Sed0008334 (gene) Chayote v1

Overview


Name	Sed0008334
Type	gene
Organism	Sechium edule (Chayote v1)
Description	expressed protein localized to the inner membrane of the chloroplast.
Location	LG01: 2644291 .. 2649660 (+)
RNA-Seq Expression	Sed0008334
Synteny	Sed0008334

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGACACAACAAACCCTAATAGGTTCAGTGCACTGCCCTTCTTGTCAATAGATAGAAGTTAGATATTATAATTCTAAAAAAAAAGGTTAAATATTAAAAAATAAAAAAGTATTAGAAGTCAATAAGAAACCAGTTATCTTCAACACTCTAACTTGCGCTTTCTTCTTCGTTTCTCTCCAATTTCTTTGATTTCTCTGTAAATCTCTGCTCTCCTTCTTCCACATGGCCGCCAGCTTTGCTCCTTCGCTCTCAGTATCTGGTATGCACTTCAATCTTTTCATTTACATATTCATCATATTCACACGATTGTGCGTTCGTGTTGAGCGATCGAGTAGATAGATCGATCCTTTTCCTTTGTAATCATCGCTTCTTCGATTTCTTTTTCGAAATCTCTGGAAATGGATGAATCTATGAAGCTTAAGATTTCATTTCCAATGTAGGTTGCTATTACAAATTAGTTTTGTTATTTCGAGGAGCTTTGTTGACTGTTATAGATTGTTGCTTTTTTTTTTCTCTCTGTACGTTGTGTACGAAAGATTTCCTAGGAAATCACTCGAGAAATTTGTGGTTTCGAGGAATTTGTTGTGTGAATTTCTGGACGGAATTGGAGGTGATAATCTTGACTGGTTTATAAGATTCGATCGCTTCAAATTTTAGGTTTATTTCTCGTTTGTTTTCACGAAGTAAACCATCTGTACATGGTTCTTAATTCTTTTATCTTTTTTTCGTTGTTTCCTTTTGTGTTTAGGGGGATTGGTTAAGGCCTCAGATCTGTCCTCAAAGTCCATTTCCTTTGGAAAAACACCAAAACTCGCCGTTCAGAAGAAATGCTTGAAAACCAACCACAAGTTATCAGTCCGTGCTGAGTACAAGTACGTTATGTTGCATTATGCATTGAACAAAGCATATGAACGTCAATTTGATAAATGATTGAATATGTTGTTCTTATTGAAGTCTGACGCTGGATATATTTCATCATGAATGAAAACTGAGGTGAATTCATTTTAATGTTGGATATCTAAAGTTACATGAATCTGAAATTGTTTCAGATATAGTTAGCTTTCTGAGCGATTTTAGTTACTATGAGTTCAAGCTAGCGAAAGATTAGGATCTTACAGTTGCAAAATTAATAGTCTAATCGTTTAATTTTATCAGGAGTGGCCGAGAGGGGGTGCTGTGTGAGAATAGGGATGGCTGATGAGCAGGCTAGAGTATATAAAATAGAAAAGGATGGAAGATTGTAAACACCAAGCGAAAGAAAAAGTAGTACACTCAATTCTCAAAATTCAAATAGGTTTCATATCAGGCTTTTTTTTAATAGAAAATACTGACTTCTCATTATATATGAACAAGTAATTATGGGTCTATTGGAATAGTTACAAAAACATTGCCACAGTTTAATCCAAGATCATAGTTACAAAAGGGAGGTAATCGACAACTCCAACAAACAACATAAAAAGTGACTGGTTCTAACAACGTACAAAAGAGATACGGTTGAAAGCAATAAACAACGTATCAGCGATTTTTGAGGGCATAAGTTTCAGTGTTTGAGGAATTTTACTTTAGTTCATTCATGGTGGATTGTTATACCTATCAGTAGTCCTAATGAGAATACAATCTCCAAATGAAATTCTACCGTATACCTCGAGGGATCTATCTCTAGTGAAGCGCACCTCATTTATTTTTGAGGCAAGATTTTCCTTAGATTCACCAGCACAACGCAAGACCGCTGTTTTCTTACAAGATGAGCTCCATCCTCCTTTCCCCCACCAGCATCTCAAAAGAAATTCCTCCAATCGTGAGCTACGTTTCCATGGTTTTGAAAATAGAAAGTAAATTGGAATGAGTTTCTTTTGTCTCCCTATCTACTAATCCTTTCTTTCAAACATGCCCGGTTTTATTATGTTATTGGGAAGAAACTGTACTTTTCGTTAAGAGAGAAAAAGAACAATAATGTTCTTATAAAAAACAATAACGAGAGAAGACAAGGCATCCTTCCTTGAGATGTTAAAATGATATTACTTGAAACCACTCTGTATTTAAAGTATTTTATTCTATTTAGATGTACTTTATGTTTTCCATTATATGCATGAACTGTTAATTAGAATACATTGTCTACTACGGATAAGTGATTACTGATGGTTCATTTTATTCATTTGTTTGCTCCTTGTTTTTCCCACTGGATACTTGATAAAGTTAAAGTTTGGGATGTTGTTTTGCCTGGTTGCCCTTGCTATTAGTTTATTATTGTTTCATATGAATAGAAAAACTCTATTGATGAGAATTGGATCAAATTAAGAACCTAACTAGACATCCTCAAGACAAAAAATAATTGCAAGGATAAACAAGAATGGTATACCTTATGGGTTAGTCTTATATATATTGACTTGGGCACCTATCTTGGATTGATATTCTGGCCTCTGGGGCAAAATGGTTGACTTACCATGTTCACTTTTTTTTTTTTTTTTGAGAATACATACCATGTTCGCTTTACTTTGTCATTTTACGATATCAAGTTTCTTTGTAATTTTTCGTTTCTTTCCTGCAGTATTTTTTTGTTTGGTCTTGCAGATGCATTTAATAACCTGTTTAAATAAGTTCTTAAATGAACTTCCTGCTATTTACTCCAATGCTACGAATGTGCTGTTTACCTGATTGAATCTTAAGTCTATGTGAAAGTTCTTCCTTAATTTTCTTCCTGAAGAACAGTTGGATTAATATTTACAAGTTTGTTTCTGTTACAGTGATGGTAGAAATGGAGGTGGGGACTTTGTTGCTGGTTTTCTTCTTGGGGGTGCTGTATTTGGAACCTTAGCTTACATTTTTGCCCCGCAGGTGAATTGAATGTTTTGTTCTGAAGCTTAACATATCATCTCCGGCAAATAACATCTTAGCATCAATCATTTGAATTTGACATCACTATTGATGTTCTAATTCAGCTTCATTTATTTTTAATATTCACATAAACATGCCATCTAGTTAGATGACTTCATGAAGCAAACAGTTAGGGAACTAATGCACATCTCCTTTGAAGTCATTTTCGATTTTATATGCAAGTTCATAAGGCTTGCTTATTTCTTTTCCCTACATTTGTTCCATTGTTGCTTTCAGTTAACTTTGTATGAGTTTCAGATTCAGAAATTTCATGTGCATCATAAGCTGATACTAGTTATAGTAAAATTATGCTATCCTTTGCGCATGAGTACTTCATGTGGTTTTTCATAGTCTGGAAAATTCTATTTATTGCCTTTCTGCTTGTATGCGTGTAATGCAGATCAGAAGATCTGTACTAAATGAAGATGAGTCCGGATTTAGGAAGGCTAAGCGTCCCATCTACTACGACGAAGGTCTAGAGGTAATCATGACTTACCCTTTTTGTAGATTATTTATTTATTGATTTTTATGAAATTTTGTTTCATTTGTATTATATAAAATAAGTTATAAATCCTTATTGTTGTGTCCCTTCCGTCTCAAAGTTTTCAAAAAAGAAAAAAATTGTTTCTACCTGTTTCATTGAAATTACTAAAGAAAGGGGTAGAACCCAGCGAGAAAATTACAAAAGACCTCCATTAACAAGGAGAGTAGCAAAGTAGCTATACTATAGTCATGAAAAAGAAAAGAAAGCTGATAGGATTTGTGGTAGGGGATACTTTAGTCATTAGTGAAGAATTTTGTTAAGCATTTTGGATTATTAATAGTGGTAGTATGGAGGAGAAAGTTATCAAAGTATTTTGGCCATTTTAGTATTAGGCTTGGGCTTGACGCAGGGGTTGAAGACTTGAGCTTTGAGGGTATATTCTCCTCAAGATCCCAAGTTCAAGATTCAGCTGTGTCATTACTCCTTCGATGTCTCCAGTGCTTGGTCTAGGGACAGGCGTGGTTACCTTGTTTAAAAGAAAGTATTAGGCTTGAGAGTAATCTCAAGAATGGGGAGTTCCAAACACCTACAATTACTTGGTTAGTTTTGTCTCGGATATTTCATGATTCAATCGAGCTCGGTTCTTATCAAACCACTAGAACAACAATGTTATCAAAGAACCTACAAAAAGAACAGCCTTATTATGGAAGGTTCTATGATTCCTCTGCCCTTCATCATTTTGTTAATGGTATGTAATGAGAGGTGAGAGAGGTGCAGTGCTATTTTATTTTGTTGAGTGGCTTGGTTTATGTTACATCATGTTAGATCAACCAATGTTTTTCGAATACGAATAAGCACGTCAGATTATAATTTAGTTGACATAAAAACTATATAGAAATTAGAATCACAATTCAAAACCTAGCGAATTGATTTTACGTCTGGACTCTACATCATTTTGTTCTGTGGTTTTCATGTAAAATCAACCTATGTTTATTGAATAAGAATAAGCATGTTTTATCATTGCGTTGGCAGCAAAAACTATATTATGGATGTAGAATGTTGAGCGATTATATTGAGTGATTATAAATGAGTGATTATTTTGAATGATTAGAAATTTAAATTTTAATAATAGCTCGTTTAGATATGATTATTCGTAAAAACATGTTTTAAAAAAAAAGATGTGGTTATTTGTAGAGGAGTTGCGGCACTAGCTCGTTTGGATAATGATTTTTGTAGAGGGATTGCGGCAATTGTTCGTTTGGATGTGGTTTGAAATGAGTGATAATTTTGACAGGTTTGAAATGAGTGATTATTTTGAAGAGTTAGAAATGAGTGGTTAAAAATGAATGATTAAAAACGAGTGGTTAGACTTAGAAATGAATGATTATTTTGAGTGGTTAGAAATGAGTGATTATTTTGAAGGATTACGATAGATCAGTTGGATAAGATTGTTTGAAGAGAAGTTATAAAAACTCATTCGTATTATCTTGTTTATTACGTGAACAAACACTCCCTATCGAATTACTCTATTGAATGTTTAGTATCTGAATGAACTTTAATTTTTCTGTAAAGCAGAAAACGAGAGAGACGTTGAATGCAAAAATAGGGCAATTGAATTCTGCCATTGACAATGTATCTTCACGTCTGAGAGGTGGCAAAAATACTCCAGCTGTGCCAGTTGAAGATGATTCTGAGATTGAAGCTACCATGTAAATTCAACTTAAACATGAACTCATCATATGATTGAACAGGTTTGAAGTTTCTTCTTCTTTGAGACCCTATCATCATATGGCAATATTCCACAATTTTTTGTTTCGAATTTTTTGGATTCAGCAAATTCAAAATGGGATGTTACACTTAGCATTGTTGGAAATATTTGAAGATAAGTACTTTAGAATTTCCTTTTGAATTCACTACTAAATTTCAGTTTGAGACCTAAATTTTTATATTTAGTTGCCAAAATGAGCATGTATATTTGACTTAGAGGTTATAGATTTGAATCTTACTGTC

mRNA sequence

GAGAGACACAACAAACCCTAATAGGTTCAGTGCACTGCCCTTCTTGTCAATAGATAGAAGTTAGATATTATAATTCTAAAAAAAAAGGTTAAATATTAAAAAATAAAAAAGTATTAGAAGTCAATAAGAAACCAGTTATCTTCAACACTCTAACTTGCGCTTTCTTCTTCGTTTCTCTCCAATTTCTTTGATTTCTCTGTAAATCTCTGCTCTCCTTCTTCCACATGGCCGCCAGCTTTGCTCCTTCGCTCTCAGTATCTGGGGGATTGGTTAAGGCCTCAGATCTGTCCTCAAAGTCCATTTCCTTTGGAAAAACACCAAAACTCGCCGTTCAGAAGAAATGCTTGAAAACCAACCACAAGTTATCAGTCCGTGCTGAGTACAATGATGGTAGAAATGGAGGTGGGGACTTTGTTGCTGGTTTTCTTCTTGGGGGTGCTGTATTTGGAACCTTAGCTTACATTTTTGCCCCGCAGATCAGAAGATCTGTACTAAATGAAGATGAGTCCGGATTTAGGAAGGCTAAGCGTCCCATCTACTACGACGAAGGTCTAGAGAAAACGAGAGAGACGTTGAATGCAAAAATAGGGCAATTGAATTCTGCCATTGACAATGTATCTTCACGTCTGAGAGGTGGCAAAAATACTCCAGCTGTGCCAGTTGAAGATGATTCTGAGATTGAAGCTACCATGTAAATTCAACTTAAACATGAACTCATCATATGATTGAACAGGTTTGAAGTTTCTTCTTCTTTGAGACCCTATCATCATATGGCAATATTCCACAATTTTTTGTTTCGAATTTTTTGGATTCAGCAAATTCAAAATGGGATGTTACACTTAGCATTGTTGGAAATATTTGAAGATAAGTACTTTAGAATTTCCTTTTGAATTCACTACTAAATTTCAGTTTGAGACCTAAATTTTTATATTTAGTTGCCAAAATGAGCATGTATATTTGACTTAGAGGTTATAGATTTGAATCTTACTGTC

Coding sequence (CDS)

ATGGCCGCCAGCTTTGCTCCTTCGCTCTCAGTATCTGGGGGATTGGTTAAGGCCTCAGATCTGTCCTCAAAGTCCATTTCCTTTGGAAAAACACCAAAACTCGCCGTTCAGAAGAAATGCTTGAAAACCAACCACAAGTTATCAGTCCGTGCTGAGTACAATGATGGTAGAAATGGAGGTGGGGACTTTGTTGCTGGTTTTCTTCTTGGGGGTGCTGTATTTGGAACCTTAGCTTACATTTTTGCCCCGCAGATCAGAAGATCTGTACTAAATGAAGATGAGTCCGGATTTAGGAAGGCTAAGCGTCCCATCTACTACGACGAAGGTCTAGAGAAAACGAGAGAGACGTTGAATGCAAAAATAGGGCAATTGAATTCTGCCATTGACAATGTATCTTCACGTCTGAGAGGTGGCAAAAATACTCCAGCTGTGCCAGTTGAAGATGATTCTGAGATTGAAGCTACCATGTAA

Protein sequence

MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYNDGRNGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLNAKIGQLNSAIDNVSSRLRGGKNTPAVPVEDDSEIEATM

Homology

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BLAST of Sed0008334 vs. NCBI nr
Match: XP_022148671.1 (uncharacterized protein LOC111017273 [Momordica charantia])

HSP 1 Score: 272.3 bits (695), Expect = 2.6e-69
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 1   MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYNDGRNGG 60
           MAA FAPSLSVSGGL+KASDLSSKSI+FG+ PKLA+QKKCL+TN KLSVRAEYNDGR GG
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDGRGGG 60

Query: 61  GDFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLNAK 120
           GDFVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDE GFR+AKRPIYYDEGLEKTR+TLNAK
Sbjct: 61  GDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAK 120

Query: 121 IGQLNSAIDNVSSRLRGGKNTPAVPVEDDSEIEATM 157
           IGQLNSAIDNVSSRLRGG NTPAVPVE D E EATM
Sbjct: 121 IGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM 156

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BLAST of Sed0008334 vs. NCBI nr
Match: XP_023512433.1 (uncharacterized protein LOC111777191 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 136/157 (86.62%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 1   MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYND-GRNG 60
           MAA FAPSLSVSGGL+KASDLSSKSISFG+TPKLA+Q+KC +TNHKLSVRAEYND GR+G
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSISFGQTPKLAIQRKCSRTNHKLSVRAEYNDGGRSG 60

Query: 61  GGDFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLNA 120
           GG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDE GFR+A+RPIYYD+GLEKTR+TLN 
Sbjct: 61  GGEFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRARRPIYYDDGLEKTRQTLNE 120

Query: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPVEDDSEIEATM 157
           KIGQLNSAIDNVSSRLRGG  TPAVPVE D EIEATM
Sbjct: 121 KIGQLNSAIDNVSSRLRGGNKTPAVPVEADPEIEATM 157

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BLAST of Sed0008334 vs. NCBI nr
Match: XP_008459202.1 (PREDICTED: uncharacterized protein LOC103498395 [Cucumis melo] >KAA0032090.1 uncharacterized protein E6C27_scaffold223G00620 [Cucumis melo var. makuwa] >TYK13532.1 uncharacterized protein E5676_scaffold299G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 4.1e-67
Identity = 136/158 (86.08%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 1   MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYND-GRNG 60
           MAA FAPSLSVSGGL+KASDLSSKS+SFG+TPKLA+++KC KTNHKLSVRAEYND GR+G
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSVSFGQTPKLAIRRKCSKTNHKLSVRAEYNDGGRSG 60

Query: 61  GGDFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLNA 120
           GGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNEDE GFR+AKRP+YYDEGLEKTR+TLNA
Sbjct: 61  GGDFVAGFLLGGAVFGTLAYLFAPQIRRSILNEDEHGFRRAKRPMYYDEGLEKTRQTLNA 120

Query: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPVED-DSEIEATM 157
           KI QLNSAIDNVSSRLRGG NTPAVPVE+ + EIEATM
Sbjct: 121 KISQLNSAIDNVSSRLRGGNNTPAVPVEEAEPEIEATM 158

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BLAST of Sed0008334 vs. NCBI nr
Match: KAG7010970.1 (hypothetical protein SDJN02_27768, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.0 bits (676), Expect = 4.1e-67
Identity = 135/157 (85.99%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYND-GRNG 60
           MAA FAPSLSVSGGL+KASDLSSKSISFG+ PKLA+Q+KC +TNHKLSVRAEYND GRNG
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSISFGQAPKLAIQRKCSRTNHKLSVRAEYNDGGRNG 60

Query: 61  GGDFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLNA 120
           GG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDE GFR+A+RPIYYD+GLEKTR+TLN 
Sbjct: 61  GGEFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRARRPIYYDDGLEKTRQTLNE 120

Query: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPVEDDSEIEATM 157
           KIGQLNSAIDNVSSRLRGG  TP+VPVE D EIEATM
Sbjct: 121 KIGQLNSAIDNVSSRLRGGNKTPSVPVEADPEIEATM 157

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BLAST of Sed0008334 vs. NCBI nr
Match: XP_022944447.1 (uncharacterized protein LOC111448897 [Cucurbita moschata])

HSP 1 Score: 264.2 bits (674), Expect = 7.0e-67
Identity = 135/157 (85.99%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYND-GRNG 60
           MAA FAPSLSVSGGL+KASDLSSKSISFG+ PKLA+Q+KC +T+HKLSVRAEYND GRNG
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSISFGQAPKLAIQRKCSRTSHKLSVRAEYNDGGRNG 60

Query: 61  GGDFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLNA 120
           GG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDE GFR+A+RPIYYD+GLEKTR+TLN 
Sbjct: 61  GGEFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRARRPIYYDDGLEKTRQTLNE 120

Query: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPVEDDSEIEATM 157
           KIGQLNSAIDNVSSRLRGG  TPAVPVE D EIEATM
Sbjct: 121 KIGQLNSAIDNVSSRLRGGNKTPAVPVEADPEIEATM 157

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BLAST of Sed0008334 vs. ExPASy TrEMBL
Match: A0A6J1D647 (uncharacterized protein LOC111017273 OS=Momordica charantia OX=3673 GN=LOC111017273 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.2e-69
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 1   MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYNDGRNGG 60
           MAA FAPSLSVSGGL+KASDLSSKSI+FG+ PKLA+QKKCL+TN KLSVRAEYNDGR GG
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSITFGQAPKLAIQKKCLRTNRKLSVRAEYNDGRGGG 60

Query: 61  GDFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLNAK 120
           GDFVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDE GFR+AKRPIYYDEGLEKTR+TLNAK
Sbjct: 61  GDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAK 120

Query: 121 IGQLNSAIDNVSSRLRGGKNTPAVPVEDDSEIEATM 157
           IGQLNSAIDNVSSRLRGG NTPAVPVE D E EATM
Sbjct: 121 IGQLNSAIDNVSSRLRGGNNTPAVPVEADPEKEATM 156

[Close]

BLAST of Sed0008334 vs. ExPASy TrEMBL
Match: A0A5D3CQ66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00050 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.0e-67
Identity = 136/158 (86.08%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 1   MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYND-GRNG 60
           MAA FAPSLSVSGGL+KASDLSSKS+SFG+TPKLA+++KC KTNHKLSVRAEYND GR+G
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSVSFGQTPKLAIRRKCSKTNHKLSVRAEYNDGGRSG 60

Query: 61  GGDFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLNA 120
           GGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNEDE GFR+AKRP+YYDEGLEKTR+TLNA
Sbjct: 61  GGDFVAGFLLGGAVFGTLAYLFAPQIRRSILNEDEHGFRRAKRPMYYDEGLEKTRQTLNA 120

Query: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPVED-DSEIEATM 157
           KI QLNSAIDNVSSRLRGG NTPAVPVE+ + EIEATM
Sbjct: 121 KISQLNSAIDNVSSRLRGGNNTPAVPVEEAEPEIEATM 158

[Close]

BLAST of Sed0008334 vs. ExPASy TrEMBL
Match: A0A1S3C9M4 (uncharacterized protein LOC103498395 OS=Cucumis melo OX=3656 GN=LOC103498395 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.0e-67
Identity = 136/158 (86.08%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 1   MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYND-GRNG 60
           MAA FAPSLSVSGGL+KASDLSSKS+SFG+TPKLA+++KC KTNHKLSVRAEYND GR+G
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSVSFGQTPKLAIRRKCSKTNHKLSVRAEYNDGGRSG 60

Query: 61  GGDFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLNA 120
           GGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNEDE GFR+AKRP+YYDEGLEKTR+TLNA
Sbjct: 61  GGDFVAGFLLGGAVFGTLAYLFAPQIRRSILNEDEHGFRRAKRPMYYDEGLEKTRQTLNA 120

Query: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPVED-DSEIEATM 157
           KI QLNSAIDNVSSRLRGG NTPAVPVE+ + EIEATM
Sbjct: 121 KISQLNSAIDNVSSRLRGGNNTPAVPVEEAEPEIEATM 158

[Close]

BLAST of Sed0008334 vs. ExPASy TrEMBL
Match: A0A6J1FVP6 (uncharacterized protein LOC111448897 OS=Cucurbita moschata OX=3662 GN=LOC111448897 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.4e-67
Identity = 135/157 (85.99%), Postives = 147/157 (93.63%), Query Frame = 0


Query: 1   MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYND-GRNG 60
           MAA FAPSLSVSGGL+KASDLSSKSISFG+ PKLA+Q+KC +T+HKLSVRAEYND GRNG
Sbjct: 1   MAACFAPSLSVSGGLIKASDLSSKSISFGQAPKLAIQRKCSRTSHKLSVRAEYNDGGRNG 60

Query: 61  GGDFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLNA 120
           GG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDE GFR+A+RPIYYD+GLEKTR+TLN 
Sbjct: 61  GGEFVAGFLLGGAVFGTLAYIFAPQIRRSILNEDEYGFRRARRPIYYDDGLEKTRQTLNE 120

Query: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPVEDDSEIEATM 157
           KIGQLNSAIDNVSSRLRGG  TPAVPVE D EIEATM
Sbjct: 121 KIGQLNSAIDNVSSRLRGGNKTPAVPVEADPEIEATM 157

[Close]

BLAST of Sed0008334 vs. ExPASy TrEMBL
Match: A0A6J1L384 (uncharacterized protein LOC111499995 OS=Cucurbita maxima OX=3661 GN=LOC111499995 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.8e-67
Identity = 137/156 (87.82%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 1   MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYND-GRNG 60
           MAA F+PSLSVSGGL+KASDLSSKSISFG  PKL+VQ KC KTNHKLSVRAEYND GR+G
Sbjct: 1   MAARFSPSLSVSGGLIKASDLSSKSISFGHAPKLSVQ-KCFKTNHKLSVRAEYNDGGRSG 60

Query: 61  GGDFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLNA 120
           GGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNE+E GF++AKRPIYYDEGLEKTRETLNA
Sbjct: 61  GGDFVAGFLLGGAVFGTLAYVFAPQIRRSLLNENEYGFKRAKRPIYYDEGLEKTRETLNA 120

Query: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPVEDDSEIEAT 156
           KIGQLNSAIDNVSSRLRGGKNTPAVPVE D E+EAT
Sbjct: 121 KIGQLNSAIDNVSSRLRGGKNTPAVPVEADPEVEAT 155

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BLAST of Sed0008334 vs. TAIR 10
Match: AT5G16660.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-40
Identity = 108/168 (64.29%), Postives = 120/168 (71.43%), Query Frame = 0


Query: 1   MAASFAPS-LSVSG----GLVKASDLS--SKSISFGKTPKLAVQKKCLKTNHKLSVRAEY 60
           MA+  A + LS+SG      VKA+ LS  +K  S  KT  L + KK  +T  K SV A Y
Sbjct: 1   MASCIATAPLSLSGVSQSHYVKANGLSTTTKLSSICKTSDLTIHKKSNRT-RKFSVSAGY 60

Query: 61  NDGRNGG--GDFVAGFLLGGAVFGTLAYIFAPQIRRSVLN-EDESGFRKAKRPIYYDEGL 120
            DG   G  GDF+AGFLLGGAVFG +AYIFAPQIRRSVLN EDE GF K K+P YYDEGL
Sbjct: 61  RDGSRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGL 120

Query: 121 EKTRETLNAKIGQLNSAIDNVSSRLRG-GKNTPA--VPVEDDSEIEAT 156
           EKTRETLN KIGQLNSAIDNVSSRLRG  KNT +  VPVE D E+EAT
Sbjct: 121 EKTRETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEAT 167

[Close]

BLAST of Sed0008334 vs. TAIR 10
Match: AT3G02900.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1). )

HSP 1 Score: 157.5 bits (397), Expect = 8.6e-39
Identity = 90/135 (66.67%), Postives = 102/135 (75.56%), Query Frame = 0


Query: 30  KTPKLAVQKKCLKTNHKLSVRAEYNDGRNGGG--DFVAGFLLGGAVFGTLAYIFAPQIRR 89
           K+  L VQ K    +HKLSV A Y  G  GGG  DFV GFLLG AVFGTLAYIFAPQIRR
Sbjct: 27  KSSTLTVQTKS-NRSHKLSVSAGYRGGSKGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRR 86

Query: 90  SVLNEDESGFRKAKRPIYYDEGLEKTRETLNAKIGQLNSAIDNVSSRLRGG-----KNT- 149
           SVL+E+E GF+K ++P+YYDEGLE+ RE LN KIGQLNSAID VSSRL+GG     KNT 
Sbjct: 87  SVLSENEYGFKKPEQPMYYDEGLEERREILNEKIGQLNSAIDKVSSRLKGGRSGSSKNTS 146

Query: 150 -PAVPVEDDSEIEAT 156
            P+VPVE D+E EAT
Sbjct: 147 SPSVPVETDAEAEAT 160

[Close]

BLAST of Sed0008334 vs. TAIR 10
Match: AT5G16660.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 106 Blast hits to 106 proteins in 32 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-38
Identity = 104/166 (62.65%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 1   MAASFAPS-LSVSG----GLVKASDLS--SKSISFGKTPKLAVQKKCLKTNHKLSVRAEY 60
           MA+  A + LS+SG      VKA+ LS  +K  S  KT  L + KK  +T  K SV A  
Sbjct: 1   MASCIATAPLSLSGVSQSHYVKANGLSTTTKLSSICKTSDLTIHKKSNRT-RKFSVSAGD 60

Query: 61  NDGRNGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSVLN-EDESGFRKAKRPIYYDEGLEK 120
                  GDF+AGFLLGGAVFG +AYIFAPQIRRSVLN EDE GF K K+P YYDEGLEK
Sbjct: 61  GSRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLEK 120

Query: 121 TRETLNAKIGQLNSAIDNVSSRLRG-GKNTPA--VPVEDDSEIEAT 156
           TRETLN KIGQLNSAIDNVSSRLRG  KNT +  VPVE D E+EAT
Sbjct: 121 TRETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEAT 165

[Close]

BLAST of Sed0008334 vs. TAIR 10
Match: AT3G02900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast hits to 80 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 155.2 bits (391), Expect = 4.2e-38
Identity = 97/164 (59.15%), Postives = 114/164 (69.51%), Query Frame = 0


Query: 1   MAASFAPSLSVSGGLVKASDLSSKSISFGKTPKLAVQKKCLKTNHKLSVRAEYNDGRNGG 60
           MA+  A  +S SG     +  +  +I   K+  L VQ K    +HKLSV A Y  G  GG
Sbjct: 1   MASLVAAPISFSGDSHVKAHRNFNAIR--KSSTLTVQTKS-NRSHKLSVSAGYRGGSKGG 60

Query: 61  G--DFVAGFLLGGAVFGTLAYIFAPQIRRSVLNEDESGFRKAKRPIYYDEGLEKTRETLN 120
           G  DFV GFLLG AVFGTLAYIFAPQIRRSVL+E+E GF+K ++P+YYDEGLE+ RE LN
Sbjct: 61  GSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVLSENEYGFKKPEQPMYYDEGLEERREILN 120

Query: 121 AKIGQLNSAIDNVSSRLRGG-----KNT--PAVPVEDDSEIEAT 156
            KIGQLNSAID VSSRL+GG     KNT  P+VPVE D+E EAT
Sbjct: 121 EKIGQLNSAIDKVSSRLKGGRSGSSKNTSSPSVPVETDAEAEAT 161

[Close]

BLAST of Sed0008334 vs. TAIR 10
Match: AT1G42960.1 (expressed protein localized to the inner membrane of the chloroplast. )

HSP 1 Score: 85.5 bits (210), Expect = 4.1e-17
Identity = 53/135 (39.26%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 25  SISFGKTPKLAVQKKCLKTNHKLSVRAEY--NDGRNGGGDFVAGFLLGGAVFGTLAYIFA 84
           S+SFG      +     +T   L++++ Y  +DG    G FV GF+LGG + G L  ++A
Sbjct: 34  SVSFGLNHSNKLHISAPRTKRILTIQSAYRDDDGSGSTGLFVGGFILGGLIVGALGCVYA 93

Query: 85  PQIRRSVLNEDESGFRKAKRPIYYDE--GLEKTRETLNAKIGQLNSAIDNVSSRLRGGKN 144
           PQI +++   D     +      YDE   LEKTR+ L  KI QLNSAID+VSS+L+  ++
Sbjct: 94  PQISKAIAGADRKDLMRKLPKFIYDEEKALEKTRKVLAEKIAQLNSAIDDVSSQLK-SED 153

Query: 145 TPAVPVEDDSEIEAT 156
           TP        EIEAT
Sbjct: 154 TPNGAALSTDEIEAT 167

The following BLAST results are available for this feature:

BLAST of Sed0008334 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148671.1	2.6e-69	89.10	uncharacterized protein LOC111017273 [Momordica charantia]	[more]
XP_023512433.1	1.8e-67	86.62	uncharacterized protein LOC111777191 [Cucurbita pepo subsp. pepo]	[more]
XP_008459202.1	4.1e-67	86.08	PREDICTED: uncharacterized protein LOC103498395 [Cucumis melo] >KAA0032090.1 unc...	[more]
KAG7010970.1	4.1e-67	85.99	hypothetical protein SDJN02_27768, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022944447.1	7.0e-67	85.99	uncharacterized protein LOC111448897 [Cucurbita moschata]	[more]

BLAST of Sed0008334 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0008334 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D647	1.2e-69	89.10	uncharacterized protein LOC111017273 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5D3CQ66	2.0e-67	86.08	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C9M4	2.0e-67	86.08	uncharacterized protein LOC103498395 OS=Cucumis melo OX=3656 GN=LOC103498395 PE=...	[more]
A0A6J1FVP6	3.4e-67	85.99	uncharacterized protein LOC111448897 OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]
A0A6J1L384	9.8e-67	87.82	uncharacterized protein LOC111499995 OS=Cucurbita maxima OX=3661 GN=LOC111499995...	[more]

BLAST of Sed0008334 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16660.1	1.2e-40	64.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G02900.2	8.6e-39	66.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G16660.2	1.1e-38	62.65	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G02900.1	4.2e-38	59.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G42960.1	4.1e-17	39.26	expressed protein localized to the inner membrane of the chloroplast.	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..156
None	No IPR available	PANTHER	PTHR34048	LOW-DENSITY RECEPTOR-LIKE PROTEIN	coord: 1..156
None	No IPR available	PANTHER	PTHR34048:SF3	LOW-DENSITY RECEPTOR-LIKE PROTEIN	coord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008334.1	Sed0008334.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane