENGEQLLTALTR--------KEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRE 180
           AALENGEQLLTA TR        KEKKN+SFSQKEKRKRELGQASRGKNYVEEEKR LRE
Sbjct: 121 AALENGEQLLTAQTRKEKEKEKEKEKKNVSFSQKEKRKRELGQASRGKNYVEEEKRMLRE 180

[Close]

BLAST of Sed0008482 vs. ExPASy TrEMBL
Match: A0A6J1JUH2 (UPF0690 protein C1orf52 homolog OS=Cucurbita maxima OX=3661 GN=LOC111488002 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 173/180 (96.11%), Postives = 176/180 (97.78%), Query Frame = 0


Query: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDGGEAKASFRVKAGRSSKEKDTEVKSGKRK 60
           MKRAMPWSDEEDNSSSKESSLSQSDSDADED G+AKA FRVKAGRSSKEK TEVKSGKRK
Sbjct: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDSGDAKAIFRVKAGRSSKEKGTEVKSGKRK 60

Query: 61  SIAVDFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQKTRA 120
           SIAVDFDTLKRHGYKGGPS+LKVPPPKENEKQDWSWSTGRETRENR TEESYEERQKTRA
Sbjct: 61  SIAVDFDTLKRHGYKGGPSVLKVPPPKENEKQDWSWSTGRETRENRETEESYEERQKTRA 120

Query: 121 ALENGEQLLTALTRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT 180
           ALENGEQLLTALT+KEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT
Sbjct: 121 ALENGEQLLTALTQKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT 180

[Close]

BLAST of Sed0008482 vs. ExPASy TrEMBL
Match: A0A6J1GNF0 (UPF0690 protein C1orf52 homolog OS=Cucurbita moschata OX=3662 GN=LOC111456036 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.3e-83
Identity = 172/180 (95.56%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDGGEAKASFRVKAGRSSKEKDTEVKSGKRK 60
           MKRAMPWSDEEDNSSSKESSLSQSDSDADED G+AKA FRVKAGRSSKEK TEVKSGKRK
Sbjct: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDSGDAKAIFRVKAGRSSKEKGTEVKSGKRK 60

Query: 61  SIAVDFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQKTRA 120
           +IAVDFDTLKRHGYKGGPS+LKVPPPKENEKQDWSWSTGRETRENR+TEESYEERQKTRA
Sbjct: 61  NIAVDFDTLKRHGYKGGPSVLKVPPPKENEKQDWSWSTGRETRENRDTEESYEERQKTRA 120

Query: 121 ALENGEQLLTALTRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT 180
           ALENGEQLLTALT+KEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT
Sbjct: 121 ALENGEQLLTALTQKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFDT 180

[Close]

BLAST of Sed0008482 vs. ExPASy TrEMBL
Match: A0A6J1DAL0 (UPF0690 protein C1orf52 homolog OS=Momordica charantia OX=3673 GN=LOC111018397 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.9e-77
Identity = 164/181 (90.61%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDGGEAKASFRVKA-GRSSKEKDTEVKSGKR 60
           MKR MPWSDEEDNSSSK+SSLSQSDSDADED GE KASFRVKA GRSSKEKDT+VKS KR
Sbjct: 1   MKRPMPWSDEEDNSSSKDSSLSQSDSDADEDSGETKASFRVKAGGRSSKEKDTQVKSAKR 60

Query: 61  KSIAVDFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQKTR 120
           KS AVDF+ LKRHGYKGGPS+L VPPPKENEKQDWSWS G+ETRENR TEESYEERQKTR
Sbjct: 61  KSTAVDFNALKRHGYKGGPSVLNVPPPKENEKQDWSWSNGKETRENRETEESYEERQKTR 120

Query: 121 AALENGEQLLTALTRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIYSGFD 180
           AALENGEQLLTA TRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKR LRESGIYSGFD
Sbjct: 121 AALENGEQLLTAQTRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRMLRESGIYSGFD 180

[Close]

BLAST of Sed0008482 vs. ExPASy TrEMBL
Match: A0A5D3DRL7 (UPF0690 protein C1orf52-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00990 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.6e-75
Identity = 164/191 (85.86%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDGGEAKASFRVKAGRSSKEKDTEVKS-GKR 60
           MKRAMPWSDEEDNS    SSLSQSDSD DED GE KASFRVK GRSSKEKDTEVKS GKR
Sbjct: 1   MKRAMPWSDEEDNS----SSLSQSDSDGDEDNGETKASFRVKGGRSSKEKDTEVKSGGKR 60

Query: 61  KSIAVDFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQKTR 120
           KS+AVDFDTL+RHGY+GGPS+LKVPPPKENEKQDWSWSTGRETRENR TEESYEERQKTR
Sbjct: 61  KSVAVDFDTLQRHGYRGGPSVLKVPPPKENEKQDWSWSTGRETRENRETEESYEERQKTR 120

Query: 121 AALENGEQLLTALTRK----------EKKNISFSQKEKRKRELGQASRGKNYVEEEKRTL 180
           AALENGEQLLTA TRK          EKKN+SFSQKEKRKRELGQASRGKNYVEEEKR L
Sbjct: 121 AALENGEQLLTAQTRKEKEREKEKEREKKNVSFSQKEKRKRELGQASRGKNYVEEEKRML 180

[Close]

BLAST of Sed0008482 vs. ExPASy TrEMBL
Match: A0A1S3BRX7 (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103492638 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.6e-75
Identity = 164/191 (85.86%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MKRAMPWSDEEDNSSSKESSLSQSDSDADEDGGEAKASFRVKAGRSSKEKDTEVKS-GKR 60
           MKRAMPWSDEEDNS    SSLSQSDSD DED GE KASFRVK GRSSKEKDTEVKS GKR
Sbjct: 1   MKRAMPWSDEEDNS----SSLSQSDSDGDEDNGETKASFRVKGGRSSKEKDTEVKSGGKR 60

Query: 61  KSIAVDFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQKTR 120
           KS+AVDFDTL+RHGY+GGPS+LKVPPPKENEKQDWSWSTGRETRENR TEESYEERQKTR
Sbjct: 61  KSVAVDFDTLQRHGYRGGPSVLKVPPPKENEKQDWSWSTGRETRENRETEESYEERQKTR 120

Query: 121 AALENGEQLLTALTRK----------EKKNISFSQKEKRKRELGQASRGKNYVEEEKRTL 180
           AALENGEQLLTA TRK          EKKN+SFSQKEKRKRELGQASRGKNYVEEEKR L
Sbjct: 121 AALENGEQLLTAQTRKEKEREKEKEREKKNVSFSQKEKRKRELGQASRGKNYVEEEKRML 180

[Close]

BLAST of Sed0008482 vs. TAIR 10
Match: AT4G04614.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-30
Identity = 88/185 (47.57%), Postives = 120/185 (64.86%), Query Frame = 0


Query: 2   KRAMPWSDEED----NSSSKESSLSQSDSDADE-DGGEAKASFRVKAGRSSKEKDTEVKS 61
           K  M W D++D    +SS + SS S SDS+ D  + GE K        +  K K    + 
Sbjct: 3   KGLMRWDDDDDDDDEDSSEESSSSSASDSNVDNTEIGEKK--------KKRKSKKPIARF 62

Query: 62  GKRKSIAVDFDTLKRHGYKGGPSILKVPPPKENEKQDWSWSTGRETRENRNTEESYEERQ 121
            K+   A D+++L++HGYK    +  +P P   EKQDWSW+TG++ +     +ESY+ER+
Sbjct: 63  AKKDKKAFDYESLQQHGYK-AVGLSDIPAPM--EKQDWSWTTGKDKQRVEEVKESYQERE 122

Query: 122 KTR-AALENGEQLLTALTRKEKKNISFSQKEKRKRELGQASRGKNYVEEEKRTLRESGIY 181
            TR AA+  GE +  A  R ++KN+SFSQKEK+KR+LGQASRGKNYVEEEKR LRESG+Y
Sbjct: 123 ATRAAAVTGGETIANAQLRNDRKNLSFSQKEKKKRDLGQASRGKNYVEEEKRQLRESGVY 176

The following BLAST results are available for this feature:

BLAST of Sed0008482 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991319.1	2.7e-83	96.11	UPF0690 protein C1orf52 homolog [Cucurbita maxima] >XP_023547485.1 UPF0690 prote...	[more]
XP_022953507.1	4.7e-83	95.56	UPF0690 protein C1orf52 homolog [Cucurbita moschata] >KAG7014460.1 hypothetical ...	[more]
KAG6575926.1	7.5e-81	95.45	hypothetical protein SDJN03_26565, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022150145.1	3.8e-77	90.61	UPF0690 protein C1orf52 homolog [Momordica charantia] >XP_022150146.1 UPF0690 pr...	[more]
XP_038896833.1	1.6e-75	87.83	UPF0690 protein C1orf52 homolog isoform X1 [Benincasa hispida]	[more]

BLAST of Sed0008482 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0008482 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUH2	1.3e-83	96.11	UPF0690 protein C1orf52 homolog OS=Cucurbita maxima OX=3661 GN=LOC111488002 PE=4...	[more]
A0A6J1GNF0	2.3e-83	95.56	UPF0690 protein C1orf52 homolog OS=Cucurbita moschata OX=3662 GN=LOC111456036 PE...	[more]
A0A6J1DAL0	1.9e-77	90.61	UPF0690 protein C1orf52 homolog OS=Momordica charantia OX=3673 GN=LOC111018397 P...	[more]
A0A5D3DRL7	6.6e-75	85.86	UPF0690 protein C1orf52-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BRX7	6.6e-75	85.86	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103492638 PE=4 SV=1	[more]

BLAST of Sed0008482 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04614.1	1.7e-30	47.57	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR31833	UPF0690 PROTEIN C1ORF52	coord: 1..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008482.1	Sed0008482.1	mRNA