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Sed0008447 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTACTCTCTCTCTCTCTCTAAATTCAATATTATTACAATTAATATTTCTTATATATATATATATATATATTTATAATAATGTCTACCAGAAGATCATCATCATCATCATCTCGCTCCAGAAACAACGGCTCAGCTAATTCTCAAATTTCTGACCGTCAAATCTCTGACCTTGTTTCCAAGTTGCAATGCCTCATCCCTGAGATTCGTAACTCCCCTTCCCATAAGGTCTGTATAAATTATTTCACATCGAGTAGAGCTGTAGTGTGACATCATATATGATTTCGTAACCGAGAGGTTACGAGTTCGAATCTCTTACATTAATTATCCTTCGAACCCTAAAAAATCATCTTCCTGACATTGTCTTACATTGCTTATTAACTTCCTCTGCCGACATGTCCCCTTGTGGGACTCTTATTGTTCCCCCTCATCCATCATTCCACCTGCTTTAGTTTTTTCTTAAAATTATTTACAATAATTATTGATGTATTTTTTTTTTTGCTTTTCCTCATTTCTCTCCTTCATGTTGTAACAACTTGATTGTTTTAATTTAGGCTAACGTCATTATTACATGATCATAAAGGCTGTTCAAACTAAATTAAATCTCGGAAAAAGACACAATCATATATATATATATATACCATATTCATTATTTACCATAATTTATTAGATAGTTTAGGTGTCCGTTTTAAAATCAATTGACGATGAGATGAATAATCTATTTATCTTATGAATGCTTAAGGACCCTCTTAACTTATATTATCAGTGAGATGTTAATATAGTCAATAATACTCAATGAATTTTGCTTCTCTTTTTTCCCAAACTAAAACTTTTCCTTTTGAACTTTTATCATGCATTTCTATCTCATACTTGTCTTTATCAAGATCATTAAATTTAAAATATCTTTTCTATAATAGAAAAGGTAAGATTTATAGCTATTTTTCACGTGTTGTTTACTTCAAATTAGAGTAGATAAAGTTCATGGATAAGATTAGGGTTGCATTATGGATCGATACATCTTCTTCCATCTCTAATCTGAGTTCCATATTGAACCTTTGATAATTTATTTTTTTTAAAATCTTATTCATTAAAAAATTAATATTTTCTCGATAGCTATGATATAGAATAAACCAAATTCTCTATGGTTAAAAACACAAATATCCTTCCTTTCATATGTTAAACTTCTTATGAATAATTAAAACCATGATATTATAACATAAAACTTGTATTTAATCACTTTTTTTTTTGTGTGTAGGTGTCAGCTTCTAATGTGTTACAAGAAATATGCAATTACATAAGAAACTTACATAGGGAGGTGGATGATTTGAGTGAACGTTTGTCGCAACTTTTGGCTGCCACAGAAAATGACAGTGCTGAGGCTGCTATTATAAGGACTTTATTCATTAATTAATTAATTAATAATCACTCTTTTCCAATTCCCTACTTGTGACGACG TTTTACTCTCTCTCTCTCTCTAAATTCAATATTATTACAATTAATATTTCTTATATATATATATATATATATTTATAATAATGTCTACCAGAAGATCATCATCATCATCATCTCGCTCCAGAAACAACGGCTCAGCTAATTCTCAAATTTCTGACCGTCAAATCTCTGACCTTGTTTCCAAGTTGCAATGCCTCATCCCTGAGATTCGTAACTCCCCTTCCCATAAGGTGTCAGCTTCTAATGTGTTACAAGAAATATGCAATTACATAAGAAACTTACATAGGGAGGTGGATGATTTGAGTGAACGTTTGTCGCAACTTTTGGCTGCCACAGAAAATGACAGTGCTGAGGCTGCTATTATAAGGACTTTATTCATTAATTAATTAATTAATAATCACTCTTTTCCAATTCCCTACTTGTGACGACG ATGTCTACCAGAAGATCATCATCATCATCATCTCGCTCCAGAAACAACGGCTCAGCTAATTCTCAAATTTCTGACCGTCAAATCTCTGACCTTGTTTCCAAGTTGCAATGCCTCATCCCTGAGATTCGTAACTCCCCTTCCCATAAGGTGTCAGCTTCTAATGTGTTACAAGAAATATGCAATTACATAAGAAACTTACATAGGGAGGTGGATGATTTGAGTGAACGTTTGTCGCAACTTTTGGCTGCCACAGAAAATGACAGTGCTGAGGCTGCTATTATAAGGACTTTATTCATTAATTAA MSTRRSSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFIN Homology
BLAST of Sed0008447 vs. NCBI nr
Match: XP_022946595.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_022999784.1 transcription factor PRE6-like [Cucurbita maxima] >XP_022999785.1 transcription factor PRE6-like [Cucurbita maxima] >KAG6599062.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030000.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 134.4 bits (337), Expect = 5.3e-28 Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 0
BLAST of Sed0008447 vs. NCBI nr
Match: XP_023546056.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 134.0 bits (336), Expect = 7.0e-28 Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 0
BLAST of Sed0008447 vs. NCBI nr
Match: XP_008465587.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo] >KAA0036447.1 transcription factor PRE6-like [Cucumis melo var. makuwa] >TYK00039.1 transcription factor PRE6-like [Cucumis melo var. makuwa]) HSP 1 Score: 128.6 bits (322), Expect = 2.9e-26 Identity = 75/95 (78.95%), Postives = 83/95 (87.37%), Query Frame = 0
BLAST of Sed0008447 vs. NCBI nr
Match: XP_004146747.1 (transcription factor PRE6 [Cucumis sativus] >KGN47805.1 hypothetical protein Csa_003742 [Cucumis sativus]) HSP 1 Score: 125.6 bits (314), Expect = 2.5e-25 Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 0
BLAST of Sed0008447 vs. NCBI nr
Match: XP_038886241.1 (transcription factor PRE6-like [Benincasa hispida]) HSP 1 Score: 124.4 bits (311), Expect = 5.5e-25 Identity = 76/95 (80.00%), Postives = 81/95 (85.26%), Query Frame = 0
BLAST of Sed0008447 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 3.4e-25 Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 0
BLAST of Sed0008447 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 5.0e-21 Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 0
BLAST of Sed0008447 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 5.0e-21 Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 0
BLAST of Sed0008447 vs. ExPASy Swiss-Prot
Match: A2Z730 (Transcription factor ILI7 OS=Oryza sativa subsp. indica OX=39946 GN=ILI7 PE=3 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 1.6e-19 Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0
BLAST of Sed0008447 vs. ExPASy Swiss-Prot
Match: Q338G6 (Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 6.1e-19 Identity = 51/90 (56.67%), Postives = 70/90 (77.78%), Query Frame = 0
BLAST of Sed0008447 vs. ExPASy TrEMBL
Match: A0A6J1KGK3 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111494030 PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 2.6e-28 Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 0
BLAST of Sed0008447 vs. ExPASy TrEMBL
Match: A0A6J1G4C0 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450613 PE=4 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 2.6e-28 Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 0
BLAST of Sed0008447 vs. ExPASy TrEMBL
Match: A0A5D3BPI2 (Transcription factor PRE6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00850 PE=4 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 1.4e-26 Identity = 75/95 (78.95%), Postives = 83/95 (87.37%), Query Frame = 0
BLAST of Sed0008447 vs. ExPASy TrEMBL
Match: A0A1S3CPL2 (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103503223 PE=4 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 1.4e-26 Identity = 75/95 (78.95%), Postives = 83/95 (87.37%), Query Frame = 0
BLAST of Sed0008447 vs. ExPASy TrEMBL
Match: A0A0A0KDL6 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G404200 PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 1.2e-25 Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 0
BLAST of Sed0008447 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 115.5 bits (288), Expect = 2.4e-26 Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 0
BLAST of Sed0008447 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 ) HSP 1 Score: 92.4 bits (228), Expect = 2.2e-19 Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 0
BLAST of Sed0008447 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 ) HSP 1 Score: 92.4 bits (228), Expect = 2.2e-19 Identity = 54/90 (60.00%), Postives = 71/90 (78.89%), Query Frame = 0
BLAST of Sed0008447 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein ) HSP 1 Score: 91.7 bits (226), Expect = 3.7e-19 Identity = 59/100 (59.00%), Postives = 71/100 (71.00%), Query Frame = 0
BLAST of Sed0008447 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein ) HSP 1 Score: 89.7 bits (221), Expect = 1.4e-18 Identity = 58/100 (58.00%), Postives = 70/100 (70.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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