Sed0008319 (gene) Chayote v1

Overview


Name	Sed0008319
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein RADIALIS-like 1
Location	LG04: 47348796 .. 47349041 (-)
RNA-Seq Expression	Sed0008319
Synteny	Sed0008319

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGTCTTCCCATGGTTCTAGCTCATGGACTCCAAAGCAAAACAAGGCCTTTGAGATGGCTTTGGCCGTTTATGACCAAGACTCCCCTAACCGATGGGTGAATGTTGCGAAAGCGGTTGGTGAAAAAACGCCTGAGGAAGTCAAAAGGCACTATGAGCTTCTTGTGGAAGATGTCAAGTTTATCGAGTCTGGTCAAGTTCCCTACCCATATCGTACTACAGGTAATATAATGGCATGA

mRNA sequence

ATGGCTTCAATGTCTTCCCATGGTTCTAGCTCATGGACTCCAAAGCAAAACAAGGCCTTTGAGATGGCTTTGGCCGTTTATGACCAAGACTCCCCTAACCGATGGGTGAATGTTGCGAAAGCGGTTGGTGAAAAAACGCCTGAGGAAGTCAAAAGGCACTATGAGCTTCTTGTGGAAGATGTCAAGTTTATCGAGTCTGGTCAAGTTCCCTACCCATATCGTACTACAGGTAATATAATGGCATGA

Coding sequence (CDS)

ATGGCTTCAATGTCTTCCCATGGTTCTAGCTCATGGACTCCAAAGCAAAACAAGGCCTTTGAGATGGCTTTGGCCGTTTATGACCAAGACTCCCCTAACCGATGGGTGAATGTTGCGAAAGCGGTTGGTGAAAAAACGCCTGAGGAAGTCAAAAGGCACTATGAGCTTCTTGTGGAAGATGTCAAGTTTATCGAGTCTGGTCAAGTTCCCTACCCATATCGTACTACAGGTAATATAATGGCATGA

Protein sequence

MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTGNIMA

Homology

[Close]

BLAST of Sed0008319 vs. NCBI nr
Match: XP_022136064.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 137.1 bits (344), Expect = 6.7e-29
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MASMSSHGSS+WT KQNKAFE ALAVYDQD+P RW+NVAKAVG KT EEVKRHYELLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGQVPYPYRTTG 78
          VKFIESGQV +PYRT+G
Sbjct: 61 VKFIESGQVSFPYRTSG 77

[Close]

BLAST of Sed0008319 vs. NCBI nr
Match: KAA0036150.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 8.7e-29
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MASMSSHGS +WT KQNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPYPYRTTGN 79
          VKFIESGQVP+PYRT+G+
Sbjct: 61 VKFIESGQVPFPYRTSGD 78

[Close]

BLAST of Sed0008319 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 8.7e-29
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MASMSSHGS +WT KQNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPYPYRTTGN 79
          VKFIESGQVP+PYRT+G+
Sbjct: 61 VKFIESGQVPFPYRTSGD 78

[Close]

BLAST of Sed0008319 vs. NCBI nr
Match: XP_004151125.2 (protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 5.6e-28
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MASMSSHGS +WT  QNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPYPYRTTG 78
          VKFIESGQVP+PYRT+G
Sbjct: 61 VKFIESGQVPFPYRTSG 77

[Close]

BLAST of Sed0008319 vs. NCBI nr
Match: KAE8645641.1 (hypothetical protein Csa_020418 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 5.6e-28
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MASMSSHGS +WT  QNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPYPYRTTG 78
          VKFIESGQVP+PYRT+G
Sbjct: 61 VKFIESGQVPFPYRTSG 77

[Close]

BLAST of Sed0008319 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-25
Identity = 56/77 (72.73%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 2  ASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDV 61
          +SMSS  S SWT KQNKAFE ALA YDQD+PNRW NVAK VG KT EEVKRHYELLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPYP-YRTTG 78
            IE+G VP+P YRT+G
Sbjct: 64 NSIENGHVPFPNYRTSG 80

[Close]

BLAST of Sed0008319 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-24
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 3  SMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVK 62
          SMSS+GS SWT KQNKAFE ALAVYDQD+P+RW NVA+AVG KTPEE KR Y+LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPYP-YRTT 77
           IE+G VP+P Y+TT
Sbjct: 65 SIENGHVPFPDYKTT 79

[Close]

BLAST of Sed0008319 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.3e-23
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MAS    G   W+ K+NKAFE ALAVYD+D+P+RW NVA+AV  +TPEEVK+HYE+LVED
Sbjct: 1  MASTRGSG-RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 60

Query: 61 VKFIESGQVPYP-YRTTGNIM 81
          +K+IESG+VP+P YRTTG  M
Sbjct: 61 IKYIESGKVPFPNYRTTGGNM 80

[Close]

BLAST of Sed0008319 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.2e-22
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MAS S   S+SWT K+NK FE ALA YDQD+P+RW NVA+AVG K+ EEV+RHYELL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VKFIESGQVPYP-YRTTGN 79
          V  IESG+ P+P YR+ GN
Sbjct: 61 VNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of Sed0008319 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-20
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MAS S   SSSWT KQNK FE ALAVYD+D+P+RW NVAKAVG K+ EEVKRHY++LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPYP-YRT 76
          +  IE   VP P Y+T
Sbjct: 61 LMNIEQDLVPLPKYKT 76

[Close]

BLAST of Sed0008319 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.2e-29
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MASMSSHGSS+WT KQNKAFE ALAVYDQD+P RW+NVAKAVG KT EEVKRHYELLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGQVPYPYRTTG 78
          VKFIESGQV +PYRT+G
Sbjct: 61 VKFIESGQVSFPYRTSG 77

[Close]

BLAST of Sed0008319 vs. ExPASy TrEMBL
Match: A0A5A7SYK4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1323G00110 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.2e-29
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MASMSSHGS +WT KQNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPYPYRTTGN 79
          VKFIESGQVP+PYRT+G+
Sbjct: 61 VKFIESGQVPFPYRTSGD 78

[Close]

BLAST of Sed0008319 vs. ExPASy TrEMBL
Match: A0A1S3BFW6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.2e-29
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MASMSSHGS +WT KQNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPYPYRTTGN 79
          VKFIESGQVP+PYRT+G+
Sbjct: 61 VKFIESGQVPFPYRTSGD 78

[Close]

BLAST of Sed0008319 vs. ExPASy TrEMBL
Match: A0A0A0K348 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.7e-28
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MASMSSHGS +WT  QNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPYPYRTTG 78
          VKFIESGQVP+PYRT+G
Sbjct: 61 VKFIESGQVPFPYRTSG 77

[Close]

BLAST of Sed0008319 vs. ExPASy TrEMBL
Match: A0A6J1F548 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111440931 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 62/77 (80.52%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MASMSSHGS+SWT KQNKAFE ALA YD+D+P+RW+NVA+AVG KT EEVKRHY+LLVED
Sbjct: 1  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVED 60

Query: 61 VKFIESGQVPYPYRTTG 78
          VKFIESG+VPYPYR +G
Sbjct: 61 VKFIESGRVPYPYRNSG 77

[Close]

BLAST of Sed0008319 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 115.2 bits (287), Expect = 2.5e-26
Identity = 56/77 (72.73%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 2  ASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDV 61
          +SMSS  S SWT KQNKAFE ALA YDQD+PNRW NVAK VG KT EEVKRHYELLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPYP-YRTTG 78
            IE+G VP+P YRT+G
Sbjct: 64 NSIENGHVPFPNYRTSG 80

[Close]

BLAST of Sed0008319 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-25
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 3  SMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVK 62
          SMSS+GS SWT KQNKAFE ALAVYDQD+P+RW NVA+AVG KTPEE KR Y+LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPYP-YRTT 77
           IE+G VP+P Y+TT
Sbjct: 65 SIENGHVPFPDYKTT 79

[Close]

BLAST of Sed0008319 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 100.1 bits (248), Expect = 8.4e-22
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MAS S   SSSWT KQNK FE ALAVYD+D+P+RW NVAKAVG K+ EEVKRHY++LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPYP-YRT 76
          +  IE   VP P Y+T
Sbjct: 61 LMNIEQDLVPLPKYKT 76

[Close]

BLAST of Sed0008319 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-20
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MAS S    S WT  QNK FE ALAVYD+D+P+RW NVAKAVG KT EEVKRHY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPYP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

[Close]

BLAST of Sed0008319 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-20
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVED 60
          MAS S    S WT  QNK FE ALAVYD+D+P+RW NVAKAVG KT EEVKRHY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPYP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

The following BLAST results are available for this feature:

BLAST of Sed0008319 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136064.1	6.7e-29	85.71	protein RADIALIS-like 1 [Momordica charantia]	[more]
KAA0036150.1	8.7e-29	83.33	protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-...	[more]
XP_008447024.1	8.7e-29	83.33	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_004151125.2	5.6e-28	83.12	protein RADIALIS-like 1 [Cucumis sativus]	[more]
KAE8645641.1	5.6e-28	83.12	hypothetical protein Csa_020418 [Cucumis sativus]	[more]

BLAST of Sed0008319 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	3.6e-25	72.73	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	3.9e-24	72.00	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	3.3e-23	65.43	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q6NNN0	8.2e-22	64.56	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q8GW75	1.2e-20	67.11	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of Sed0008319 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C385	3.2e-29	85.71	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]
A0A5A7SYK4	4.2e-29	83.33	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFW6	4.2e-29	83.33	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]
A0A0A0K348	2.7e-28	83.12	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 S...	[more]
A0A6J1F548	1.4e-27	80.52	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111440931 PE=4 SV=1	[more]

BLAST of Sed0008319 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	2.5e-26	72.73	RAD-like 1	[more]
AT2G21650.1	2.8e-25	72.00	Homeodomain-like superfamily protein	[more]
AT1G19510.1	8.4e-22	67.11	RAD-like 5	[more]
AT1G75250.1	1.6e-20	65.79	RAD-like 6	[more]
AT1G75250.2	1.6e-20	65.79	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 1.2E-6 score: 38.0
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 4..58 score: 6.06308
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 12..58 e-value: 2.75765E-6 score: 38.3254
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 8.6E-23 score: 81.9
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..78
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..78
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008319.1	Sed0008319.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity