Sed0008220 (gene) Chayote v1

Overview


Name	Sed0008220
Type	gene
Organism	Sechium edule (Chayote v1)
Description	B3 domain-containing protein
Location	LG01: 819626 .. 821912 (+)
RNA-Seq Expression	Sed0008220
Synteny	Sed0008220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTCAAGAAAATGTGTAAAGACAATCCCCATTTCTTTAAAGTTGTTCTTGCTCATGCACTTGAAGAACAAAAGCTTGTAAGCAAATTTATTCTACTAATGTCAATCACTTGTTGTTTTTTTTTTTAAACGTGTAACCTTTTGATTACTAGATCGTACATAGTATATTATTGACCATTATTTTTTAATTTAATTTGTTTAGGAAATTCCGAAAAAGTTTGTGAGACAATATGGGGTAAGAGCTTTGTCAAAAAACCAAACATGTTTGAAGGTGGATGATGGAAGAGAGTGGGATGTGGGTTTGACTAAAAGTAATGGAAGCGTGTGGTTTGATCGTGGATGGCAAAAGTTTGTGGAGTTTTACGCCGTTGGATTGGAGTACTTTCTTGTCTTCAAATACGACAAGAACTTGTCGAATTTTAATGTTGTCATATTTGATCTTAGTGCTACAGAGATTGAGTATCCAACAAAACAAATTTGTGTTCATGAAGATGAAGTAAGTGTGAAAATGGAGACAAGTTTGGATGATTCTTGCTCTCAAGGTTTGTTTTTTTATTTGGATTGATTTTTCAAATCTATTTTTTAATTTAACCATATTTAGGACTCATGCTATACTCAATGTTATTTGAGTACTCTACTCCTTTTAACTAAAAAATTTAGTTTAAAAATAGATTTAAATTATTTTAGAGGTAATTTATACATTAAAAAAAAATCAAAAAATAAAAAAGTTGGGAAAGTTACCAGGATGGGATCTTATTTGTATATATAAAAAAAGTATGAAATTTAGGGGCACATATAGTATGAATTATTTATAATATGGGTGGGATCACTTCATATATACAAAATGTACAAAAATCCAAAAGTAAAAATTGGAGGTTATGACCCCTAGCAGCCTCGCCCCTCTCCATCCACCCCTTTTGTTCAATGGTTTTTATATATCTCATTTTTTTTTTTCATTTTGTATGATATTTAGATGTTAAAAAAATTTATAAAATAAAAATTAATTTATATATATATATTTTCTTAAGATTGTTTTGACACTGAGCTATCTATGAAGTTAGAGTTTATATCTCATGTCGGTGTTACTAAATTTTATTTATTTATTTTAGTTTAAATATTTAAAAAGTACTTTTATTGGCTAAAAATACAATCATTTTATTATATTGTTTAACCTTCAAATTGTTGTAGTGTAGCCCTTAATTAATTATTTTTCTTCTTAATGTCAATACTTTCTCTCAAGAAAACAATTTATAGTGTGCTCATGCTATAAATTAGCTTAGTTTTCTAGTTAACATCAATAAAATATTTTAAAAATTTTGAACTGAAATGAAATATAGTCTTGAAAGTTTAGAAAGTTAAGAATGAGATTTAGGTGTTTTCTCATTATATTTTTTTTCTTTCAAAACCTTAGATTACAAAGTTAACTGTAGGTAGTGTCAAAAAAACAAATGAATAGTAAGTATGCAAGAGACCTGAACCCTAACTTCGAATGCAATCCCCAACTCAATAGCAGTTTACAAGTCGAAAGGTCGAACAAGAGCGACCGAAGAAGCTACTGCCTTCCAGTCCAGGACTCTGAATCCTTCTTTCACGAGCAACATTTCACCTTCATGCATTTCTCGATGCCGTCTCGTAAGATCTTTCCTACCTTCTACCATTCATTATTTTTTTTGGTAAGAAAACGAACATATTATGCAATATATGTAAGAAACCTAAAGCAAAAAACTACTCTTAAGACTTGTCATTTGGGTAGGTATACGTTTGACTTGTATACGTATGAAAAGTATATTCAAATCAACTTTGTAGTAGACAATATTTTAAAATCGAAAAAATTGGAACTTTAAAATCGAAAAAATTTAAACTTTTTTAAAAACTGATGTGTTTGATAATTAATTTTGATTTTTTTAAAACATTTTTAAAACAAAAAGTTTTCATTTTTAGAATTTACTTTTTATCATTCCTTCTCAAATAAAGTGAAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACAGGGTTTCAAAAAGTTTTACAAAGATGCTGCATTTGGAAAAGACTATAGAGACCAAGGTTGCGGTTTCGGATGGAAGAGAATGGAACATTCGTTGTTGTGTGAGTATGCACCGAACAAGGGCTGAATTTGGAGATGGTTTGAAGAAATTTGTTGATGACAATAATTTGAAAGTTGGTGATGCATGTGTTTTTCAAATGATCAACAAAAACACCAAGACAATCTCTTTCAAAGTTCACATTTTTAGGACCACTCCTTGA

mRNA sequence

ATGGCTTCCTTCAAGAAAATGTGTAAAGACAATCCCCATTTCTTTAAAGTTGTTCTTGCTCATGCACTTGAAGAACAAAAGCTTGTGGATGATGGAAGAGAGTGGGATGTGGGTTTGACTAAAAGTAATGGAAGCGTGTGGTTTGATCGTGGATGGCAAAAGTTTGTGGAGTTTTACGCCGTTGGATTGGAGTACTTTCTTGTCTTCAAATACGACAAGAACTTGTCGAATTTTAATGTTGTCATATTTGATCTTAGTGCTACAGAGATTGAGTATCCAACAAAACAAATTTGTGTTCATGAAGATGAAGTAAGTGTGAAAATGGAGACAAGTTTGGATGATTCTTGCTCTCAAGTTTACAAGTCGAAAGGTCGAACAAGAGCGACCGAAGAAGCTACTGCCTTCCAGTCCAGGACTCTGAATCCTTCTTTCACGAGCAACATTTCACCTTCATGCATTTCTCGATGCCGTCTCATGCTGCATTTGGAAAAGACTATAGAGACCAAGGTTGCGGTTTCGGATGGAAGAGAATGGAACATTCGTTGTTGTGTGAGTATGCACCGAACAAGGGCTGAATTTGGAGATGGTTTGAAGAAATTTGTTGATGACAATAATTTGAAAGTTGGTGATGCATGTGTTTTTCAAATGATCAACAAAAACACCAAGACAATCTCTTTCAAAGTTCACATTTTTAGGACCACTCCTTGA

Coding sequence (CDS)

ATGGCTTCCTTCAAGAAAATGTGTAAAGACAATCCCCATTTCTTTAAAGTTGTTCTTGCTCATGCACTTGAAGAACAAAAGCTTGTGGATGATGGAAGAGAGTGGGATGTGGGTTTGACTAAAAGTAATGGAAGCGTGTGGTTTGATCGTGGATGGCAAAAGTTTGTGGAGTTTTACGCCGTTGGATTGGAGTACTTTCTTGTCTTCAAATACGACAAGAACTTGTCGAATTTTAATGTTGTCATATTTGATCTTAGTGCTACAGAGATTGAGTATCCAACAAAACAAATTTGTGTTCATGAAGATGAAGTAAGTGTGAAAATGGAGACAAGTTTGGATGATTCTTGCTCTCAAGTTTACAAGTCGAAAGGTCGAACAAGAGCGACCGAAGAAGCTACTGCCTTCCAGTCCAGGACTCTGAATCCTTCTTTCACGAGCAACATTTCACCTTCATGCATTTCTCGATGCCGTCTCATGCTGCATTTGGAAAAGACTATAGAGACCAAGGTTGCGGTTTCGGATGGAAGAGAATGGAACATTCGTTGTTGTGTGAGTATGCACCGAACAAGGGCTGAATTTGGAGATGGTTTGAAGAAATTTGTTGATGACAATAATTTGAAAGTTGGTGATGCATGTGTTTTTCAAATGATCAACAAAAACACCAAGACAATCTCTTTCAAAGTTCACATTTTTAGGACCACTCCTTGA

Protein sequence

MASFKKMCKDNPHFFKVVLAHALEEQKLVDDGREWDVGLTKSNGSVWFDRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTKQICVHEDEVSVKMETSLDDSCSQVYKSKGRTRATEEATAFQSRTLNPSFTSNISPSCISRCRLMLHLEKTIETKVAVSDGREWNIRCCVSMHRTRAEFGDGLKKFVDDNNLKVGDACVFQMINKNTKTISFKVHIFRTTP

Homology

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BLAST of Sed0008220 vs. NCBI nr
Match: XP_016902162.1 (PREDICTED: B3 domain-containing protein At3g18960-like [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 5.6e-52
Identity = 132/275 (48.00%), Postives = 164/275 (59.64%), Query Frame = 0


Query: 5   KKMCK--DNPHFFKVVLAHALEEQKL------------------------VDDGREWDVG 64
           K+ CK  DNPHFFKVV A AL+EQKL                          DGR+W+V 
Sbjct: 13  KQPCKASDNPHFFKVVSARALKEQKLEIPRKFVREYGVKAFATNQICLKVAADGRKWNVR 72

Query: 65  LTKSNGS--VWF-DRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTK 124
           LTK+N    VWF D GWQ FVEFY+VGLEYFLVFKY++  S+F VVIFD +ATEIEYP K
Sbjct: 73  LTKTNDGTRVWFHDDGWQMFVEFYSVGLEYFLVFKYERQSSSFYVVIFDRTATEIEYPMK 132

Query: 125 -QICVHEDEVSVKMETSLDDSCSQVYK------SKGRTRATEEATAFQSRTLNPSFTSNI 184
             IC+ + E  VK ET++        K      +  R +A   ATAFQS T+NPSF   +
Sbjct: 133 IIICIDDAEEKVKKETNISQELMDNKKKLRSTTTSQREKAMANATAFQSMTINPSFLCKM 192

Query: 185 SPSCISRCR------LMLHLEKTIETKVAVSDGREWNIRCCVSMH---RTRAEFGDGLKK 235
           SPS I R        + +H+EK++E+ + VSDGR W   CC  M+   + RAE     +K
Sbjct: 193 SPSHIHRSLNVPKRFVEMHIEKSMESILQVSDGRTWEGSCCFYMNKRMKKRAELASSWRK 252

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BLAST of Sed0008220 vs. NCBI nr
Match: XP_038900379.1 (B3 domain-containing transcription factor VRN1-like [Benincasa hispida])

HSP 1 Score: 213.0 bits (541), Expect = 2.8e-51
Identity = 132/284 (46.48%), Postives = 159/284 (55.99%), Query Frame = 0


Query: 10  DNPHFFKVVLAHALEEQKL-----------------------VDDGREWDVGLTKSNGS- 69
           DNPHFFKVVL+ AL+EQKL                       V DG+EW++GLTKSN   
Sbjct: 21  DNPHFFKVVLSDALKEQKLEIPRKFVREYGQKAFVTNQTLLKVADGKEWNMGLTKSNNGR 80

Query: 70  -VWFDRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTKQICVHEDEV 129
            VWF  GWQ+FVEFY++GL YFLVFKY+   S+FNVVIFDL+A EIEYP K I + + E 
Sbjct: 81  RVWFYHGWQQFVEFYSLGLGYFLVFKYENRSSSFNVVIFDLTAMEIEYPVKNIRLDKTEE 140

Query: 130 SVKMETSLDDSCSQVYK---------------------SKGRTRATEEATAFQSRTLNPS 189
            ++ME   DD  +  +K                        R RA  EATAFQS TLNPS
Sbjct: 141 KIEMEIYFDDDLAPDFKVEEISLGARKPMNSRWKPPSTESQRARAMAEATAFQSMTLNPS 200

Query: 190 FTSNISPSCISRCRLM--------LHLEKTIETKVAVSDGREWNIRC-----CVSMHRTR 235
           F   I PS I   R +        +HLE+  E  + VSDGR W+ RC     C    RT 
Sbjct: 201 FMCKIWPSHIHLGRCLNVPKSFAAMHLEEPTEIILQVSDGRMWSGRCGFYWTCKMQRRT- 260

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BLAST of Sed0008220 vs. NCBI nr
Match: XP_022928080.1 (B3 domain-containing protein REM8-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 9.2e-47
Identity = 127/296 (42.91%), Postives = 155/296 (52.36%), Query Frame = 0


Query: 1   MASFKKMCK--DNPHFFKVVLAHALEEQKL-----------------------VDDGREW 60
           MAS  + CK  DNPHFFKVVLAHAL+EQKL                       V DG EW
Sbjct: 12  MASSSQPCKAPDNPHFFKVVLAHALKEQKLEIPKKFVGEYGLKAFENNPTRVKVADGEEW 71

Query: 61  DVGLTKSNGSVWFDRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTK 120
           +VG+TKS+G VWFD GWQKFVEFY VGLEYFLVFKY+   S F+VVIFD +ATEI+YP K
Sbjct: 72  EVGVTKSDGRVWFDYGWQKFVEFYNVGLEYFLVFKYELRSSCFHVVIFDPTATEIKYPLK 131

Query: 121 QICVHEDEVSVKMETSLDD--------------------------SCSQVYKSKGRTRAT 180
           +         + M T+ DD                              + ++  R  A 
Sbjct: 132 K--------KLNMGTNFDDLHLISHPHPQVGKASFGAMKLMNNKRKLRSMTRTSERAGAM 191

Query: 181 EEATAFQSRTLNPSFTSNISPSCIS--------RCRLMLHLEKTIETKVAVSDGREWNI- 235
            +AT FQS T NPSF   I PS I         R    +H+E+  E  +  SDGR W + 
Sbjct: 192 AKATTFQSMTPNPSFMCKIYPSHIQSGAYLNVPRRFAEMHIEEGAEMVLQDSDGRTWGVT 251

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BLAST of Sed0008220 vs. NCBI nr
Match: XP_022971708.1 (B3 domain-containing protein REM8-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-46
Identity = 127/296 (42.91%), Postives = 158/296 (53.38%), Query Frame = 0


Query: 1   MASFKKMCK--DNPHFFKVVLAHALEEQKL-----------------------VDDGREW 60
           MAS  ++CK  DNPHFFK+VLAHAL+EQKL                       V DG EW
Sbjct: 12  MASSSQLCKAPDNPHFFKIVLAHALKEQKLEIPKKFVGEYGLKAFENNPTRLKVADGEEW 71

Query: 61  DVGLTKSNGSVWFDRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTK 120
           +VG+TKS+G VWFD GWQKFVEFY VGLEYFLVFKY+   S F+VVIFD +ATEI+YP K
Sbjct: 72  EVGVTKSDGRVWFDYGWQKFVEFYNVGLEYFLVFKYELRSSCFHVVIFDPTATEIKYPLK 131

Query: 121 QICVHEDEVSVKMETSLDD----------------SCSQVYKSKGRTR----------AT 180
           +         +KM T+ DD                   ++  +K + R          A 
Sbjct: 132 K--------KLKMGTNFDDLHLISHPHPQVGKASFGAMELMNNKRKLRLMTRTSERAGAM 191

Query: 181 EEATAFQSRTLNPSFTSNISPSCIS--------RCRLMLHLEKTIETKVAVSDGREWNI- 235
            +AT FQS T NPSF   I PS I         R     H+E+  E  +   DGR W + 
Sbjct: 192 AKATTFQSMTPNPSFMCKIYPSHIQSGAYLNVPRRFAERHIEEPTEMTLQDLDGRTWGVT 251

[Close]

BLAST of Sed0008220 vs. NCBI nr
Match: XP_023513174.1 (B3 domain-containing transcription factor VRN1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.3 bits (495), Expect = 6.0e-46
Identity = 126/296 (42.57%), Postives = 156/296 (52.70%), Query Frame = 0


Query: 1   MASFKKMCK--DNPHFFKVVLAHALEEQKL-----------------------VDDGREW 60
           MAS  ++CK  DNPHFFKVVLAHAL+EQKL                       V DG EW
Sbjct: 12  MASSSQLCKDPDNPHFFKVVLAHALKEQKLEIPKKFVGEYGLKAFENNPTRVKVADGEEW 71

Query: 61  DVGLTKSNGSVWFDRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTK 120
           +VG+TK +G VWFD GWQKFVEFY VGLEYFLVFKY+   S F+VVIFD +ATEI+YP K
Sbjct: 72  EVGVTKRDGRVWFDYGWQKFVEFYNVGLEYFLVFKYELRSSCFHVVIFDPTATEIKYPLK 131

Query: 121 QICVHEDEVSVKMETSLDD--------------------------SCSQVYKSKGRTRAT 180
                  +  +KM T+ DD                              + ++  R  A 
Sbjct: 132 -------KKKLKMGTNFDDLHLISHPHPQVGKASFGAMKLMNNRRKLRSMTRTSERAGAM 191

Query: 181 EEATAFQSRTLNPSFTSNISPSCIS--------RCRLMLHLEKTIETKVAVSDGREWNI- 235
            +AT FQS T NPSF   I PS I         R    +H+E+  E  +  SDGR W + 
Sbjct: 192 AKATTFQSMTPNPSFMCKIYPSHIQSGAYLNVPRRFAEMHIEEGAEMVLQDSDGRTWGVT 251

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BLAST of Sed0008220 vs. ExPASy Swiss-Prot
Match: Q8L3W1 (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 GN=VRN1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.7e-12
Identity = 79/339 (23.30%), Postives = 130/339 (38.35%), Query Frame = 0


Query: 12  PHFFKVVLAHALEEQKL---------------------VDDGREWDVGLTKSNGSVWFDR 71
           P F K++ +  ++E++L                     V DG  W VGL K++  +WF  
Sbjct: 4   PFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQD 63

Query: 72  GWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTKQI--CVHEDEVSVKM 131
           GWQ+FV+ Y++ + Y L+F+Y+ N S F+V IF+LS +EI Y +  +    H      ++
Sbjct: 64  GWQEFVDRYSIRIGYLLIFRYEGN-SAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARL 123

Query: 132 ETSLDDSCSQVY----------------------------------------------KS 191
              L+D  ++V                                               K 
Sbjct: 124 FEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKK 183

Query: 192 KGRTRATE----------------------EATAFQSRTL------------------NP 233
           +GR +                         E+ + + RT+                  NP
Sbjct: 184 RGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNP 243

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BLAST of Sed0008220 vs. ExPASy Swiss-Prot
Match: Q851V1 (Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0621600 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.4e-10
Identity = 71/273 (26.01%), Postives = 113/273 (41.39%), Query Frame = 0


Query: 1   MASFKKMCKDNPHFF--KVVLAHALEEQKLVDDGREWDVGLTKSNGSVWFDRGWQKFVEF 60
           MAS K +  +  H F  K+  +  LE +     G  +DV +TK++G V    GW  +V  
Sbjct: 40  MASHKTIPNEFLHNFGGKIPKSIKLETR----SGLTFDVQVTKNSGRVVLQSGWASYVSA 99

Query: 61  YAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTKQICVHEDEVSVKMETSLDDSCSQ 120
           + + +  FLVFKY  + S    +IFD S  E +   K + +      + M  S D+   +
Sbjct: 100 HDLKIGDFLVFKYSGD-SQLKTLIFDSSGCE-KVCEKPVDMSGRSYDIAMRNSQDEKKKR 159

Query: 121 VYKS---KGRTRATEE-----------------------------ATAFQSRTLNPSFTS 180
             +    +G  + +EE                               A  S T    +  
Sbjct: 160 KQRDISRQGTVKPSEEGLKAELVPGCILPSRTDLTRLQKNILIEKVKAINSETPIYGYVM 219

Query: 181 NISP----SC---ISRCRLMLHLEKTIETKVAVSDGREWNIRCCVSMHRTRAEFGDGLKK 233
           N S      C   IS+    ++L     T V    G+ WN+RCC++   ++  F  G ++
Sbjct: 220 NNSSIHGIPCTVEISKKYADVYLPFEDGTVVLQHHGKSWNVRCCLTKQNSK-RFLKGWRQ 279

[Close]

BLAST of Sed0008220 vs. ExPASy Swiss-Prot
Match: Q9ZSH7 (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.6e-07
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 0


Query: 6   KMCKDNPHFFKVVLAHALEEQKLVDD-GREWDVGLTKSNGSVWFDRGWQKFVEFYAVGLE 65
           KM +  P F K+  +   E   LV   G +  + L +    +WF  GW +F E +++   
Sbjct: 42  KMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEG 101

Query: 66  YFLVFKYDKNLSNFNVVIFDLSATEIEYPTKQICVHEDEVSVKMETSLDDSCSQVYKSKG 125
           +FL+F+Y KN S+F V+IF+ SA E  YP   + + + +  V   T  +      +KSK 
Sbjct: 102 HFLLFEYKKN-SSFRVIIFNASACETNYPLDAVHIIDSDDDVIEITGKEFDTE--HKSKK 161

Query: 126 RTRATE 131
           R R  E
Sbjct: 162 RPRDIE 164

[Close]

BLAST of Sed0008220 vs. ExPASy Swiss-Prot
Match: Q9XIB4 (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 7.4e-07
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 32  GREWDVGLTKSNGSVWFDRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIE 91
           G +  + + +    VWF++GW +F E +++   +FL F Y+ + S F VVIFD+SA+EIE
Sbjct: 72  GFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGD-SCFRVVIFDVSASEIE 131

Query: 92  YPTKQICVHEDEV 105
           YP      + +EV
Sbjct: 132 YPLDDTDDNREEV 143

[Close]

BLAST of Sed0008220 vs. ExPASy Swiss-Prot
Match: Q84R27 (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18960 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.7e-07
Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 6   KMCKDNPHFFKVVLAHALEEQKL-VDDGREWDVGLTKSNGSVWFDRGWQKFVEFYAVGLE 65
           KM K  P F K+  +   E   L    G +  + L +    +WF  GW +F E +++   
Sbjct: 42  KMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEG 101

Query: 66  YFLVFKYDKNLSNFNVVIFDLSATEIEYPTKQICVHEDE 104
           +FL+F+Y +N S+F V+IF++SA E +YP   + + + +
Sbjct: 102 HFLLFEYKEN-SSFRVIIFNVSACETKYPLDAVHIIDSD 139

[Close]

BLAST of Sed0008220 vs. ExPASy TrEMBL
Match: A0A1S4E1R1 (B3 domain-containing protein At3g18960-like OS=Cucumis melo OX=3656 GN=LOC103497525 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 2.7e-52
Identity = 132/275 (48.00%), Postives = 164/275 (59.64%), Query Frame = 0


Query: 5   KKMCK--DNPHFFKVVLAHALEEQKL------------------------VDDGREWDVG 64
           K+ CK  DNPHFFKVV A AL+EQKL                          DGR+W+V 
Sbjct: 13  KQPCKASDNPHFFKVVSARALKEQKLEIPRKFVREYGVKAFATNQICLKVAADGRKWNVR 72

Query: 65  LTKSNGS--VWF-DRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTK 124
           LTK+N    VWF D GWQ FVEFY+VGLEYFLVFKY++  S+F VVIFD +ATEIEYP K
Sbjct: 73  LTKTNDGTRVWFHDDGWQMFVEFYSVGLEYFLVFKYERQSSSFYVVIFDRTATEIEYPMK 132

Query: 125 -QICVHEDEVSVKMETSLDDSCSQVYK------SKGRTRATEEATAFQSRTLNPSFTSNI 184
             IC+ + E  VK ET++        K      +  R +A   ATAFQS T+NPSF   +
Sbjct: 133 IIICIDDAEEKVKKETNISQELMDNKKKLRSTTTSQREKAMANATAFQSMTINPSFLCKM 192

Query: 185 SPSCISRCR------LMLHLEKTIETKVAVSDGREWNIRCCVSMH---RTRAEFGDGLKK 235
           SPS I R        + +H+EK++E+ + VSDGR W   CC  M+   + RAE     +K
Sbjct: 193 SPSHIHRSLNVPKRFVEMHIEKSMESILQVSDGRTWEGSCCFYMNKRMKKRAELASSWRK 252

[Close]

BLAST of Sed0008220 vs. ExPASy TrEMBL
Match: A0A6J1EQN2 (B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434972 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 4.5e-47
Identity = 127/296 (42.91%), Postives = 155/296 (52.36%), Query Frame = 0


Query: 1   MASFKKMCK--DNPHFFKVVLAHALEEQKL-----------------------VDDGREW 60
           MAS  + CK  DNPHFFKVVLAHAL+EQKL                       V DG EW
Sbjct: 12  MASSSQPCKAPDNPHFFKVVLAHALKEQKLEIPKKFVGEYGLKAFENNPTRVKVADGEEW 71

Query: 61  DVGLTKSNGSVWFDRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTK 120
           +VG+TKS+G VWFD GWQKFVEFY VGLEYFLVFKY+   S F+VVIFD +ATEI+YP K
Sbjct: 72  EVGVTKSDGRVWFDYGWQKFVEFYNVGLEYFLVFKYELRSSCFHVVIFDPTATEIKYPLK 131

Query: 121 QICVHEDEVSVKMETSLDD--------------------------SCSQVYKSKGRTRAT 180
           +         + M T+ DD                              + ++  R  A 
Sbjct: 132 K--------KLNMGTNFDDLHLISHPHPQVGKASFGAMKLMNNKRKLRSMTRTSERAGAM 191

Query: 181 EEATAFQSRTLNPSFTSNISPSCIS--------RCRLMLHLEKTIETKVAVSDGREWNI- 235
            +AT FQS T NPSF   I PS I         R    +H+E+  E  +  SDGR W + 
Sbjct: 192 AKATTFQSMTPNPSFMCKIYPSHIQSGAYLNVPRRFAEMHIEEGAEMVLQDSDGRTWGVT 251

[Close]

BLAST of Sed0008220 vs. ExPASy TrEMBL
Match: A0A6J1I7N8 (B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470376 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.0e-46
Identity = 127/296 (42.91%), Postives = 158/296 (53.38%), Query Frame = 0


Query: 1   MASFKKMCK--DNPHFFKVVLAHALEEQKL-----------------------VDDGREW 60
           MAS  ++CK  DNPHFFK+VLAHAL+EQKL                       V DG EW
Sbjct: 12  MASSSQLCKAPDNPHFFKIVLAHALKEQKLEIPKKFVGEYGLKAFENNPTRLKVADGEEW 71

Query: 61  DVGLTKSNGSVWFDRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTK 120
           +VG+TKS+G VWFD GWQKFVEFY VGLEYFLVFKY+   S F+VVIFD +ATEI+YP K
Sbjct: 72  EVGVTKSDGRVWFDYGWQKFVEFYNVGLEYFLVFKYELRSSCFHVVIFDPTATEIKYPLK 131

Query: 121 QICVHEDEVSVKMETSLDD----------------SCSQVYKSKGRTR----------AT 180
           +         +KM T+ DD                   ++  +K + R          A 
Sbjct: 132 K--------KLKMGTNFDDLHLISHPHPQVGKASFGAMELMNNKRKLRLMTRTSERAGAM 191

Query: 181 EEATAFQSRTLNPSFTSNISPSCIS--------RCRLMLHLEKTIETKVAVSDGREWNI- 235
            +AT FQS T NPSF   I PS I         R     H+E+  E  +   DGR W + 
Sbjct: 192 AKATTFQSMTPNPSFMCKIYPSHIQSGAYLNVPRRFAERHIEEPTEMTLQDLDGRTWGVT 251

[Close]

BLAST of Sed0008220 vs. ExPASy TrEMBL
Match: A0A6J1EJ99 (B3 domain-containing protein REM8-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434972 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.5e-42
Identity = 118/284 (41.55%), Postives = 147/284 (51.76%), Query Frame = 0


Query: 1   MASFKKMCK--DNPHFFKVVLAHALEEQKL-----------VDDGREWDVGLTKSNGSVW 60
           MAS  + CK  DNPHFFK +    + E  L           V DG EW+VG+TKS+G VW
Sbjct: 12  MASSSQPCKAPDNPHFFKEIPKKFVGEYGLKAFENNPTRVKVADGEEWEVGVTKSDGRVW 71

Query: 61  FDRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTKQICVHEDEVSVK 120
           FD GWQKFVEFY VGLEYFLVFKY+   S F+VVIFD +ATEI+YP K+         + 
Sbjct: 72  FDYGWQKFVEFYNVGLEYFLVFKYELRSSCFHVVIFDPTATEIKYPLKK--------KLN 131

Query: 121 METSLDD--------------------------SCSQVYKSKGRTRATEEATAFQSRTLN 180
           M T+ DD                              + ++  R  A  +AT FQS T N
Sbjct: 132 MGTNFDDLHLISHPHPQVGKASFGAMKLMNNKRKLRSMTRTSERAGAMAKATTFQSMTPN 191

Query: 181 PSFTSNISPSCIS--------RCRLMLHLEKTIETKVAVSDGREWNI---RCCVSMHRTR 235
           PSF   I PS I         R    +H+E+  E  +  SDGR W +          + R
Sbjct: 192 PSFMCKIYPSHIQSGAYLNVPRRFAEMHIEEGAEMVLQDSDGRTWGVTYYSYLTPQMKRR 251

[Close]

BLAST of Sed0008220 vs. ExPASy TrEMBL
Match: A0A6J1I9C1 (B3 domain-containing protein REM8-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470376 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.3e-42
Identity = 119/284 (41.90%), Postives = 150/284 (52.82%), Query Frame = 0


Query: 1   MASFKKMCK--DNPHFFKVVLAHALEEQKL-----------VDDGREWDVGLTKSNGSVW 60
           MAS  ++CK  DNPHFFK +    + E  L           V DG EW+VG+TKS+G VW
Sbjct: 12  MASSSQLCKAPDNPHFFKEIPKKFVGEYGLKAFENNPTRLKVADGEEWEVGVTKSDGRVW 71

Query: 61  FDRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTKQICVHEDEVSVK 120
           FD GWQKFVEFY VGLEYFLVFKY+   S F+VVIFD +ATEI+YP K+         +K
Sbjct: 72  FDYGWQKFVEFYNVGLEYFLVFKYELRSSCFHVVIFDPTATEIKYPLKK--------KLK 131

Query: 121 METSLDD----------------SCSQVYKSKGRTR----------ATEEATAFQSRTLN 180
           M T+ DD                   ++  +K + R          A  +AT FQS T N
Sbjct: 132 MGTNFDDLHLISHPHPQVGKASFGAMELMNNKRKLRLMTRTSERAGAMAKATTFQSMTPN 191

Query: 181 PSFTSNISPSCIS--------RCRLMLHLEKTIETKVAVSDGREWNI---RCCVSMHRTR 235
           PSF   I PS I         R     H+E+  E  +   DGR W +          + R
Sbjct: 192 PSFMCKIYPSHIQSGAYLNVPRRFAERHIEEPTEMTLQDLDGRTWGVTYYSYLTPKMKRR 251

[Close]

BLAST of Sed0008220 vs. TAIR 10
Match: AT3G18990.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 72.4 bits (176), Expect = 5.4e-13
Identity = 79/339 (23.30%), Postives = 130/339 (38.35%), Query Frame = 0


Query: 12  PHFFKVVLAHALEEQKL---------------------VDDGREWDVGLTKSNGSVWFDR 71
           P F K++ +  ++E++L                     V DG  W VGL K++  +WF  
Sbjct: 4   PFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQD 63

Query: 72  GWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIEYPTKQI--CVHEDEVSVKM 131
           GWQ+FV+ Y++ + Y L+F+Y+ N S F+V IF+LS +EI Y +  +    H      ++
Sbjct: 64  GWQEFVDRYSIRIGYLLIFRYEGN-SAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARL 123

Query: 132 ETSLDDSCSQVY----------------------------------------------KS 191
              L+D  ++V                                               K 
Sbjct: 124 FEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKK 183

Query: 192 KGRTRATE----------------------EATAFQSRTL------------------NP 233
           +GR +                         E+ + + RT+                  NP
Sbjct: 184 RGRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNP 243

[Close]

BLAST of Sed0008220 vs. TAIR 10
Match: AT4G01580.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-08
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 0


Query: 6   KMCKDNPHFFKVVLAHALEEQKLVDD-GREWDVGLTKSNGSVWFDRGWQKFVEFYAVGLE 65
           KM +  P F K+  +   E   LV   G +  + L +    +WF  GW +F E +++   
Sbjct: 42  KMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEG 101

Query: 66  YFLVFKYDKNLSNFNVVIFDLSATEIEYPTKQICVHEDEVSVKMETSLDDSCSQVYKSKG 125
           +FL+F+Y KN S+F V+IF+ SA E  YP   + + + +  V   T  +      +KSK 
Sbjct: 102 HFLLFEYKKN-SSFRVIIFNASACETNYPLDAVHIIDSDDDVIEITGKEFDTE--HKSKK 161

Query: 126 RTRATE 131
           R R  E
Sbjct: 162 RPRDIE 164

[Close]

BLAST of Sed0008220 vs. TAIR 10
Match: AT1G49475.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 55.8 bits (133), Expect = 5.3e-08
Identity = 28/73 (38.36%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 32  GREWDVGLTKSNGSVWFDRGWQKFVEFYAVGLEYFLVFKYDKNLSNFNVVIFDLSATEIE 91
           G +  + + +    VWF++GW +F E +++   +FL F Y+ + S F VVIFD+SA+EIE
Sbjct: 72  GFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGD-SCFRVVIFDVSASEIE 131

Query: 92  YPTKQICVHEDEV 105
           YP      + +EV
Sbjct: 132 YPLDDTDDNREEV 143

[Close]

BLAST of Sed0008220 vs. TAIR 10
Match: AT3G18960.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-08
Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 6   KMCKDNPHFFKVVLAHALEEQKL-VDDGREWDVGLTKSNGSVWFDRGWQKFVEFYAVGLE 65
           KM K  P F K+  +   E   L    G +  + L +    +WF  GW +F E +++   
Sbjct: 42  KMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEG 101

Query: 66  YFLVFKYDKNLSNFNVVIFDLSATEIEYPTKQICVHEDE 104
           +FL+F+Y +N S+F V+IF++SA E +YP   + + + +
Sbjct: 102 HFLLFEYKEN-SSFRVIIFNVSACETKYPLDAVHIIDSD 139

[Close]

BLAST of Sed0008220 vs. TAIR 10
Match: AT4G33280.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 52.4 bits (124), Expect = 5.8e-07
Identity = 24/59 (40.68%), Postives = 32/59 (54.24%), Query Frame = 0


Query: 174 DGREWNIRCCVSMHRTRAEFGDGLKKFVDDNNLKVGDACVFQMINKNTKTISFKVHIFR 233
           D  +W ++  +   R       G KKFV DNNL+ GD CVF+  N  TK +   V+IFR
Sbjct: 261 DQTKWEMKFNIFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSETKPLHLNVYIFR 319

The following BLAST results are available for this feature:

BLAST of Sed0008220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902162.1	5.6e-52	48.00	PREDICTED: B3 domain-containing protein At3g18960-like [Cucumis melo]	[more]
XP_038900379.1	2.8e-51	46.48	B3 domain-containing transcription factor VRN1-like [Benincasa hispida]	[more]
XP_022928080.1	9.2e-47	42.91	B3 domain-containing protein REM8-like isoform X1 [Cucurbita moschata]	[more]
XP_022971708.1	2.1e-46	42.91	B3 domain-containing protein REM8-like isoform X1 [Cucurbita maxima]	[more]
XP_023513174.1	6.0e-46	42.57	B3 domain-containing transcription factor VRN1-like isoform X1 [Cucurbita pepo s...	[more]

BLAST of Sed0008220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3W1	7.7e-12	23.30	B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q851V1	9.4e-10	26.01	Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japoni...	[more]
Q9ZSH7	2.6e-07	31.75	B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana OX=3702 GN=At4g01...	[more]
Q9XIB4	7.4e-07	38.36	B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana OX=3702 GN=At1g49...	[more]
Q84R27	9.7e-07	31.31	B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana OX=3702 GN=At3g18...	[more]

BLAST of Sed0008220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1R1	2.7e-52	48.00	B3 domain-containing protein At3g18960-like OS=Cucumis melo OX=3656 GN=LOC103497...	[more]
A0A6J1EQN2	4.5e-47	42.91	B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1I7N8	1.0e-46	42.91	B3 domain-containing protein REM8-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1EJ99	2.5e-42	41.55	B3 domain-containing protein REM8-like isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1I9C1	4.3e-42	41.90	B3 domain-containing protein REM8-like isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Sed0008220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18990.1	5.4e-13	23.30	AP2/B3-like transcriptional factor family protein	[more]
AT4G01580.1	1.8e-08	31.75	AP2/B3-like transcriptional factor family protein	[more]
AT1G49475.1	5.3e-08	38.36	AP2/B3-like transcriptional factor family protein	[more]
AT3G18960.1	6.9e-08	31.31	AP2/B3-like transcriptional factor family protein	[more]
AT4G33280.1	5.8e-07	40.68	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 14..86 e-value: 0.061 score: 12.4 coord: 144..234 e-value: 4.0E-7 score: 39.7
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 28..84 e-value: 5.1E-9 score: 35.9 coord: 148..233 e-value: 1.1E-13 score: 50.9
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 1..86 score: 10.320127
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 175..234 score: 10.150909
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 142..232 e-value: 7.40087E-16 score: 68.8937
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 3..84 e-value: 9.48669E-11 score: 55.0265
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 121..234 e-value: 1.8E-20 score: 74.9
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 21..87 e-value: 4.4E-12 score: 47.7
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 10..86
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 141..233
None	No IPR available	PANTHER	PTHR31920:SF26	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	coord: 31..129
None	No IPR available	PANTHER	PTHR31920:SF26	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	coord: 123..233
None	No IPR available	PANTHER	PTHR31920	B3 DOMAIN-CONTAINING	coord: 123..233
None	No IPR available	PANTHER	PTHR31920	B3 DOMAIN-CONTAINING	coord: 31..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008220.1	Sed0008220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding