Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCAATTTGTATTGGTTCAGTTATTGGGGTGGTAGAGGAGGTAGATTGTGATGAGGAGGAGAATACTGGGGTTGTGATGCGAATTCGCATTCGAATCAACATTGGCAATCCGCTTTCAAGAGGGAAGTTGGCGACTTCCAGTAGTGGGAAGGAGGTTTGGTGCCCTTTTATGTATGGGGGCTTACCTGACCAGTTTTTCTTTAGATGTGGTCGCTTGGGGCACTTTTATTGTGAGTGTGAGCAGCGCCGGCCTTCTTACCCTCATGCGGGCTACATTCACGAAAACTAACACTCCTTTTAGGGTGAAGGATCTAGAGGATCGACTTCCACATTCTTTTGATCGTTCCTCTAATCGCAGTGAGCGTGGTGATGGTAGTTTCTGGCAGAGGGAAGGTGGCCATCGTAGAAGTGATTTTGGGCATTGGAGGAGGTCGTTGGCTGAGAATGGTGTTTCTCAGTTGAGAGAAAGAACTTCAACTAGTCCTTTGGTTCCAGCTACTTCTGTTGGTAAGGTGGAGGGTGCCCAGTTTGAAGGTCTCAAATCAAGCATTGTGGAGAATTTGAGTGCTTGTACTCCAGTTAATCAAACCATTATTCTTAATGATGAAATTTCTTTGAAGCTGAATAAGGAGTTGGCGGGTGATATATCTGTATCCAAGGGTGTTAAGGCTAAGAGTGGATGTGGAAAAAATTTGATTTCCTTTGAGAAGCAGGTGGGCAAGTCTTTAGGCAGTCAAAGTGTTCTACTGGTTGCTACTTCAAATGGCTCTATTTTTTCAGTGGTCAATTGA mRNA sequence ATGGCAATTTGTATTGGTTCAGTTATTGGGGTGGTAGAGGAGGTAGATTGTGATGAGGAGGAGAATACTGGGGTTGTGATGCGAATTCGCATTCGAATCAACATTGGCAATCCGCTTTCAAGAGGGAAGTTGGCGACTTCCAGTAGTGGGAAGGAGGTTTGGTGCCCTTTTATCGCCGGCCTTCTTACCCTCATGCGGGCTACATTCACGAAAACTAACACTCCTTTTAGGGTGAAGGATCTAGAGGATCGACTTCCACATTCTTTTGATCGTTCCTCTAATCGCAGTGAGCGTGGTGATGGTAGTTTCTGGCAGAGGGAAGGTGGCCATCGTAGAAGTGATTTTGGGCATTGGAGGAGGTCGTTGGCTGAGAATGGTGTTTCTCAGTTGAGAGAAAGAACTTCAACTAGTCCTTTGGTTCCAGCTACTTCTGTTGGTAAGGTGGAGGGTGCCCAGTTTGAAGGTCTCAAATCAAGCATTGTGGAGAATTTGAGTGCTTGTACTCCAGTTAATCAAACCATTATTCTTAATGATGAAATTTCTTTGAAGCTGAATAAGGAGTTGGCGGGTGATATATCTGTATCCAAGGGTGTTAAGGCTAAGAGTGGATGTGGAAAAAATTTGATTTCCTTTGAGAAGCAGGTGGGCAAGTCTTTAGGCAGTCAAAGTGTTCTACTGGTTGCTACTTCAAATGGCTCTATTTTTTCAGTGGTCAATTGA Coding sequence (CDS) ATGGCAATTTGTATTGGTTCAGTTATTGGGGTGGTAGAGGAGGTAGATTGTGATGAGGAGGAGAATACTGGGGTTGTGATGCGAATTCGCATTCGAATCAACATTGGCAATCCGCTTTCAAGAGGGAAGTTGGCGACTTCCAGTAGTGGGAAGGAGGTTTGGTGCCCTTTTATCGCCGGCCTTCTTACCCTCATGCGGGCTACATTCACGAAAACTAACACTCCTTTTAGGGTGAAGGATCTAGAGGATCGACTTCCACATTCTTTTGATCGTTCCTCTAATCGCAGTGAGCGTGGTGATGGTAGTTTCTGGCAGAGGGAAGGTGGCCATCGTAGAAGTGATTTTGGGCATTGGAGGAGGTCGTTGGCTGAGAATGGTGTTTCTCAGTTGAGAGAAAGAACTTCAACTAGTCCTTTGGTTCCAGCTACTTCTGTTGGTAAGGTGGAGGGTGCCCAGTTTGAAGGTCTCAAATCAAGCATTGTGGAGAATTTGAGTGCTTGTACTCCAGTTAATCAAACCATTATTCTTAATGATGAAATTTCTTTGAAGCTGAATAAGGAGTTGGCGGGTGATATATCTGTATCCAAGGGTGTTAAGGCTAAGAGTGGATGTGGAAAAAATTTGATTTCCTTTGAGAAGCAGGTGGGCAAGTCTTTAGGCAGTCAAAGTGTTCTACTGGTTGCTACTTCAAATGGCTCTATTTTTTCAGTGGTCAATTGA Protein sequence MAICIGSVIGVVEEVDCDEEENTGVVMRIRIRINIGNPLSRGKLATSSSGKEVWCPFIAGLLTLMRATFTKTNTPFRVKDLEDRLPHSFDRSSNRSERGDGSFWQREGGHRRSDFGHWRRSLAENGVSQLRERTSTSPLVPATSVGKVEGAQFEGLKSSIVENLSACTPVNQTIILNDEISLKLNKELAGDISVSKGVKAKSGCGKNLISFEKQVGKSLGSQSVLLVATSNGSIFSVVN
Homology
BLAST of Sed0008287 vs. ExPASy TrEMBL
Match: A0A2N9IXX1 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57290 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 7.3e-05 Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0
Query: 2 AICIGSVIGVVEEVDCDEEE-NTGVVMRIRIRINIGNPLSRGKLATSSSGKEVWCPF 58
A +G +GVVE+V DEEE MRIR++I+I PL RG+ AT + GKE+W PF
Sbjct: 137 ASALGKAVGVVEQVAEDEEERGREGCMRIRVKIDISKPLCRGRKATLTGGKEIWIPF 193
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A2N9IXX1 | 7.3e-05 | 50.88 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 87..108 |
Relationships
The following mRNA feature(s) are a part of this gene:
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