Sed0008349 (gene) Chayote v1

Overview


Name	Sed0008349
Type	gene
Organism	Sechium edule (Chayote v1)
Description	rRNA 2'-O-methyltransferase fibrillarin
Location	LG07: 7305188 .. 7308433 (-)
RNA-Seq Expression	Sed0008349
Synteny	Sed0008349

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGTTTGGCACCGCAGTGCTTATAAATGTAAAACCCCAAACTAGGGTTTCTCGCTTCGTCTCTTTGCTCAATCGTTCTAAAACCCTAACGGAAACTTTCATTCGGCGCTCGCCCTTTCTCTCTCAGTAGCCGAAATGAGACCTCCTCGAGGTACATTCAAGAACAATCCGCGCTTGTACTACTTTATTTTTCGATTTTCTTTTTGTTGGATTATGAAAAATCTCTGTAGAATATGTTGAAGAACAATGCTTGTTTGAATTCATACTACTCCAAATCTAATTTCTAAATCATCCTTGGTCGGTTGTTAGATTTTTGCTGTTGTTCGTTTTGTTGCATTTTTGTTAAAATGGAGTACATTGGGTTTGTGCAGGACGCGGTGGTGGTGGTGGATTCAGGGGAAGGGGTGATGGAGGAAGAGGAGGTGGTAGAGGCAGAGGCGGCGGCGGAGGTAGAGGCGGCGGTGGAGGCCGAGGCGGTGGCCGTGGCGGTGGGAGAGGTCGCGGCGGTGGAAGGGGGGGTGGTATGAAGGGTGGAAGCAAGGTTATCGTTGAACCCCACAGACACGAAGGTATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTCACTAAGAACATGGTCTCTGGGGAATCTGTCTATAACGAGAAAAGAATATCCGTACAGGTGATTTGCGTATATCACTAATCTTAATCTTAGAATGCTTGTTGCTGAAAGCTTTAATAGTTTCAATGAGTGTTTGATGAAAAACTTTGACGATTAGTATTTGATCTGTTTTTCCCCAGTGGGTAAGTTGGCAATAATCTTATGTAGTAAGTTTTTGGGTGGTTCTTGTTTTTTAGTTGTTATTGCTTGTAATTACTTTCCTGGCTCTGTTCATTGGTGTTCTTGGAACTTGTAAGTTATCTGCCTAGTTTAATGTTTATGCTGTCTTTCCAGAATGAAGATGGAACAAAAGTTGAGTATAGGGTTTGGAACCCATTTAGGTCTAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATATGGATTGTAAGTTTTTTACACCTCCAACTTTGAGGCCCTAGTTTTTTATTTGTTTACTTTTTGTTTTTTTTTCTCATATCTAATTTGTTAATGCATCTATTGTAGAAACCTGGTGCTCGAGTGTTGTATCTTGGTGCTGCTTCAGGAACAACTGTATCTCATGTCTCAGATGTTGTTGGCCCTGTAAGTAGTTATTTTGTGAGTATCTTTAGTTGTTTACAGAAGTGATACAATTGTTTTTTATTTGACTTGCAGACTGGTATAGTGTATGCTGTTGAATTCTCTCATAGAAGTGGTAGAGATTTAGTGAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAGTACCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCAGATGTTGCTCAGCCAGATCAGGTCAACTTTTTTTCTTTTTCTGATTTATCTGTGTATTTTTCGTTTGTATTTAGTTGAAATGTGATGGACCTGTTCTTTTTTCATGTAACATATAGAATCAAACTTGTTGTTTCATATTTCCTGTACTAACCCTGTAAAGCTTTTAATTGATAACAATTCATTTGCTTTCCTTCAATTTATGCTTTAAATCCTATTTCATTTGAAATTAGCATATGATGAGTTTCTCGGATTCCCTTTCAAGACTTCTTGAATGATGCACAACCCGAGTTTCTGATGCTTGAAGAAGCTTTTGAATTATTATTATTATCTTTTATTTTAAAAAATAATTTCTGTTTTCATCCCTCTTTTCTCTAATATTTGTCAATGAGAGTGTATCAAGTCCATCAAATTTTATTTGAGGTTTCAACTTCATTTTATTACTTGCATGAAATTTTTTTGTAATACTGTGACTCATTCATTTCCATTTTATTAGTTCTTTCCATTGTTTTCTGAGCATGCAATTCAGTAATCTGAATCTTGTAGGGCTCACTGGTTCCTCTACATTTTTTCATTTTATTATTCTCCATAATACCTGTGTTGAATGCTGTTTTTGCTGTAATTCAGATGATGCGGCTTTGTTGTTCTCTATTTATGTTTATATCTTGACGTTAGTATAATATTTTTCCATTCTGCTTAATCAATCTGTGGTGCTTACTATGCTAAATTTGTAATGATCTACCCGTGTATACTTCATGTGGAGGTTTTTAGATTCTAGCGTGACGTAGTTAAAAGAAGAATGAACTAGATTACATTTTCTTTTTCAGATCCTCTGGTTTATTGATAGTGAGAAATAACCTAATTGTTGTGTCCTATATATCTTAAACTCTCTTCCTAATTTTCAACTTCATATTATTTTTACTTAATGATTTTATTCTCACTTCTGGATATCCTGCAGGTATATTTGATAGTGAACATAGAGTTATTATCATGTTTCTACGGTTTACACATGTGATGAATTACTCGGATTCCCCTTCAAGACTTCTTGAATGATGCACAACCCGAGTTTCTGATGTGTTCAAGAATACCACATTTTTATTTACCCCTAATTAGTTTTGCACTCTTGCTCGTCCAATTATGTAAACCTGTGAACTTGCCTACATGTTGGTTCTTATATTGATCTCTCTTTAACTTTATTTTTCAATGCAGGCAAGAATTTTAGCACTTAATGCATCATATTTTCTCAAAGCCGGTGGCCACTTTGTCATATCGATCAAGGTGGGGGACATAGTTTCAATATTGTTTGTAAAGGCAAAGTCTGTAATGTATATAATATGATATGATATATTTCATTATGAACTTTTGCAGGCCAACTGTATCGACTCGACTGTTCCGGCAGAGGCTGTGTTTGCAAGTGAAGTGAATAAGCTGAAGGCAGACCAGTTCAAACCCAGTGAACAAGTCACTCTTGAACCGTTCGAGCGCGACCATGCTTGTGTTGTTGGTACCTATCGGGCGCCGAAGAAACAGAAGCCTGCGGCATAGGCAGTTCTTTGAGCAACCAACCAGGGTTTGAGATTATTAAGCTTATAGCTGTAGTTTATCCATGGACCTTACTGCGCTTGTAGCAAAAATCATTTTAAAATTCTAATTTGCGAGTAAGAGCTTTGTTTTCTATAATTTTGGTGTCTTGTCTTGGTGGAATATGTTAAATTACTTTTCTATTGTGAAATTATGTTTTCTTTTTTGTCTTATTTCCATCTTTTTACATTTTTTAAAAATATATTCATGGGTCTTTTATTGGAAGTTCA

mRNA sequence

CCTGTTTGGCACCGCAGTGCTTATAAATGTAAAACCCCAAACTAGGGTTTCTCGCTTCGTCTCTTTGCTCAATCGTTCTAAAACCCTAACGGAAACTTTCATTCGGCGCTCGCCCTTTCTCTCTCAGTAGCCGAAATGAGACCTCCTCGAGGACGCGGTGGTGGTGGTGGATTCAGGGGAAGGGGTGATGGAGGAAGAGGAGGTGGTAGAGGCAGAGGCGGCGGCGGAGGTAGAGGCGGCGGTGGAGGCCGAGGCGGTGGCCGTGGCGGTGGGAGAGGTCGCGGCGGTGGAAGGGGGGGTGGTATGAAGGGTGGAAGCAAGGTTATCGTTGAACCCCACAGACACGAAGGTATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTCACTAAGAACATGGTCTCTGGGGAATCTGTCTATAACGAGAAAAGAATATCCGTACAGAATGAAGATGGAACAAAAGTTGAGTATAGGGTTTGGAACCCATTTAGGTCTAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATATGGATTAAACCTGGTGCTCGAGTGTTGTATCTTGGTGCTGCTTCAGGAACAACTGTATCTCATGTCTCAGATGTTGTTGGCCCTACTGGTATAGTGTATGCTGTTGAATTCTCTCATAGAAGTGGTAGAGATTTAGTGAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAGTACCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCAGATGTTGCTCAGCCAGATCAGGCAAGAATTTTAGCACTTAATGCATCATATTTTCTCAAAGCCGGTGGCCACTTTGTCATATCGATCAAGGCCAACTGTATCGACTCGACTGTTCCGGCAGAGGCTGTGTTTGCAAGTGAAGTGAATAAGCTGAAGGCAGACCAGTTCAAACCCAGTGAACAAGTCACTCTTGAACCGTTCGAGCGCGACCATGCTTGTGTTGTTGGTACCTATCGGGCGCCGAAGAAACAGAAGCCTGCGGCATAGGCAGTTCTTTGAGCAACCAACCAGGGTTTGAGATTATTAAGCTTATAGCTGTAGTTTATCCATGGACCTTACTGCGCTTGTAGCAAAAATCATTTTAAAATTCTAATTTGCGAGTAAGAGCTTTGTTTTCTATAATTTTGGTGTCTTGTCTTGGTGGAATATGTTAAATTACTTTTCTATTGTGAAATTATGTTTTCTTTTTTGTCTTATTTCCATCTTTTTACATTTTTTAAAAATATATTCATGGGTCTTTTATTGGAAGTTCA

Coding sequence (CDS)

ATGAGACCTCCTCGAGGACGCGGTGGTGGTGGTGGATTCAGGGGAAGGGGTGATGGAGGAAGAGGAGGTGGTAGAGGCAGAGGCGGCGGCGGAGGTAGAGGCGGCGGTGGAGGCCGAGGCGGTGGCCGTGGCGGTGGGAGAGGTCGCGGCGGTGGAAGGGGGGGTGGTATGAAGGGTGGAAGCAAGGTTATCGTTGAACCCCACAGACACGAAGGTATTTTCATTGCCAAGGGTAAAGAAGATGCTCTTGTCACTAAGAACATGGTCTCTGGGGAATCTGTCTATAACGAGAAAAGAATATCCGTACAGAATGAAGATGGAACAAAAGTTGAGTATAGGGTTTGGAACCCATTTAGGTCTAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATATGGATTAAACCTGGTGCTCGAGTGTTGTATCTTGGTGCTGCTTCAGGAACAACTGTATCTCATGTCTCAGATGTTGTTGGCCCTACTGGTATAGTGTATGCTGTTGAATTCTCTCATAGAAGTGGTAGAGATTTAGTGAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGACACCCAGCCAAGTACCGAATGTTGGTTGGTATGGTGGATGTGATATTTTCAGATGTTGCTCAGCCAGATCAGGCAAGAATTTTAGCACTTAATGCATCATATTTTCTCAAAGCCGGTGGCCACTTTGTCATATCGATCAAGGCCAACTGTATCGACTCGACTGTTCCGGCAGAGGCTGTGTTTGCAAGTGAAGTGAATAAGCTGAAGGCAGACCAGTTCAAACCCAGTGAACAAGTCACTCTTGAACCGTTCGAGCGCGACCATGCTTGTGTTGTTGGTACCTATCGGGCGCCGAAGAAACAGAAGCCTGCGGCATAG

Protein sequence

MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGGRGGGRGGGRGRGGGRGGGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPKKQKPAA

Homology

[Close]

BLAST of Sed0008349 vs. NCBI nr
Match: XP_022141240.1 (mediator of RNA polymerase II transcription subunit 36a-like [Momordica charantia])

HSP 1 Score: 532.3 bits (1370), Expect = 2.6e-147
Identity = 296/306 (96.73%), Postives = 299/306 (97.71%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGG-----RGGGRGGGRGRGGGRGG 60
           MRPPRGRGGGGGFRGRGDGGR GGRGRGGGGGRGGGGG     RGGGRGGGRGRGGGRGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGR-GGRGRGGGGGRGGGGGRGMASRGGGRGGGRGRGGGRGG 60

Query: 61  GMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 120
           GMKGGSKV++EPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW
Sbjct: 61  GMKGGSKVVIEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 120

Query: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180
           NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG
Sbjct: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180

Query: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240
           RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG
Sbjct: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240

Query: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPK 300
           GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKP+EQVTLEPFERDHACVVG YRAPK
Sbjct: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPK 300

Query: 301 KQKPAA 302
           KQKPAA
Sbjct: 301 KQKPAA 305

[Close]

BLAST of Sed0008349 vs. NCBI nr
Match: XP_022984980.1 (probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita maxima] >KAG7014755.1 Mediator of RNA polymerase II transcription subunit 36a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 530.0 bits (1364), Expect = 1.3e-146
Identity = 296/305 (97.05%), Postives = 298/305 (97.70%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGG----RGGGRGGGRGRGGGRGGG 60
           MRPPRGRGGGGGFRGRGDGGR GGRGRGGGGGRGGGGG    RGGGRGGGRGRGGGRGGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGR-GGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGG 60

Query: 61  MKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120
           MKGGSKV+VEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN
Sbjct: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120

Query: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180
           PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR
Sbjct: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180

Query: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG
Sbjct: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240

Query: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPKK 300
           HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKP+EQVTLEPFERDHACVVG YRAPKK
Sbjct: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKK 300

Query: 301 QKPAA 302
           QK AA
Sbjct: 301 QKAAA 304

[Close]

BLAST of Sed0008349 vs. NCBI nr
Match: XP_023552409.1 (mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 529.6 bits (1363), Expect = 1.7e-146
Identity = 296/306 (96.73%), Postives = 298/306 (97.39%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGG-----RGGGRGGGRGRGGGRGG 60
           MRPPRGRGGGGGFRGRGDGGR GGRGRGGGGGRGGGGG     RGGGRGGGRGRGGGRGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGR-GGRGRGGGGGRGGGGGRGMASRGGGRGGGRGRGGGRGG 60

Query: 61  GMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 120
           GMKGGSKV+VEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW
Sbjct: 61  GMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 120

Query: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180
           NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG
Sbjct: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180

Query: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240
           RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG
Sbjct: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240

Query: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPK 300
           GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKP+EQVTLEPFERDHACVVG YRAPK
Sbjct: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPK 300

Query: 301 KQKPAA 302
           KQK AA
Sbjct: 301 KQKAAA 305

[Close]

BLAST of Sed0008349 vs. NCBI nr
Match: XP_022922917.1 (probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita moschata])

HSP 1 Score: 528.9 bits (1361), Expect = 2.9e-146
Identity = 295/305 (96.72%), Postives = 298/305 (97.70%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGG----RGGGRGGGRGRGGGRGGG 60
           MRPPRGRGGGGGFRGRGDGGR GGRGRGGGGGRGGGGG    RGGGRGGGRGRGGGRGGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGR-GGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGG 60

Query: 61  MKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120
           MKGGSKV+VEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRI+VQNEDGTKVEYRVWN
Sbjct: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRIAVQNEDGTKVEYRVWN 120

Query: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180
           PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR
Sbjct: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180

Query: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG
Sbjct: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240

Query: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPKK 300
           HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKP+EQVTLEPFERDHACVVG YRAPKK
Sbjct: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKK 300

Query: 301 QKPAA 302
           QK AA
Sbjct: 301 QKAAA 304

[Close]

BLAST of Sed0008349 vs. NCBI nr
Match: XP_008439295.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Cucumis melo])

HSP 1 Score: 528.1 bits (1359), Expect = 5.0e-146
Identity = 294/306 (96.08%), Postives = 298/306 (97.39%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGG-----RGGGRGGGRGRGGGRGG 60
           MRPPRGRGGGGGFRGRGDGGR GGRGRGGGGGRGGGGG     RGGGRGGGRGRGGGRGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGR-GGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGG 60

Query: 61  GMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 120
           GMKGGSKV+VEPHRHEGIFIAKGKEDALVTKNMV+GESVYNEKRISVQNEDGTK+EYRVW
Sbjct: 61  GMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRISVQNEDGTKIEYRVW 120

Query: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180
           NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG
Sbjct: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180

Query: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240
           RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG
Sbjct: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240

Query: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPK 300
           GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKP+EQVTLEPFERDHACVVG YRAPK
Sbjct: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPK 300

Query: 301 KQKPAA 302
           KQK AA
Sbjct: 301 KQKAAA 305

[Close]

BLAST of Sed0008349 vs. ExPASy Swiss-Prot
Match: Q94AH9 (rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana OX=3702 GN=FIB2 PE=1 SV=2)

HSP 1 Score: 444.5 bits (1142), Expect = 9.5e-124
Identity = 261/317 (82.33%), Postives = 273/317 (86.12%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGGRGGGRG----GGRGRG------ 60
           MRPP    GGG   GRG GG  GGRG GG  G  GGGGRGGGRG    GGRGRG      
Sbjct: 1   MRPPLTGSGGGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGGRGFSDRGGRGRGRGPPRG 60

Query: 61  ---GGRG----GGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQ 120
              GGRG    GGMKGGSKVIVEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQ
Sbjct: 61  GARGGRGPAGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQ 120

Query: 121 NEDGTKVEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTG 180
           NEDGTK EYRVWNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G
Sbjct: 121 NEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEG 180

Query: 181 IVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 240
            VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI
Sbjct: 181 CVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 240

Query: 241 LALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERD 300
           LALNASYFLK+GGHFVISIKANCIDSTVPAEAVF +EV KL+ +QFKP+EQVTLEPFERD
Sbjct: 241 LALNASYFLKSGGHFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERD 300

[Close]

BLAST of Sed0008349 vs. ExPASy Swiss-Prot
Match: Q9FEF8 (rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana OX=3702 GN=FIB1 PE=1 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 1.4e-122
Identity = 258/307 (84.04%), Postives = 269/307 (87.62%), Query Frame = 0


Query: 1   MRPP--RGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGGRGG----GRGGGRGRGGGRG 60
           MRPP   GRGGGG   GR  GGRG G GR  GGGR G  GR G    GRG  RGRGG   
Sbjct: 1   MRPPVTGGRGGGGFRGGRDGGGRGFGGGRSFGGGRSGDRGRSGPRGRGRGAPRGRGGPPR 60

Query: 61  GGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRV 120
           GGMKGGSKVIVEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTKVEYRV
Sbjct: 61  GGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180
           WNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRS
Sbjct: 121 WNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRS 180

Query: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240
           GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK 
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKT 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAP 300
           GGHFVISIKANCIDSTV AEAVF SEV KL+ +QFKP+EQVTLEPFERDHACVVG YR P
Sbjct: 241 GGHFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMP 300

Query: 301 KKQKPAA 302
           KKQK  A
Sbjct: 301 KKQKTPA 307

[Close]

BLAST of Sed0008349 vs. ExPASy Swiss-Prot
Match: Q8I1F4 (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 3.6e-107
Identity = 227/296 (76.69%), Postives = 251/296 (84.80%), Query Frame = 0


Query: 6   GRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGGR-GGGRGGGRGRGGGRG---GGMKGGS 65
           GRGG GG RG G  G GGG GRGG GGRGGGGGR GGGRGGG   GGGRG   GG KGG 
Sbjct: 51  GRGGFGGGRGGGGRGGGGGGGRGGFGGRGGGGGRGGGGRGGGGRGGGGRGGGAGGFKGGK 110

Query: 66  KVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNPFRSK 125
            V +EPHRHEG+FIA+GKEDALVT+N V G  VY EKRISV+N +G K+EYRVWNPFRSK
Sbjct: 111 TVTIEPHRHEGVFIARGKEDALVTRNFVPGSEVYGEKRISVEN-NGEKIEYRVWNPFRSK 170

Query: 126 LAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNM 185
           LAAAVLGGV+ I + PG++VLYLGAASGTTVSHVSDVVGP G+VYAVEFSHRSGRDL+N+
Sbjct: 171 LAAAVLGGVEQIHMPPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLINV 230

Query: 186 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVIS 245
           AKKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ RI+ALNA +FLK GGHFVIS
Sbjct: 231 AKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVIS 290

Query: 246 IKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPKKQ 298
           IKA+CIDST   EAVFASEV K++AD+ KP EQ+TLEP+ERDHA VVG YR P KQ
Sbjct: 291 IKASCIDSTAQPEAVFASEVKKMQADKLKPQEQLTLEPYERDHAVVVGVYRPPPKQ 345

[Close]

BLAST of Sed0008349 vs. ExPASy Swiss-Prot
Match: P22509 (rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus OX=10116 GN=Fbl PE=1 SV=2)

HSP 1 Score: 388.7 bits (997), Expect = 6.2e-107
Identity = 226/301 (75.08%), Postives = 252/301 (83.72%), Query Frame = 0


Query: 6   GRGGGGGFRGRGDGGRGGGRGRGGGG----GRGGGGGRGGG--RGGGRGRGGGRGG--GM 65
           GRGG GGF G   G  GGGRGRGGGG    GRGGGGGRGGG   GGGRGRGGGRGG  G 
Sbjct: 27  GRGGRGGFGGGRGGFGGGGRGRGGGGGGFRGRGGGGGRGGGFQSGGGRGRGGGRGGKRGN 86

Query: 66  KGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP 125
           + G  V+VEPHRHEG+FI +GKEDALVTKN+V GESVY EKR+S+ +E   K+EYR WNP
Sbjct: 87  QSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYRAWNP 146

Query: 126 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 185
           FRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRD
Sbjct: 147 FRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD 206

Query: 186 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 245
           L+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA  FL+ GGH
Sbjct: 207 LINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGH 266

Query: 246 FVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPKKQ 299
           FVISIKANCIDST  AEAVFASEV K++ +  KP EQ+TLEP+ERDHA VVG YR P K 
Sbjct: 267 FVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKA 326

[Close]

BLAST of Sed0008349 vs. ExPASy Swiss-Prot
Match: P35550 (rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus OX=10090 GN=Fbl PE=1 SV=2)

HSP 1 Score: 386.0 bits (990), Expect = 4.0e-106
Identity = 225/301 (74.75%), Postives = 251/301 (83.39%), Query Frame = 0


Query: 6   GRGGGGGFRGRGDGGRGGGRGRGGGG----GRGGGGGRGGG--RGGGRGRGGGRGG--GM 65
           GRGG GGF G   G  GGGRGRGGGG    GRGGGGGRGGG   GG RGRGGGRGG  G 
Sbjct: 27  GRGGRGGFGGGRGGFGGGGRGRGGGGGGFRGRGGGGGRGGGFQSGGNRGRGGGRGGKRGN 86

Query: 66  KGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWNP 125
           + G  V+VEPHRHEG+FI +GKEDALVTKN+V GESVY EKR+S+ +E   K+EYR WNP
Sbjct: 87  QSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSI-SEGDDKIEYRAWNP 146

Query: 126 FRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRD 185
           FRSKLAAA+LGGVD I IKPGA+VLYLGAASGTTVSHVSD+VGP G+VYAVEFSHRSGRD
Sbjct: 147 FRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD 206

Query: 186 LVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGH 245
           L+N+AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA  FL+ GGH
Sbjct: 207 LINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGH 266

Query: 246 FVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPKKQ 299
           FVISIKANCIDST  AEAVFASEV K++ +  KP EQ+TLEP+ERDHA VVG YR P K 
Sbjct: 267 FVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKV 326

[Close]

BLAST of Sed0008349 vs. ExPASy TrEMBL
Match: A0A6J1CHH3 (mediator of RNA polymerase II transcription subunit 36a-like OS=Momordica charantia OX=3673 GN=LOC111011688 PE=3 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.3e-147
Identity = 296/306 (96.73%), Postives = 299/306 (97.71%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGG-----RGGGRGGGRGRGGGRGG 60
           MRPPRGRGGGGGFRGRGDGGR GGRGRGGGGGRGGGGG     RGGGRGGGRGRGGGRGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGR-GGRGRGGGGGRGGGGGRGMASRGGGRGGGRGRGGGRGG 60

Query: 61  GMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 120
           GMKGGSKV++EPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW
Sbjct: 61  GMKGGSKVVIEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 120

Query: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180
           NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG
Sbjct: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180

Query: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240
           RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG
Sbjct: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240

Query: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPK 300
           GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKP+EQVTLEPFERDHACVVG YRAPK
Sbjct: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPK 300

Query: 301 KQKPAA 302
           KQKPAA
Sbjct: 301 KQKPAA 305

[Close]

BLAST of Sed0008349 vs. ExPASy TrEMBL
Match: A0A6J1JA27 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita maxima OX=3661 GN=LOC111483086 PE=3 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 6.4e-147
Identity = 296/305 (97.05%), Postives = 298/305 (97.70%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGG----RGGGRGGGRGRGGGRGGG 60
           MRPPRGRGGGGGFRGRGDGGR GGRGRGGGGGRGGGGG    RGGGRGGGRGRGGGRGGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGR-GGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGG 60

Query: 61  MKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120
           MKGGSKV+VEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN
Sbjct: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120

Query: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180
           PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR
Sbjct: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180

Query: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG
Sbjct: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240

Query: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPKK 300
           HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKP+EQVTLEPFERDHACVVG YRAPKK
Sbjct: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKK 300

Query: 301 QKPAA 302
           QK AA
Sbjct: 301 QKAAA 304

[Close]

BLAST of Sed0008349 vs. ExPASy TrEMBL
Match: A0A6J1E4P7 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita moschata OX=3662 GN=LOC111430753 PE=3 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 1.4e-146
Identity = 295/305 (96.72%), Postives = 298/305 (97.70%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGG----RGGGRGGGRGRGGGRGGG 60
           MRPPRGRGGGGGFRGRGDGGR GGRGRGGGGGRGGGGG    RGGGRGGGRGRGGGRGGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGR-GGRGRGGGGGRGGGGGRGMSRGGGRGGGRGRGGGRGGG 60

Query: 61  MKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN 120
           MKGGSKV+VEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRI+VQNEDGTKVEYRVWN
Sbjct: 61  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRIAVQNEDGTKVEYRVWN 120

Query: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180
           PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR
Sbjct: 121 PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR 180

Query: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240
           DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG
Sbjct: 181 DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG 240

Query: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPKK 300
           HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKP+EQVTLEPFERDHACVVG YRAPKK
Sbjct: 241 HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKK 300

Query: 301 QKPAA 302
           QK AA
Sbjct: 301 QKAAA 304

[Close]

BLAST of Sed0008349 vs. ExPASy TrEMBL
Match: A0A1S3AY25 (mediator of RNA polymerase II transcription subunit 36a-like OS=Cucumis melo OX=3656 GN=LOC103484122 PE=3 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.4e-146
Identity = 294/306 (96.08%), Postives = 298/306 (97.39%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGG-----RGGGRGGGRGRGGGRGG 60
           MRPPRGRGGGGGFRGRGDGGR GGRGRGGGGGRGGGGG     RGGGRGGGRGRGGGRGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGR-GGRGRGGGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGG 60

Query: 61  GMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 120
           GMKGGSKV+VEPHRHEGIFIAKGKEDALVTKNMV+GESVYNEKRISVQNEDGTK+EYRVW
Sbjct: 61  GMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRISVQNEDGTKIEYRVW 120

Query: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180
           NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG
Sbjct: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180

Query: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240
           RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG
Sbjct: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240

Query: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPK 300
           GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKP+EQVTLEPFERDHACVVG YRAPK
Sbjct: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPK 300

Query: 301 KQKPAA 302
           KQK AA
Sbjct: 301 KQKAAA 305

[Close]

BLAST of Sed0008349 vs. ExPASy TrEMBL
Match: A0A6J1HX74 (probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita maxima OX=3661 GN=LOC111467690 PE=3 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 4.1e-146
Identity = 294/306 (96.08%), Postives = 298/306 (97.39%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGG-----RGGGRGGGRGRGGGRGG 60
           MRPPRGRGGGGGFRGRGDGGR GGRGRGGGGGRG GGG     RGGGRGGGRGRGGGRGG
Sbjct: 1   MRPPRGRGGGGGFRGRGDGGR-GGRGRGGGGGRGFGGGRGMASRGGGRGGGRGRGGGRGG 60

Query: 61  GMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 120
           GMKGGSKV+VEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTK+EYRVW
Sbjct: 61  GMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVW 120

Query: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180
           NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGP+GIVYAVEFSHRSG
Sbjct: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRSG 180

Query: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240
           RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG
Sbjct: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240

Query: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPK 300
           GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKP+EQVTLEPFERDHACVVG YRAPK
Sbjct: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPK 300

Query: 301 KQKPAA 302
           KQKPAA
Sbjct: 301 KQKPAA 305

[Close]

BLAST of Sed0008349 vs. TAIR 10
Match: AT4G25630.1 (fibrillarin 2 )

HSP 1 Score: 444.5 bits (1142), Expect = 6.8e-125
Identity = 261/317 (82.33%), Postives = 273/317 (86.12%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGGRGGGRG----GGRGRG------ 60
           MRPP    GGG   GRG GG  GGRG GG  G  GGGGRGGGRG    GGRGRG      
Sbjct: 1   MRPPLTGSGGGFSGGRGRGGYSGGRGDGGFSGGRGGGGRGGGRGFSDRGGRGRGRGPPRG 60

Query: 61  ---GGRG----GGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQ 120
              GGRG    GGMKGGSKVIVEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQ
Sbjct: 61  GARGGRGPAGRGGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQ 120

Query: 121 NEDGTKVEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTG 180
           NEDGTK EYRVWNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G
Sbjct: 121 NEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEG 180

Query: 181 IVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 240
            VYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI
Sbjct: 181 CVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARI 240

Query: 241 LALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERD 300
           LALNASYFLK+GGHFVISIKANCIDSTVPAEAVF +EV KL+ +QFKP+EQVTLEPFERD
Sbjct: 241 LALNASYFLKSGGHFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERD 300

[Close]

BLAST of Sed0008349 vs. TAIR 10
Match: AT5G52470.1 (fibrillarin 1 )

HSP 1 Score: 440.7 bits (1132), Expect = 9.8e-124
Identity = 258/307 (84.04%), Postives = 269/307 (87.62%), Query Frame = 0


Query: 1   MRPP--RGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGGRGG----GRGGGRGRGGGRG 60
           MRPP   GRGGGG   GR  GGRG G GR  GGGR G  GR G    GRG  RGRGG   
Sbjct: 1   MRPPVTGGRGGGGFRGGRDGGGRGFGGGRSFGGGRSGDRGRSGPRGRGRGAPRGRGGPPR 60

Query: 61  GGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRV 120
           GGMKGGSKVIVEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTKVEYRV
Sbjct: 61  GGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180
           WNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRS
Sbjct: 121 WNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRS 180

Query: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKA 240
           GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK 
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKT 240

Query: 241 GGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAP 300
           GGHFVISIKANCIDSTV AEAVF SEV KL+ +QFKP+EQVTLEPFERDHACVVG YR P
Sbjct: 241 GGHFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMP 300

Query: 301 KKQKPAA 302
           KKQK  A
Sbjct: 301 KKQKTPA 307

[Close]

BLAST of Sed0008349 vs. TAIR 10
Match: AT5G52490.1 (Fibrillarin family protein )

HSP 1 Score: 327.0 bits (837), Expect = 1.6e-89
Identity = 198/301 (65.78%), Postives = 230/301 (76.41%), Query Frame = 0


Query: 1   MRPPRGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGGRGGGRGGGRGRGGGR-----GG 60
           M+PP+ RG GGG RG      G G  RGG G    G GRGG    GRGRG GR      G
Sbjct: 1   MKPPQ-RGRGGGVRG------GRGLARGGEGSAVRGSGRGG--ESGRGRGPGRVKSESDG 60

Query: 61  GMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVW 120
           G+KGGSKV+V PHRH G+F+AK K DALVTKN+V GE +YNEKRI VQNED + VEYRVW
Sbjct: 61  GIKGGSKVLVTPHRHAGVFVAKSKADALVTKNLVPGEIIYNEKRIFVQNEDRSTVEYRVW 120

Query: 121 NPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSG 180
           NP RSKLA A+  GVD+IWIKPG +VLYLGA+SG TVSHVSD+VGP G VYAVE S   G
Sbjct: 121 NPHRSKLADAITTGVDNIWIKPGVKVLYLGASSGYTVSHVSDIVGPEGCVYAVEHSDICG 180

Query: 181 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAG 240
           + L+NMA+KRTNVIPIIEDARHPAKYRMLVGMVD+IFSDV  P+QA IL+LNASYFLK+G
Sbjct: 181 KVLMNMAEKRTNVIPIIEDARHPAKYRMLVGMVDIIFSDVNHPEQANILSLNASYFLKSG 240

Query: 241 GHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPSEQVTLEPFERDHACVVGTYRAPK 297
           GHF+ISIKAN IDST+ AE V+  EV KL+ ++ +P+E + L+  E  HACV G YR P+
Sbjct: 241 GHFMISIKANSIDSTIAAETVYQMEVEKLQMEELRPTEILHLDSCEEKHACVFGGYRLPR 292

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BLAST of Sed0008349 vs. TAIR 10
Match: AT5G52470.2 (fibrillarin 1 )

HSP 1 Score: 308.9 bits (790), Expect = 4.4e-84
Identity = 190/226 (84.07%), Postives = 197/226 (87.17%), Query Frame = 0


Query: 1   MRPP--RGRGGGGGFRGRGDGGRGGGRGRGGGGGRGGGGGRGG----GRGGGRGRGGGRG 60
           MRPP   GRGGGG   GR  GGRG G GR  GGGR G  GR G    GRG  RGRGG   
Sbjct: 1   MRPPVTGGRGGGGFRGGRDGGGRGFGGGRSFGGGRSGDRGRSGPRGRGRGAPRGRGGPPR 60

Query: 61  GGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRV 120
           GGMKGGSKVIVEPHRH G+FIAKGKEDALVTKN+V GE+VYNEKRISVQNEDGTKVEYRV
Sbjct: 61  GGMKGGSKVIVEPHRHAGVFIAKGKEDALVTKNLVPGEAVYNEKRISVQNEDGTKVEYRV 120

Query: 121 WNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRS 180
           WNPFRSKLAAA+LGGVD+IWIKPGA+VLYLGAASGTTVSHVSD+VGP G VYAVEFSHRS
Sbjct: 121 WNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPEGCVYAVEFSHRS 180

Query: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 221
           GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ
Sbjct: 181 GRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 226

The following BLAST results are available for this feature:

BLAST of Sed0008349 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141240.1	2.6e-147	96.73	mediator of RNA polymerase II transcription subunit 36a-like [Momordica charanti...	[more]
XP_022984980.1	1.3e-146	97.05	probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita maxi...	[more]
XP_023552409.1	1.7e-146	96.73	mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo sub...	[more]
XP_022922917.1	2.9e-146	96.72	probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita mosc...	[more]
XP_008439295.1	5.0e-146	96.08	PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Cucumis...	[more]

BLAST of Sed0008349 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AH9	9.5e-124	82.33	rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana OX=3702 GN=FIB...	[more]
Q9FEF8	1.4e-122	84.04	rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana OX=3702 GN=FIB...	[more]
Q8I1F4	3.6e-107	76.69	rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta OX=7220 GN=Fib PE=3...	[more]
P22509	6.2e-107	75.08	rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus OX=10116 GN=Fbl PE=...	[more]
P35550	4.0e-106	74.75	rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus OX=10090 GN=Fbl PE=1 SV=...	[more]

BLAST of Sed0008349 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHH3	1.3e-147	96.73	mediator of RNA polymerase II transcription subunit 36a-like OS=Momordica charan...	[more]
A0A6J1JA27	6.4e-147	97.05	probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita ma...	[more]
A0A6J1E4P7	1.4e-146	96.72	probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita mo...	[more]
A0A1S3AY25	2.4e-146	96.08	mediator of RNA polymerase II transcription subunit 36a-like OS=Cucumis melo OX=...	[more]
A0A6J1HX74	4.1e-146	96.08	probable mediator of RNA polymerase II transcription subunit 36b OS=Cucurbita ma...	[more]

BLAST of Sed0008349 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25630.1	6.8e-125	82.33	fibrillarin 2	[more]
AT5G52470.1	9.8e-124	84.04	fibrillarin 1	[more]
AT5G52490.1	1.6e-89	65.78	Fibrillarin family protein	[more]
AT5G52470.2	4.4e-84	84.07	fibrillarin 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000692	Fibrillarin	PRINTS	PR00052	FIBRILLARIN	coord: 83..102 score: 64.29 coord: 138..159 score: 79.22 coord: 111..130 score: 75.71
IPR000692	Fibrillarin	SMART	SM01206	Fibrillarin_2	coord: 65..175 e-value: 1.8E-18 score: 77.3
IPR000692	Fibrillarin	PFAM	PF01269	Fibrillarin	coord: 65..166 e-value: 6.8E-41 score: 139.8
None	No IPR available	GENE3D	3.40.50.150	Vaccinia Virus protein VP39	coord: 116..171 e-value: 2.2E-22 score: 81.5
None	No IPR available	GENE3D	3.30.200.20	Phosphorylase Kinase; domain 1	coord: 60..115 e-value: 4.3E-30 score: 105.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	PANTHER	PTHR10335	RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN	coord: 4..170
None	No IPR available	PANTHER	PTHR10335:SF22	FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED	coord: 4..170
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 63..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008349.1	Sed0008349.1	mRNA
Sed0008349.2	Sed0008349.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000494	box C/D RNA 3'-end processing
biological_process	GO:1990258	histone glutamine methylation
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0031167	rRNA methylation
biological_process	GO:0051225	spindle assembly
biological_process	GO:0006364	rRNA processing
biological_process	GO:0031122	cytoplasmic microtubule organization
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000922	spindle pole
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0000930	gamma-tubulin complex
cellular_component	GO:0005874	microtubule
cellular_component	GO:0000923	equatorial microtubule organizing center
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0031428	box C/D RNP complex
molecular_function	GO:0043015	gamma-tubulin binding
molecular_function	GO:1990259	histone-glutamine methyltransferase activity
molecular_function	GO:0051011	microtubule minus-end binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008649	rRNA methyltransferase activity
molecular_function	GO:0008168	methyltransferase activity